Wall clock time and date at job start Sun Mar 29 2020 22:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99717 * 2 1 4 4 H 1.48499 * 109.46967 * 269.99384 * 3 2 1 5 5 H 1.48494 * 109.47431 * 29.99872 * 3 2 1 6 6 H 1.48504 * 109.46857 * 149.99870 * 3 2 1 7 7 C 1.37875 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99941 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99857 * 359.72866 * 7 2 1 10 10 N 1.46901 * 109.47025 * 174.99821 * 9 7 2 11 11 C 1.46846 * 110.99940 * 300.69388 * 10 9 7 12 12 C 1.53043 * 109.52705 * 185.84048 * 11 10 9 13 13 C 1.53119 * 109.27293 * 300.82276 * 12 11 10 14 14 C 1.53004 * 109.56947 * 177.59059 * 13 12 11 15 15 C 1.52998 * 109.47230 * 65.28285 * 14 13 12 16 16 O 1.42906 * 109.46916 * 179.97438 * 15 14 13 17 17 C 1.53117 * 109.16405 * 57.65542 * 13 12 11 18 18 C 1.46846 * 111.00467 * 64.90491 * 10 9 7 19 19 H 0.97005 * 120.00330 * 0.02562 * 1 2 3 20 20 H 1.09006 * 109.47380 * 294.99570 * 9 7 2 21 21 H 1.09000 * 109.47417 * 54.99673 * 9 7 2 22 22 H 1.08998 * 109.46431 * 305.85781 * 11 10 9 23 23 H 1.09001 * 109.46282 * 65.82305 * 11 10 9 24 24 H 1.08994 * 109.50185 * 180.87989 * 12 11 10 25 25 H 1.08996 * 109.49882 * 60.75716 * 12 11 10 26 26 H 1.08997 * 109.52509 * 297.74499 * 13 12 11 27 27 H 1.09003 * 109.46693 * 185.28318 * 14 13 12 28 28 H 1.08996 * 109.47321 * 305.27862 * 14 13 12 29 29 H 1.08995 * 109.47115 * 299.99918 * 15 14 13 30 30 H 1.09000 * 109.47039 * 60.00275 * 15 14 13 31 31 H 0.96701 * 113.99735 * 179.97438 * 16 15 14 32 32 H 1.09002 * 109.50148 * 182.40235 * 17 13 12 33 33 H 1.08994 * 109.53641 * 62.30127 * 17 13 12 34 34 H 1.09006 * 109.45826 * 294.17926 * 18 10 9 35 35 H 1.09003 * 109.46067 * 54.15415 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0073 10 7 2.2006 -3.6133 -0.1142 11 6 2.9779 -3.5093 -1.3557 12 6 3.8489 -4.7570 -1.5200 13 6 4.7877 -4.8800 -0.3166 14 6 5.6198 -6.1576 -0.4443 15 6 6.5432 -6.0456 -1.6591 16 8 7.3208 -7.2386 -1.7779 17 6 3.9548 -4.9380 0.9669 18 6 3.0808 -3.6851 1.0590 19 1 -0.4851 0.8401 -0.0004 20 1 0.6971 -2.5940 0.9413 21 1 0.5554 -2.5214 -0.8316 22 1 2.2984 -3.4265 -2.2039 23 1 3.6142 -2.6253 -1.3128 24 1 4.4373 -4.6722 -2.4335 25 1 3.2125 -5.6400 -1.5768 26 1 5.4507 -4.0155 -0.2819 27 1 6.2189 -6.2925 0.4563 28 1 4.9557 -7.0127 -0.5704 29 1 5.9442 -5.9106 -2.5596 30 1 7.2074 -5.1905 -1.5329 31 1 7.9301 -7.2378 -2.5289 32 1 4.6190 -4.9826 1.8300 33 1 3.3201 -5.8239 0.9498 34 1 3.7166 -2.8002 1.0906 35 1 2.4759 -3.7302 1.9646 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308092519.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:01 Heat of formation + Delta-G solvation = -72.212203 kcal Electronic energy + Delta-G solvation = -14668.195526 eV Core-core repulsion = 12279.032582 eV Total energy + Delta-G solvation = -2389.162944 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.70965 -36.91173 -34.44024 -32.33703 -30.25495 -29.44518 -26.30007 -24.07924 -22.57909 -21.80271 -20.40183 -19.14369 -17.39861 -16.40318 -15.28812 -15.08638 -14.36198 -14.13290 -14.04934 -13.66851 -13.27226 -12.73800 -12.43599 -11.74028 -11.66219 -11.59104 -11.27056 -11.04108 -10.86590 -10.53217 -10.34663 -10.28088 -10.11471 -10.05010 -9.74476 -9.61290 -9.40315 -8.42939 -7.12324 -6.01905 -4.11431 3.26282 3.33328 3.35936 4.15170 4.40150 4.94570 5.01010 5.10493 5.27297 5.29124 5.40843 5.48487 5.56688 5.85288 5.88479 6.02668 6.10409 6.13645 6.18487 6.36604 6.44513 6.54314 6.58087 6.74543 6.80748 6.95430 7.33170 7.51787 7.53682 7.90845 8.10862 8.31728 8.36678 8.99653 9.55341 11.02751 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.046895 B = 0.006625 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.929932 B = 4225.121348 C = 4441.202432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.056 0.944 9 C 0.186 3.814 10 N -0.542 5.542 11 C 0.065 3.935 12 C -0.113 4.113 13 C -0.084 4.084 14 C -0.112 4.112 15 C 0.073 3.927 16 O -0.579 6.579 17 C -0.109 4.109 18 C 0.063 3.937 19 H 0.262 0.738 20 H 0.027 0.973 21 H 0.034 0.966 22 H 0.063 0.937 23 H 0.037 0.963 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.376 0.624 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.035 0.965 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.771 -9.504 -2.596 14.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.587 4.587 8 H 0.074 0.926 9 C 0.060 3.940 10 N -0.266 5.266 11 C -0.064 4.064 12 C -0.151 4.151 13 C -0.103 4.103 14 C -0.149 4.149 15 C -0.005 4.005 16 O -0.384 6.384 17 C -0.147 4.147 18 C -0.066 4.066 19 H 0.072 0.928 20 H 0.045 0.955 21 H 0.052 0.948 22 H 0.082 0.918 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.222 0.778 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.978 -9.979 -2.069 14.263 hybrid contribution 1.200 2.087 -0.485 2.456 sum 11.178 -7.892 -2.555 13.920 Atomic orbital electron populations 1.69946 1.06003 1.26787 1.50256 1.24966 0.94758 0.99102 0.94975 0.86659 0.79907 0.83718 0.78119 1.20647 1.21109 1.20017 1.21763 0.93301 0.92167 1.51512 0.92582 1.19747 0.90969 0.85533 0.97721 1.62434 1.17304 1.46151 1.00728 1.21826 0.95676 0.95158 0.93721 1.21753 0.97291 0.99699 0.96348 1.21129 0.96286 0.96373 0.96521 1.21567 0.97437 0.98865 0.97071 1.22329 0.93111 0.86199 0.98845 1.86473 1.57645 1.40720 1.53569 1.21644 0.97633 0.99539 0.95870 1.21851 0.94823 0.95397 0.94515 0.92824 0.95526 0.94788 0.91820 0.94506 0.92676 0.91718 0.91619 0.91687 0.91323 0.93256 0.93889 0.77821 0.92575 0.91699 0.94687 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.55 -15.16 7.72 -34.44 -0.27 -15.42 16 8 H 0.06 1.54 5.86 -52.49 -0.31 1.23 16 9 C 0.19 4.86 5.12 -4.98 -0.03 4.83 16 10 N -0.54 -11.81 4.86 -236.11 -1.15 -12.96 16 11 C 0.06 1.28 5.03 -3.83 -0.02 1.26 16 12 C -0.11 -1.74 5.08 -26.65 -0.14 -1.88 16 13 C -0.08 -1.22 2.25 -90.50 -0.20 -1.42 16 14 C -0.11 -1.41 5.06 -26.73 -0.14 -1.55 16 15 C 0.07 0.82 6.81 37.16 0.25 1.07 16 16 O -0.58 -6.51 13.66 -35.23 -0.48 -6.99 16 17 C -0.11 -1.70 5.38 -26.65 -0.14 -1.84 16 18 C 0.06 1.23 5.12 -3.84 -0.02 1.21 16 19 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 20 H 0.03 0.74 8.08 -51.93 -0.42 0.32 16 21 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 22 H 0.06 1.28 8.12 -51.93 -0.42 0.86 16 23 H 0.04 0.78 6.73 -51.93 -0.35 0.43 16 24 H 0.05 0.74 6.71 -51.93 -0.35 0.40 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.53 6.64 -51.93 -0.34 0.18 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.38 2.41 9.12 45.56 0.42 2.83 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.03 0.74 6.86 -51.93 -0.36 0.39 16 35 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 LS Contribution 275.32 15.07 4.15 4.15 Total: -1.00 -30.30 275.32 -7.62 -37.93 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -5.07 Total: -0.94 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -0.79 Total: -12.02 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: -0.41 Total: -38.58 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.48 Total: -6.99 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.30 -7.62 -37.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308092519.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.283 kcal (2) G-P(sol) polarization free energy of solvation -30.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds