Wall clock time and date at job start Sun Mar 29 2020 22:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99717 * 2 1 4 4 H 1.48499 * 109.46967 * 269.99384 * 3 2 1 5 5 H 1.48494 * 109.47431 * 29.99872 * 3 2 1 6 6 H 1.48504 * 109.46857 * 149.99870 * 3 2 1 7 7 C 1.37875 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99941 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99857 * 359.72866 * 7 2 1 10 10 N 1.46901 * 109.47025 * 174.99821 * 9 7 2 11 11 C 1.46846 * 110.99940 * 300.69388 * 10 9 7 12 12 C 1.53043 * 109.52705 * 185.84048 * 11 10 9 13 13 C 1.53119 * 109.27293 * 300.82276 * 12 11 10 14 14 C 1.53004 * 109.56947 * 177.59059 * 13 12 11 15 15 C 1.52998 * 109.47230 * 65.28285 * 14 13 12 16 16 O 1.42906 * 109.46916 * 179.97438 * 15 14 13 17 17 C 1.53117 * 109.16405 * 57.65542 * 13 12 11 18 18 C 1.46846 * 111.00467 * 64.90491 * 10 9 7 19 19 H 0.97005 * 120.00330 * 0.02562 * 1 2 3 20 20 H 1.09006 * 109.47380 * 294.99570 * 9 7 2 21 21 H 1.09000 * 109.47417 * 54.99673 * 9 7 2 22 22 H 1.08998 * 109.46431 * 305.85781 * 11 10 9 23 23 H 1.09001 * 109.46282 * 65.82305 * 11 10 9 24 24 H 1.08994 * 109.50185 * 180.87989 * 12 11 10 25 25 H 1.08996 * 109.49882 * 60.75716 * 12 11 10 26 26 H 1.08997 * 109.52509 * 297.74499 * 13 12 11 27 27 H 1.09003 * 109.46693 * 185.28318 * 14 13 12 28 28 H 1.08996 * 109.47321 * 305.27862 * 14 13 12 29 29 H 1.08995 * 109.47115 * 299.99918 * 15 14 13 30 30 H 1.09000 * 109.47039 * 60.00275 * 15 14 13 31 31 H 0.96701 * 113.99735 * 179.97438 * 16 15 14 32 32 H 1.09002 * 109.50148 * 182.40235 * 17 13 12 33 33 H 1.08994 * 109.53641 * 62.30127 * 17 13 12 34 34 H 1.09006 * 109.45826 * 294.17926 * 18 10 9 35 35 H 1.09003 * 109.46067 * 54.15415 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0073 10 7 2.2006 -3.6133 -0.1142 11 6 2.9779 -3.5093 -1.3557 12 6 3.8489 -4.7570 -1.5200 13 6 4.7877 -4.8800 -0.3166 14 6 5.6198 -6.1576 -0.4443 15 6 6.5432 -6.0456 -1.6591 16 8 7.3208 -7.2386 -1.7779 17 6 3.9548 -4.9380 0.9669 18 6 3.0808 -3.6851 1.0590 19 1 -0.4851 0.8401 -0.0004 20 1 0.6971 -2.5940 0.9413 21 1 0.5554 -2.5214 -0.8316 22 1 2.2984 -3.4265 -2.2039 23 1 3.6142 -2.6253 -1.3128 24 1 4.4373 -4.6722 -2.4335 25 1 3.2125 -5.6400 -1.5768 26 1 5.4507 -4.0155 -0.2819 27 1 6.2189 -6.2925 0.4563 28 1 4.9557 -7.0127 -0.5704 29 1 5.9442 -5.9106 -2.5596 30 1 7.2074 -5.1905 -1.5329 31 1 7.9301 -7.2378 -2.5289 32 1 4.6190 -4.9826 1.8300 33 1 3.3201 -5.8239 0.9498 34 1 3.7166 -2.8002 1.0906 35 1 2.4759 -3.7302 1.9646 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308092519.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:01 Heat of formation + Delta-G solvation = -94.750472 kcal Electronic energy + Delta-G solvation = -14669.172858 eV Core-core repulsion = 12279.032582 eV Total energy + Delta-G solvation = -2390.140276 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.13111 -37.91137 -35.96176 -34.29578 -31.69794 -30.84988 -28.13842 -25.62686 -24.09772 -23.31841 -21.74407 -20.61179 -18.51869 -18.20259 -16.93493 -16.26565 -15.92343 -15.79784 -15.25588 -15.11917 -14.73538 -14.32061 -13.97784 -13.31992 -13.19721 -12.99946 -12.89016 -12.63032 -12.36394 -12.07397 -12.01543 -11.96930 -11.81230 -11.46939 -11.10751 -10.99772 -10.71465 -10.61912 -9.00402 -8.16037 -6.37130 1.35360 1.35869 1.46586 2.35694 3.07564 3.31942 3.42586 3.87124 3.93231 4.17133 4.33155 4.41269 4.45542 4.60495 4.65071 4.67784 4.77962 4.94016 4.95642 5.06091 5.11424 5.17142 5.23955 5.28521 5.29753 5.34061 5.39851 5.58489 5.73052 6.05438 6.27773 6.59809 6.84840 6.93793 7.34691 8.85767 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.046895 B = 0.006625 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.929932 B = 4225.121348 C = 4441.202432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.011 3.989 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.557 4.557 8 H 0.056 0.944 9 C 0.198 3.802 10 N -0.544 5.544 11 C 0.065 3.935 12 C -0.103 4.103 13 C -0.079 4.079 14 C -0.105 4.105 15 C 0.073 3.927 16 O -0.596 6.596 17 C -0.101 4.101 18 C 0.063 3.937 19 H 0.265 0.735 20 H 0.001 0.999 21 H 0.005 0.995 22 H 0.051 0.949 23 H 0.018 0.982 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.396 0.604 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.016 0.984 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.911 -9.952 -2.961 16.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.596 4.596 8 H 0.074 0.926 9 C 0.071 3.929 10 N -0.268 5.268 11 C -0.064 4.064 12 C -0.140 4.140 13 C -0.097 4.097 14 C -0.142 4.142 15 C -0.004 4.004 16 O -0.404 6.404 17 C -0.138 4.138 18 C -0.066 4.066 19 H 0.074 0.926 20 H 0.019 0.981 21 H 0.023 0.977 22 H 0.070 0.930 23 H 0.037 0.963 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.246 0.754 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.035 0.965 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.146 -10.448 -2.449 16.207 hybrid contribution 0.515 2.183 -0.377 2.274 sum 12.661 -8.265 -2.825 15.382 Atomic orbital electron populations 1.70072 1.07636 1.27921 1.51072 1.25848 0.95628 1.02935 0.94464 0.85545 0.78630 0.78983 0.78476 1.19763 1.20544 1.19258 1.21973 0.93339 0.92967 1.51286 0.92594 1.19415 0.91409 0.87024 0.95055 1.62385 1.17979 1.43814 1.02586 1.21885 0.95435 0.96920 0.92144 1.21689 0.96995 0.97151 0.98182 1.21054 0.96002 0.97581 0.95109 1.21439 0.97385 0.97261 0.98157 1.22269 0.93246 0.86563 0.98317 1.86413 1.58265 1.40667 1.55053 1.21593 0.97439 0.97071 0.97732 1.21912 0.94525 0.96969 0.93181 0.92561 0.98111 0.97658 0.93043 0.96331 0.90095 0.91386 0.91780 0.91297 0.91542 0.92604 0.93069 0.75436 0.90311 0.91265 0.96532 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.96 13.29 21.45 0.28 -55.67 16 2 C 0.01 0.60 5.46 84.65 0.46 1.06 16 3 Si 0.96 44.17 29.54 68.60 2.03 46.19 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.56 -31.43 7.72 25.60 0.20 -31.23 16 8 H 0.06 3.11 5.86 -2.91 -0.02 3.09 16 9 C 0.20 10.76 5.12 85.56 0.44 11.20 16 10 N -0.54 -24.12 4.86 -900.92 -4.38 -28.49 16 11 C 0.06 2.54 5.03 86.33 0.43 2.97 16 12 C -0.10 -2.96 5.08 30.65 0.16 -2.80 16 13 C -0.08 -2.08 2.25 -10.71 -0.02 -2.10 16 14 C -0.10 -2.32 5.06 30.59 0.15 -2.16 16 15 C 0.07 1.41 6.81 71.98 0.49 1.90 16 16 O -0.60 -11.52 13.66 -148.98 -2.04 -13.55 16 17 C -0.10 -2.95 5.38 30.64 0.16 -2.78 16 18 C 0.06 2.46 5.12 86.32 0.44 2.90 16 19 H 0.27 15.03 8.31 -92.70 -0.77 14.26 16 20 H 0.00 0.04 8.08 -2.38 -0.02 0.03 16 21 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 22 H 0.05 2.10 8.12 -2.39 -0.02 2.08 16 23 H 0.02 0.79 6.73 -2.39 -0.02 0.77 16 24 H 0.08 1.95 6.71 -2.39 -0.02 1.93 16 25 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.00 6.64 -2.39 -0.02 0.98 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.40 3.85 9.12 -74.06 -0.68 3.17 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.02 0.70 6.86 -2.38 -0.02 0.69 16 35 H 0.05 2.18 8.08 -2.39 -0.02 2.16 16 Total: -1.00 -65.40 275.32 -0.81 -66.20 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 0.38 Total: 6.37 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 2.92 Total: -21.05 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -4.09 Total: -84.17 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -2.04 Total: -13.55 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -65.40 -0.81 -66.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308092519.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.547 kcal (2) G-P(sol) polarization free energy of solvation -65.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds