Wall clock time and date at job start Sun Mar 29 2020 21:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.49126 * 2 1 4 4 O 1.42902 * 109.48115 * 120.02516 * 2 1 3 5 5 C 1.42905 * 114.09897 * 181.14272 * 4 2 1 6 6 C 1.53100 * 109.48516 * 298.88856 * 5 4 2 7 7 C 1.53179 * 109.15719 * 57.47822 * 6 5 4 8 8 C 1.53089 * 109.48481 * 239.97087 * 2 1 3 9 9 H 1.09000 * 109.52446 * 302.31784 * 8 2 1 10 10 C 1.50707 * 109.52140 * 62.50227 * 8 2 1 11 11 O 1.21291 * 119.99666 * 359.68962 * 10 8 2 12 12 N 1.34772 * 119.99866 * 179.68831 * 10 8 2 13 13 C 1.37098 * 120.00182 * 180.02562 * 12 10 8 14 14 H 1.08001 * 119.99803 * 359.97438 * 13 12 10 15 15 C 1.38948 * 120.00363 * 179.97438 * 13 12 10 16 16 N 1.31415 * 120.00060 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99898 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46653 * 90.00090 * 17 15 13 19 19 H 1.48496 * 109.47116 * 210.00078 * 17 15 13 20 20 H 1.48502 * 109.47048 * 330.00531 * 17 15 13 21 21 H 1.08999 * 109.46990 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.47051 * 300.02733 * 1 2 3 23 23 H 1.08999 * 109.46903 * 60.03160 * 1 2 3 24 24 H 1.09002 * 109.47741 * 58.82940 * 5 4 2 25 25 H 1.08998 * 109.47771 * 178.85167 * 5 4 2 26 26 H 1.08997 * 109.45514 * 297.61143 * 6 5 4 27 27 H 1.08999 * 109.59440 * 177.42362 * 6 5 4 28 28 H 1.09002 * 109.54484 * 183.23723 * 7 6 5 29 29 H 1.08999 * 109.54222 * 63.05889 * 7 6 5 30 30 H 0.97007 * 120.00161 * 359.97438 * 12 10 8 31 31 H 0.96999 * 119.99250 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 8 2.0066 -0.6741 1.1664 5 6 3.4308 -0.7092 1.2791 6 6 4.0195 -1.4588 0.0810 7 6 3.5712 -0.7708 -1.2121 8 6 2.0407 -0.7222 -1.2495 9 1 1.6444 -1.7374 -1.2710 10 6 1.5904 0.0215 -2.4805 11 8 0.9214 1.0273 -2.3705 12 7 1.9310 -0.4309 -3.7034 13 6 1.5219 0.2460 -4.8233 14 1 0.9262 1.1415 -4.7254 15 6 1.8735 -0.2201 -6.0841 16 7 1.4809 0.4285 -7.1575 17 14 2.9045 -1.7687 -6.2534 18 1 2.0106 -2.9515 -6.3381 19 1 3.7291 -1.6821 -7.4853 20 1 3.7930 -1.9035 -5.0712 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5142 0.8897 23 1 -0.3633 0.5133 -0.8903 24 1 3.8192 0.3091 1.2959 25 1 3.7099 -1.2200 2.2006 26 1 3.6646 -2.4893 0.0874 27 1 5.1078 -1.4471 0.1414 28 1 3.9393 -1.3326 -2.0706 29 1 3.9691 0.2435 -1.2423 30 1 2.4664 -1.2350 -3.7913 31 1 1.7261 0.1028 -8.0376 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307756406.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:46 Heat of formation + Delta-G solvation = -118.048420 kcal Electronic energy + Delta-G solvation = -14782.094604 eV Core-core repulsion = 12255.110958 eV Total energy + Delta-G solvation = -2526.983646 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.28626 -39.35641 -36.16069 -34.75008 -33.65581 -33.45624 -29.18427 -26.99756 -25.39855 -23.28121 -21.87447 -21.07197 -20.19096 -18.06334 -17.14484 -16.95718 -16.22977 -15.90621 -15.84563 -15.34319 -14.97203 -14.55076 -14.29501 -13.80654 -13.44231 -13.19765 -13.10548 -12.85012 -12.47177 -12.29080 -12.01894 -11.97180 -11.87147 -11.50774 -11.28197 -10.51031 -10.26797 -10.23211 -8.44562 -6.05388 1.26963 1.32102 1.41143 1.87659 2.19649 2.63592 3.07136 3.11413 3.64637 3.81472 3.85461 4.05505 4.18475 4.34056 4.42836 4.51992 4.64936 4.83474 4.85893 4.92526 4.97149 5.07902 5.10952 5.32849 5.42625 5.51033 5.92543 6.28484 6.53485 6.83336 7.34401 7.89298 8.72768 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.041931 B = 0.009309 C = 0.008016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.595665 B = 3007.075057 C = 3492.211313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.118 3.882 3 H 0.046 0.954 4 O -0.389 6.389 5 C 0.049 3.951 6 C -0.144 4.144 7 C -0.118 4.118 8 C -0.123 4.123 9 H 0.109 0.891 10 C 0.458 3.542 11 O -0.614 6.614 12 N -0.585 5.585 13 C -0.330 4.330 14 H 0.059 0.941 15 C -0.012 4.012 16 N -0.931 5.931 17 Si 0.959 3.041 18 H -0.257 1.257 19 H -0.272 1.272 20 H -0.233 1.233 21 H 0.064 0.936 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.050 0.950 25 H 0.121 0.879 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.388 0.612 31 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.797 -8.791 14.023 18.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.059 3.941 3 H 0.064 0.936 4 O -0.308 6.308 5 C -0.027 4.027 6 C -0.182 4.182 7 C -0.156 4.156 8 C -0.144 4.144 9 H 0.127 0.873 10 C 0.246 3.754 11 O -0.499 6.499 12 N -0.225 5.225 13 C -0.459 4.459 14 H 0.077 0.923 15 C -0.211 4.211 16 N -0.571 5.571 17 Si 0.779 3.221 18 H -0.181 1.181 19 H -0.197 1.197 20 H -0.156 1.156 21 H 0.083 0.917 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.068 0.932 25 H 0.138 0.862 26 H 0.101 0.899 27 H 0.120 0.880 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.223 0.777 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.219 -8.175 14.003 17.749 hybrid contribution 0.376 -0.174 -1.091 1.167 sum 7.595 -8.349 12.912 17.150 Atomic orbital electron populations 1.21873 0.92941 1.02688 1.02957 1.21557 0.95468 0.93841 0.83200 0.93563 1.87905 1.22719 1.78035 1.42184 1.22866 0.79917 1.00303 0.99646 1.22182 1.02590 1.00409 0.92987 1.21683 0.91759 1.01851 1.00319 1.21846 0.98881 1.01104 0.92601 0.87272 1.20597 0.83273 0.86665 0.84834 1.90497 1.43599 1.28993 1.86843 1.42049 1.49106 1.26190 1.05147 1.19049 1.32692 1.09641 0.84540 0.92289 1.26078 0.98849 1.02366 0.93798 1.69797 1.46605 1.41800 0.98910 0.85453 0.79046 0.77704 0.79946 1.18105 1.19708 1.15594 0.91733 0.91356 0.91352 0.93184 0.86153 0.89941 0.88011 0.90378 0.92282 0.77651 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.95 9.28 71.98 0.67 -4.28 16 2 C 0.12 3.87 2.40 30.62 0.07 3.95 16 3 H 0.05 1.68 8.04 -2.38 -0.02 1.66 16 4 O -0.39 -10.94 10.41 -148.98 -1.55 -12.49 16 5 C 0.05 1.00 6.84 72.02 0.49 1.49 16 6 C -0.14 -2.74 6.14 30.69 0.19 -2.56 16 7 C -0.12 -3.17 5.18 30.71 0.16 -3.01 16 8 C -0.12 -4.08 2.24 -11.45 -0.03 -4.11 16 9 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 10 C 0.46 20.97 6.83 87.66 0.60 21.57 16 11 O -0.61 -33.45 13.39 -3.06 -0.04 -33.50 16 12 N -0.58 -27.90 5.00 -306.98 -1.53 -29.44 16 13 C -0.33 -19.33 10.16 84.04 0.85 -18.48 16 14 H 0.06 4.09 7.39 -2.91 -0.02 4.07 16 15 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 16 N -0.93 -55.89 13.96 21.66 0.30 -55.59 16 17 Si 0.96 38.71 27.74 68.60 1.90 40.61 16 18 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 19 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 20 H -0.23 -7.94 6.52 99.48 0.65 -7.29 16 21 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 22 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.07 2.78 5.73 -2.39 -0.01 2.76 16 24 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.08 1.96 7.67 -2.39 -0.02 1.95 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.39 15.60 5.25 -92.70 -0.49 15.11 16 31 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -71.13 253.30 3.13 -67.99 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.58 Total: 28.02 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 3.48 Total: -5.61 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -1.23 Total: -85.03 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: -1.59 Total: -45.99 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 1.90 Total: 40.61 kcal Total: -71.13 3.13 -67.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307756406.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.056 kcal (2) G-P(sol) polarization free energy of solvation -71.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds