Wall clock time and date at job start Sun Mar 29 2020 22:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99992 * 2 1 4 4 H 1.48497 * 109.47186 * 270.00014 * 3 2 1 5 5 H 1.48496 * 109.47048 * 30.00493 * 3 2 1 6 6 H 1.48499 * 109.46948 * 150.00213 * 3 2 1 7 7 C 1.37878 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00079 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00058 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47303 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.47484 * 174.83964 * 10 9 7 12 12 C 1.46898 * 111.00091 * 75.87607 * 11 10 9 13 13 C 1.52997 * 109.47576 * 190.00286 * 12 11 10 14 14 C 1.52994 * 109.47538 * 180.02562 * 13 12 11 15 15 O 1.42903 * 109.47411 * 180.02562 * 14 13 12 16 16 C 1.46894 * 111.00254 * 199.83337 * 11 10 9 17 17 C 1.53002 * 117.50001 * 130.32594 * 16 11 10 18 18 C 1.53001 * 60.00049 * 252.50863 * 17 16 11 19 19 H 0.96994 * 120.00044 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.47277 * 59.99699 * 9 7 2 21 21 H 1.09004 * 109.47272 * 299.99885 * 9 7 2 22 22 H 1.09002 * 109.47105 * 294.83629 * 10 9 7 23 23 H 1.08998 * 109.46964 * 54.83509 * 10 9 7 24 24 H 1.09004 * 109.47404 * 310.00363 * 12 11 10 25 25 H 1.08997 * 109.46863 * 70.00256 * 12 11 10 26 26 H 1.09004 * 109.46817 * 300.00436 * 13 12 11 27 27 H 1.09005 * 109.47218 * 59.99906 * 13 12 11 28 28 H 1.09004 * 109.47194 * 299.99925 * 14 13 12 29 29 H 1.08997 * 109.47111 * 59.99841 * 14 13 12 30 30 H 0.96700 * 114.00349 * 180.02562 * 15 14 13 31 31 H 1.09004 * 115.55237 * 276.03486 * 16 11 10 32 32 H 1.09005 * 117.49892 * 0.02562 * 17 16 11 33 33 H 1.09003 * 117.49924 * 145.02296 * 17 16 11 34 34 H 1.08995 * 117.50062 * 252.50538 * 18 17 16 35 35 H 1.09002 * 117.51373 * 107.48035 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5151 -4.9306 0.1240 12 6 0.8730 -5.2954 -1.1458 13 6 -0.0739 -6.4754 -0.9182 14 6 -0.7422 -6.8556 -2.2409 15 8 -1.6271 -7.9574 -2.0282 16 6 2.4011 -6.0042 0.5934 17 6 1.9191 -6.8538 1.7710 18 6 3.0448 -5.8372 1.9713 19 1 -0.4850 0.8400 0.0004 20 1 0.6240 -2.5567 -0.8902 21 1 0.6247 -2.5571 0.8897 22 1 2.8095 -3.6578 -0.9332 23 1 2.9312 -3.5537 0.8396 24 1 0.3078 -4.4439 -1.5250 25 1 1.6363 -5.5768 -1.8712 26 1 0.4912 -7.3268 -0.5390 27 1 -0.8373 -6.1939 -0.1928 28 1 -1.3073 -6.0043 -2.6205 29 1 0.0214 -7.1372 -2.9660 30 1 -2.0862 -8.2530 -2.8262 31 1 2.9878 -6.5011 -0.1793 32 1 0.9443 -6.6164 2.1973 33 1 2.1885 -7.9100 1.7732 34 1 4.0548 -6.2245 2.1053 35 1 2.8112 -4.9305 2.5294 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308097375.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:47 Heat of formation + Delta-G solvation = -59.398409 kcal Electronic energy + Delta-G solvation = -14310.024933 eV Core-core repulsion = 11921.417637 eV Total energy + Delta-G solvation = -2388.607296 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.73785 -37.85974 -36.05301 -34.95784 -33.07939 -30.55668 -26.79914 -25.44581 -23.31692 -22.61672 -22.29936 -20.94968 -18.55503 -18.31492 -16.98506 -16.80814 -16.49408 -15.93516 -15.50391 -15.11725 -14.45097 -14.24344 -14.06207 -13.55263 -13.22052 -12.96449 -12.67867 -12.42402 -12.33947 -12.19263 -12.03372 -11.73420 -11.60528 -11.30051 -11.16496 -10.90310 -10.78314 -10.53905 -9.17060 -8.19602 -6.31287 1.40215 1.42022 1.53176 2.39945 2.80421 2.96852 3.13627 3.46364 3.98275 4.07653 4.12578 4.23464 4.34171 4.35552 4.40079 4.54840 4.58787 4.73924 4.81378 4.82643 4.87721 5.07843 5.13116 5.22454 5.27950 5.36625 5.46834 5.64617 5.79524 6.12176 6.32898 6.38192 6.86021 6.91562 7.37918 8.92578 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028323 B = 0.006972 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.363993 B = 4014.844023 C = 4779.663956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.039 3.961 10 C 0.083 3.917 11 N -0.528 5.528 12 C 0.067 3.933 13 C -0.103 4.103 14 C 0.080 3.920 15 O -0.592 6.592 16 C -0.009 4.009 17 C -0.152 4.152 18 C -0.173 4.173 19 H 0.263 0.737 20 H -0.010 1.010 21 H -0.011 1.011 22 H 0.022 0.978 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.398 0.602 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.087 -14.309 -2.890 14.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.079 0.921 9 C 0.002 3.998 10 C -0.044 4.044 11 N -0.252 5.252 12 C -0.061 4.061 13 C -0.141 4.141 14 C 0.002 3.998 15 O -0.401 6.401 16 C -0.117 4.117 17 C -0.189 4.189 18 C -0.210 4.210 19 H 0.072 0.928 20 H 0.008 0.992 21 H 0.008 0.992 22 H 0.041 0.959 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.248 0.752 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.792 -14.066 -1.934 14.470 hybrid contribution 0.393 1.057 -1.144 1.606 sum 3.185 -13.009 -3.079 13.742 Atomic orbital electron populations 1.70118 1.07879 1.27754 1.51478 1.25979 0.95740 1.03366 0.94622 0.85417 0.78638 0.78271 0.78528 1.19660 1.20777 1.18674 1.21620 0.93509 0.92229 1.50852 0.92145 1.18888 0.94165 0.92023 0.94748 1.21953 0.95406 0.88098 0.98929 1.61732 1.31474 1.02151 1.29809 1.21911 0.96772 0.97525 0.89914 1.21323 0.98111 0.97324 0.97351 1.22074 0.92446 0.88565 0.96709 1.86415 1.61799 1.51575 1.40274 1.22524 0.99647 0.97550 0.91984 1.23064 0.98562 0.96900 1.00400 1.23058 0.98654 1.01371 0.97959 0.92786 0.99178 0.99241 0.95937 0.91772 0.92483 0.93923 0.90795 0.92865 0.93534 0.91970 0.75247 0.88709 0.89821 0.86508 0.86570 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.82 13.29 21.45 0.28 -57.54 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 44.68 29.54 68.60 2.03 46.70 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.54 -31.55 9.11 25.60 0.23 -31.32 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.04 2.16 5.01 29.85 0.15 2.31 16 10 C 0.08 3.63 4.89 86.30 0.42 4.05 16 11 N -0.53 -19.71 4.57 -871.00 -3.98 -23.69 16 12 C 0.07 2.24 4.78 86.30 0.41 2.65 16 13 C -0.10 -3.00 5.55 30.59 0.17 -2.83 16 14 C 0.08 1.90 7.05 71.98 0.51 2.41 16 15 O -0.59 -13.64 13.66 -148.98 -2.04 -15.67 16 16 C -0.01 -0.25 4.18 44.92 0.19 -0.07 16 17 C -0.15 -3.88 10.00 30.60 0.31 -3.57 16 18 C -0.17 -4.71 9.55 30.60 0.29 -4.41 16 19 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 20 H -0.01 -0.59 6.96 -2.39 -0.02 -0.61 16 21 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 22 H 0.02 0.96 8.00 -2.39 -0.02 0.94 16 23 H 0.06 2.76 6.79 -2.39 -0.02 2.75 16 24 H 0.06 2.20 6.73 -2.39 -0.02 2.18 16 25 H 0.04 1.28 8.09 -2.39 -0.02 1.26 16 26 H 0.07 2.04 7.02 -2.39 -0.02 2.02 16 27 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.40 4.97 9.12 -74.06 -0.68 4.30 16 31 H 0.10 2.52 8.09 -2.38 -0.02 2.50 16 32 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 33 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.08 2.53 7.72 -2.39 -0.02 2.51 16 Total: -1.00 -68.28 289.51 -0.19 -68.47 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.37 Total: 12.00 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: 3.14 Total: -30.27 kcal Atomic # 7 Polarization: -77.53 SS G_CDS: -3.69 Total: -81.23 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -2.04 Total: -15.67 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -68.28 -0.19 -68.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308097375.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.068 kcal (2) G-P(sol) polarization free energy of solvation -68.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds