Wall clock time and date at job start Sun Mar 29 2020 22:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00293 * 2 1 4 4 H 1.48492 * 109.47105 * 239.99932 * 3 2 1 5 5 H 1.48506 * 109.46591 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46975 * 119.99512 * 3 2 1 7 7 C 1.37884 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00408 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99581 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46810 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.46905 * 179.97438 * 10 9 7 12 12 C 1.46900 * 111.00030 * 179.97438 * 11 10 9 13 13 H 1.08993 * 108.94348 * 33.76608 * 12 11 10 14 14 C 1.46284 * 108.96309 * 152.44647 * 12 11 10 15 15 C 1.54198 * 112.07449 * 181.56060 * 14 12 11 16 16 C 1.50417 * 108.77027 * 282.18508 * 15 14 12 17 17 O 1.44183 * 112.77283 * 92.57913 * 16 15 14 18 18 C 1.44333 * 117.02792 * 318.39326 * 17 16 15 19 19 C 1.50416 * 112.69350 * 318.69636 * 18 17 16 20 20 H 0.96993 * 119.99729 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.46930 * 59.99331 * 9 7 2 22 22 H 1.09005 * 109.46676 * 299.99839 * 9 7 2 23 23 H 1.08995 * 109.47353 * 60.00263 * 10 9 7 24 24 H 1.08996 * 109.47184 * 299.99532 * 10 9 7 25 25 H 1.00909 * 110.99989 * 56.04551 * 11 10 9 26 26 H 1.09004 * 108.96191 * 302.23343 * 14 12 11 27 27 H 1.09006 * 108.95977 * 60.97571 * 14 12 11 28 28 H 1.08994 * 109.58929 * 41.97702 * 15 14 12 29 29 H 1.09009 * 109.58822 * 162.40150 * 15 14 12 30 30 H 1.09001 * 108.81941 * 213.42993 * 16 15 14 31 31 H 1.09007 * 108.82039 * 331.83684 * 16 15 14 32 32 H 1.09009 * 109.05191 * 197.74538 * 18 17 16 33 33 H 1.08996 * 108.68209 * 79.39756 * 18 17 16 34 34 H 1.09002 * 109.58781 * 332.55282 * 19 18 17 35 35 H 1.08996 * 109.58679 * 212.27123 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 2.4353 -6.0759 0.0006 13 1 3.3244 -5.8115 0.5729 14 6 1.7817 -7.2172 0.6411 15 6 2.7066 -8.4488 0.7138 16 6 2.7449 -9.1059 -0.6388 17 8 3.8328 -8.6330 -1.4584 18 6 4.1027 -7.2154 -1.4360 19 6 2.8483 -6.3855 -1.4525 20 1 -0.4849 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8904 23 1 2.8719 -3.6044 0.8905 24 1 2.8719 -3.6044 -0.8895 25 1 0.8741 -4.9846 -0.7800 26 1 1.4872 -6.9352 1.6520 27 1 0.8892 -7.4790 0.0726 28 1 3.7115 -8.1351 0.9962 29 1 2.3206 -9.1527 1.4512 30 1 2.8483 -10.1826 -0.5038 31 1 1.8054 -8.9052 -1.1539 32 1 4.7082 -6.9547 -2.3042 33 1 4.6671 -6.9816 -0.5334 34 1 2.0509 -6.9383 -1.9493 35 1 3.0339 -5.4533 -1.9861 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308193920.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:01 Heat of formation + Delta-G solvation = -63.301307 kcal Electronic energy + Delta-G solvation = -14464.538248 eV Core-core repulsion = 12075.761710 eV Total energy + Delta-G solvation = -2388.776538 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.60636 -36.40410 -33.82556 -32.73970 -31.51884 -28.87149 -26.71739 -24.96580 -23.36453 -20.88412 -20.55740 -20.15091 -16.73815 -16.58750 -16.13885 -15.39233 -14.56123 -14.48995 -14.01507 -13.72578 -13.38258 -13.15678 -12.52364 -12.34386 -12.19141 -11.51430 -11.23315 -11.07183 -11.00155 -10.89410 -10.67414 -10.52144 -10.36014 -10.00321 -9.55344 -9.35764 -9.15865 -8.36058 -7.82286 -6.00428 -4.03270 3.32876 3.37270 3.39561 3.71159 4.39124 4.54225 4.67268 4.83192 4.90183 5.08276 5.16460 5.35432 5.39303 5.53093 5.60321 5.65919 5.70094 5.80958 5.96116 6.06054 6.10552 6.27627 6.30792 6.36669 6.49864 6.96448 7.17437 7.47227 7.71460 7.81172 7.94100 8.07265 8.42483 9.03790 9.60567 11.10989 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.065039 B = 0.005346 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.409862 B = 5236.746533 C = 5453.485854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.688 5.688 12 C 0.086 3.914 13 H 0.071 0.929 14 C -0.110 4.110 15 C -0.154 4.154 16 C 0.064 3.936 17 O -0.400 6.400 18 C 0.069 3.931 19 C -0.186 4.186 20 H 0.261 0.739 21 H 0.013 0.987 22 H 0.025 0.975 23 H 0.057 0.943 24 H 0.016 0.984 25 H 0.336 0.664 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.126 -15.652 -0.987 16.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.317 5.317 12 C -0.025 4.025 13 H 0.089 0.911 14 C -0.148 4.148 15 C -0.192 4.192 16 C -0.012 4.012 17 O -0.320 6.320 18 C -0.008 4.008 19 C -0.225 4.225 20 H 0.071 0.929 21 H 0.031 0.969 22 H 0.043 0.957 23 H 0.075 0.925 24 H 0.034 0.966 25 H 0.154 0.846 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.975 -15.628 -0.393 16.406 hybrid contribution 0.588 1.250 -0.784 1.589 sum 5.563 -14.378 -1.177 15.462 Atomic orbital electron populations 1.69959 1.06048 1.26723 1.50532 1.25000 0.94836 0.99207 0.95257 0.86647 0.79573 0.83109 0.78598 1.20293 1.21240 1.20210 1.21141 0.92927 0.91042 1.51068 0.92837 1.19068 0.94032 0.90470 0.97672 1.22192 0.96998 0.88522 0.98536 1.60813 1.19266 1.01979 1.49656 1.20666 0.96039 0.92188 0.93572 0.91121 1.20636 0.98249 0.93662 1.02275 1.21929 1.01314 0.98263 0.97716 1.22311 0.90166 0.98147 0.90613 1.88227 1.53106 1.23139 1.67504 1.22233 0.96452 0.80328 1.01770 1.22717 0.98953 1.01209 0.99629 0.92919 0.96865 0.95693 0.92456 0.96607 0.84593 0.90797 0.91995 0.90887 0.90491 0.89951 0.93191 0.89778 0.93166 0.90778 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.90 9.11 -34.43 -0.31 -15.22 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.65 5.23 -27.88 -0.15 0.51 16 10 C 0.07 1.37 5.37 -3.83 -0.02 1.35 16 11 N -0.69 -12.08 6.17 -109.47 -0.68 -12.75 16 12 C 0.09 1.21 2.03 -70.28 -0.14 1.07 16 13 H 0.07 1.05 7.17 -51.93 -0.37 0.68 16 14 C -0.11 -1.35 4.85 -29.30 -0.14 -1.49 16 15 C -0.15 -1.57 5.61 -27.39 -0.15 -1.73 16 16 C 0.06 0.67 6.27 35.87 0.22 0.90 16 17 O -0.40 -5.12 10.88 -35.23 -0.38 -5.51 16 18 C 0.07 0.83 6.28 35.87 0.23 1.05 16 19 C -0.19 -2.39 4.88 -27.39 -0.13 -2.53 16 20 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 21 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 1.21 8.04 -51.93 -0.42 0.80 16 24 H 0.02 0.32 7.30 -51.93 -0.38 -0.06 16 25 H 0.34 5.76 8.46 -39.29 -0.33 5.43 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.75 7.55 -51.93 -0.39 0.35 16 28 H 0.07 0.78 7.16 -51.93 -0.37 0.41 16 29 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.52 6.67 -51.93 -0.35 0.18 16 32 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 33 H 0.05 0.59 6.69 -51.93 -0.35 0.25 16 34 H 0.07 0.94 7.15 -51.93 -0.37 0.57 16 35 H 0.08 1.10 7.22 -51.93 -0.37 0.72 16 LS Contribution 274.59 15.07 4.14 4.14 Total: -1.00 -30.11 274.59 -7.69 -37.80 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.78 Total: 0.43 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -0.70 Total: -14.49 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.06 Total: -39.05 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.38 Total: -5.51 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.11 -7.69 -37.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308193920.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.503 kcal (2) G-P(sol) polarization free energy of solvation -30.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds