Wall clock time and date at job start Sun Mar 29 2020 21:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.49126 * 2 1 4 4 O 1.42902 * 109.48115 * 120.02516 * 2 1 3 5 5 C 1.42905 * 114.09897 * 181.14272 * 4 2 1 6 6 C 1.53100 * 109.48516 * 298.88856 * 5 4 2 7 7 C 1.53179 * 109.15719 * 57.47822 * 6 5 4 8 8 C 1.53089 * 109.48481 * 239.97087 * 2 1 3 9 9 H 1.09000 * 109.52446 * 302.31784 * 8 2 1 10 10 C 1.50707 * 109.52140 * 62.50227 * 8 2 1 11 11 O 1.21291 * 119.99666 * 359.68962 * 10 8 2 12 12 N 1.34772 * 119.99866 * 179.68831 * 10 8 2 13 13 C 1.37098 * 120.00182 * 180.02562 * 12 10 8 14 14 H 1.08001 * 119.99803 * 359.97438 * 13 12 10 15 15 C 1.38948 * 120.00363 * 179.97438 * 13 12 10 16 16 N 1.31415 * 120.00060 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99898 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46653 * 90.00090 * 17 15 13 19 19 H 1.48496 * 109.47116 * 210.00078 * 17 15 13 20 20 H 1.48502 * 109.47048 * 330.00531 * 17 15 13 21 21 H 1.08999 * 109.46990 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.47051 * 300.02733 * 1 2 3 23 23 H 1.08999 * 109.46903 * 60.03160 * 1 2 3 24 24 H 1.09002 * 109.47741 * 58.82940 * 5 4 2 25 25 H 1.08998 * 109.47771 * 178.85167 * 5 4 2 26 26 H 1.08997 * 109.45514 * 297.61143 * 6 5 4 27 27 H 1.08999 * 109.59440 * 177.42362 * 6 5 4 28 28 H 1.09002 * 109.54484 * 183.23723 * 7 6 5 29 29 H 1.08999 * 109.54222 * 63.05889 * 7 6 5 30 30 H 0.97007 * 120.00161 * 359.97438 * 12 10 8 31 31 H 0.96999 * 119.99250 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 8 2.0066 -0.6741 1.1664 5 6 3.4308 -0.7092 1.2791 6 6 4.0195 -1.4588 0.0810 7 6 3.5712 -0.7708 -1.2121 8 6 2.0407 -0.7222 -1.2495 9 1 1.6444 -1.7374 -1.2710 10 6 1.5904 0.0215 -2.4805 11 8 0.9214 1.0273 -2.3705 12 7 1.9310 -0.4309 -3.7034 13 6 1.5219 0.2460 -4.8233 14 1 0.9262 1.1415 -4.7254 15 6 1.8735 -0.2201 -6.0841 16 7 1.4809 0.4285 -7.1575 17 14 2.9045 -1.7687 -6.2534 18 1 2.0106 -2.9515 -6.3381 19 1 3.7291 -1.6821 -7.4853 20 1 3.7930 -1.9035 -5.0712 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5142 0.8897 23 1 -0.3633 0.5133 -0.8903 24 1 3.8192 0.3091 1.2959 25 1 3.7099 -1.2200 2.2006 26 1 3.6646 -2.4893 0.0874 27 1 5.1078 -1.4471 0.1414 28 1 3.9393 -1.3326 -2.0706 29 1 3.9691 0.2435 -1.2423 30 1 2.4664 -1.2350 -3.7913 31 1 1.7261 0.1028 -8.0376 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307756406.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:46 Heat of formation + Delta-G solvation = -95.533735 kcal Electronic energy + Delta-G solvation = -14781.118294 eV Core-core repulsion = 12255.110958 eV Total energy + Delta-G solvation = -2526.007336 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.80796 -37.76891 -34.18326 -33.46275 -32.15961 -31.63498 -27.82231 -25.29050 -23.95446 -21.96881 -20.54120 -19.26324 -18.33768 -16.45920 -15.86757 -15.23953 -14.81894 -14.60050 -14.32063 -13.80618 -13.27789 -13.00740 -12.56985 -12.32230 -12.03570 -11.93512 -11.60234 -11.24349 -11.05827 -10.83010 -10.69945 -10.60236 -10.13401 -9.99346 -9.58533 -9.26155 -8.43362 -8.21031 -6.35222 -3.86462 2.99589 3.04367 3.12497 3.66845 3.93942 4.06885 4.61983 4.93004 4.93585 4.99289 5.15996 5.26220 5.40912 5.54719 5.67390 5.76833 5.82714 5.93787 6.00086 6.06278 6.16289 6.28936 6.30972 6.49612 6.84229 7.44358 7.53501 8.11234 8.54562 8.90372 9.38668 9.77887 10.77713 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.041931 B = 0.009309 C = 0.008016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.595665 B = 3007.075057 C = 3492.211313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.113 3.887 3 H 0.064 0.936 4 O -0.384 6.384 5 C 0.060 3.940 6 C -0.154 4.154 7 C -0.116 4.116 8 C -0.131 4.131 9 H 0.090 0.910 10 C 0.458 3.542 11 O -0.574 6.574 12 N -0.584 5.584 13 C -0.307 4.307 14 H 0.121 0.879 15 C 0.043 3.957 16 N -0.879 5.879 17 Si 0.877 3.123 18 H -0.270 1.270 19 H -0.276 1.276 20 H -0.269 1.269 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.102 0.898 24 H 0.048 0.952 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.371 0.629 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.518 -5.856 12.361 14.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.055 3.945 3 H 0.082 0.918 4 O -0.304 6.304 5 C -0.017 4.017 6 C -0.192 4.192 7 C -0.154 4.154 8 C -0.154 4.154 9 H 0.108 0.892 10 C 0.244 3.756 11 O -0.458 6.458 12 N -0.222 5.222 13 C -0.436 4.436 14 H 0.138 0.862 15 C -0.160 4.160 16 N -0.519 5.519 17 Si 0.704 3.296 18 H -0.195 1.195 19 H -0.201 1.201 20 H -0.195 1.195 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.120 0.880 24 H 0.066 0.934 25 H 0.107 0.893 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.204 0.796 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.932 -5.237 12.306 14.255 hybrid contribution 1.152 -1.210 -0.646 1.791 sum 6.084 -6.447 11.661 14.647 Atomic orbital electron populations 1.21970 0.92492 1.02210 1.03918 1.21770 0.95628 0.94564 0.82522 0.91755 1.87912 1.20410 1.78515 1.43536 1.22512 0.81826 0.99435 0.97884 1.22203 1.00838 1.00565 0.95564 1.21621 0.94337 1.01669 0.97787 1.21859 0.96535 1.01289 0.95680 0.89197 1.19519 0.85133 0.87277 0.83682 1.90502 1.42312 1.26967 1.86001 1.42238 1.48316 1.25686 1.05959 1.19466 1.31702 1.10266 0.82134 0.86169 1.25045 0.97799 0.98070 0.95134 1.69623 1.45022 1.39249 0.97985 0.86703 0.80738 0.83615 0.78572 1.19513 1.20076 1.19484 0.92980 0.92814 0.87979 0.93380 0.89278 0.91074 0.90910 0.91246 0.91205 0.79618 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.28 37.16 0.34 -2.18 16 2 C 0.11 1.92 2.40 -26.68 -0.06 1.86 16 3 H 0.06 1.16 8.04 -51.93 -0.42 0.74 16 4 O -0.38 -5.97 10.41 -35.23 -0.37 -6.33 16 5 C 0.06 0.74 6.84 37.21 0.25 0.99 16 6 C -0.15 -1.83 6.14 -26.59 -0.16 -1.99 16 7 C -0.12 -1.74 5.18 -26.55 -0.14 -1.88 16 8 C -0.13 -2.31 2.24 -91.63 -0.20 -2.51 16 9 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 10 C 0.46 10.36 6.83 -10.98 -0.08 10.28 16 11 O -0.57 -14.91 13.39 5.55 0.07 -14.83 16 12 N -0.58 -13.94 5.00 -10.96 -0.05 -14.00 16 13 C -0.31 -8.64 10.16 -14.93 -0.15 -8.79 16 14 H 0.12 3.84 7.39 -52.49 -0.39 3.46 16 15 C 0.04 1.17 5.50 -17.47 -0.10 1.07 16 16 N -0.88 -25.55 13.96 55.50 0.77 -24.78 16 17 Si 0.88 19.35 27.74 -169.99 -4.71 14.64 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.27 -5.42 6.52 56.52 0.37 -5.06 16 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.10 2.00 5.73 -51.93 -0.30 1.70 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.02 7.67 -51.93 -0.40 0.62 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.37 7.89 5.25 -40.82 -0.21 7.68 16 31 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 253.30 15.07 3.82 3.82 Total: -1.00 -30.76 253.30 -5.03 -35.79 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -4.27 Total: 8.83 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -0.29 Total: -3.14 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.72 Total: -38.77 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.29 Total: -21.17 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.71 Total: 14.64 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.76 -5.03 -35.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307756406.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.742 kcal (2) G-P(sol) polarization free energy of solvation -30.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds