Wall clock time and date at job start Sun Mar 29 2020 22:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00293 * 2 1 4 4 H 1.48492 * 109.47105 * 239.99932 * 3 2 1 5 5 H 1.48506 * 109.46591 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46975 * 119.99512 * 3 2 1 7 7 C 1.37884 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00408 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99581 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46810 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.46905 * 179.97438 * 10 9 7 12 12 C 1.46900 * 111.00030 * 179.97438 * 11 10 9 13 13 H 1.08993 * 108.94348 * 33.76608 * 12 11 10 14 14 C 1.46284 * 108.96309 * 152.44647 * 12 11 10 15 15 C 1.54198 * 112.07449 * 181.56060 * 14 12 11 16 16 C 1.50417 * 108.77027 * 282.18508 * 15 14 12 17 17 O 1.44183 * 112.77283 * 92.57913 * 16 15 14 18 18 C 1.44333 * 117.02792 * 318.39326 * 17 16 15 19 19 C 1.50416 * 112.69350 * 318.69636 * 18 17 16 20 20 H 0.96993 * 119.99729 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.46930 * 59.99331 * 9 7 2 22 22 H 1.09005 * 109.46676 * 299.99839 * 9 7 2 23 23 H 1.08995 * 109.47353 * 60.00263 * 10 9 7 24 24 H 1.08996 * 109.47184 * 299.99532 * 10 9 7 25 25 H 1.00909 * 110.99989 * 56.04551 * 11 10 9 26 26 H 1.09004 * 108.96191 * 302.23343 * 14 12 11 27 27 H 1.09006 * 108.95977 * 60.97571 * 14 12 11 28 28 H 1.08994 * 109.58929 * 41.97702 * 15 14 12 29 29 H 1.09009 * 109.58822 * 162.40150 * 15 14 12 30 30 H 1.09001 * 108.81941 * 213.42993 * 16 15 14 31 31 H 1.09007 * 108.82039 * 331.83684 * 16 15 14 32 32 H 1.09009 * 109.05191 * 197.74538 * 18 17 16 33 33 H 1.08996 * 108.68209 * 79.39756 * 18 17 16 34 34 H 1.09002 * 109.58781 * 332.55282 * 19 18 17 35 35 H 1.08996 * 109.58679 * 212.27123 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 2.4353 -6.0759 0.0006 13 1 3.3244 -5.8115 0.5729 14 6 1.7817 -7.2172 0.6411 15 6 2.7066 -8.4488 0.7138 16 6 2.7449 -9.1059 -0.6388 17 8 3.8328 -8.6330 -1.4584 18 6 4.1027 -7.2154 -1.4360 19 6 2.8483 -6.3855 -1.4525 20 1 -0.4849 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8904 23 1 2.8719 -3.6044 0.8905 24 1 2.8719 -3.6044 -0.8895 25 1 0.8741 -4.9846 -0.7800 26 1 1.4872 -6.9352 1.6520 27 1 0.8892 -7.4790 0.0726 28 1 3.7115 -8.1351 0.9962 29 1 2.3206 -9.1527 1.4512 30 1 2.8483 -10.1826 -0.5038 31 1 1.8054 -8.9052 -1.1539 32 1 4.7082 -6.9547 -2.3042 33 1 4.6671 -6.9816 -0.5334 34 1 2.0509 -6.9383 -1.9493 35 1 3.0339 -5.4533 -1.9861 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308193920.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:01 Heat of formation + Delta-G solvation = -83.986826 kcal Electronic energy + Delta-G solvation = -14465.435240 eV Core-core repulsion = 12075.761710 eV Total energy + Delta-G solvation = -2389.673530 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.63664 -37.68151 -35.54389 -34.17176 -32.88408 -30.54872 -27.89634 -26.37458 -24.93664 -22.55953 -21.56693 -21.35229 -18.56238 -17.63039 -17.44839 -16.67138 -16.44342 -15.73397 -15.29594 -15.10893 -14.61755 -14.23202 -14.11452 -13.77885 -13.38037 -13.19408 -12.84757 -12.55234 -12.44722 -12.23965 -12.05623 -11.80525 -11.72485 -11.42833 -11.35532 -11.09506 -10.56938 -10.45948 -9.26675 -8.21121 -6.32967 1.40036 1.43245 1.51252 2.39955 2.83255 3.12341 3.24460 3.61816 3.88137 3.99547 4.12337 4.21224 4.39996 4.45935 4.50608 4.59457 4.63597 4.75696 4.81903 4.89048 5.03214 5.07387 5.11486 5.19321 5.30048 5.36315 5.45294 5.66573 5.78054 6.13366 6.25387 6.30814 6.52398 6.84208 7.36533 8.90883 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.065039 B = 0.005346 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.409862 B = 5236.746533 C = 5453.485854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.031 3.969 10 C 0.085 3.915 11 N -0.694 5.694 12 C 0.088 3.912 13 H 0.065 0.935 14 C -0.108 4.108 15 C -0.144 4.144 16 C 0.058 3.942 17 O -0.414 6.414 18 C 0.070 3.930 19 C -0.177 4.177 20 H 0.264 0.736 21 H -0.009 1.009 22 H -0.007 1.007 23 H 0.055 0.945 24 H 0.021 0.979 25 H 0.338 0.662 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.358 -16.272 -1.039 17.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.079 0.921 9 C -0.006 4.006 10 C -0.044 4.044 11 N -0.324 5.324 12 C -0.021 4.021 13 H 0.084 0.916 14 C -0.146 4.146 15 C -0.182 4.182 16 C -0.017 4.017 17 O -0.335 6.335 18 C -0.006 4.006 19 C -0.216 4.216 20 H 0.073 0.927 21 H 0.009 0.991 22 H 0.011 0.989 23 H 0.073 0.927 24 H 0.039 0.961 25 H 0.156 0.844 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.069 0.931 32 H 0.112 0.888 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.218 -16.275 -0.446 17.428 hybrid contribution 0.155 1.385 -0.759 1.587 sum 6.373 -14.890 -1.205 16.241 Atomic orbital electron populations 1.70098 1.07863 1.27901 1.51327 1.25977 0.95750 1.03384 0.94545 0.85477 0.78255 0.77953 0.79211 1.19103 1.20767 1.19150 1.21591 0.93528 0.92273 1.51112 0.92146 1.18925 0.94336 0.92397 0.94970 1.21787 0.95557 0.88392 0.98615 1.60746 1.19901 1.01717 1.50005 1.20750 0.95270 0.91418 0.94694 0.91641 1.20599 0.98763 0.93846 1.01419 1.21869 1.00575 0.97491 0.98291 1.22483 0.89612 0.99314 0.90319 1.88215 1.53904 1.23168 1.68174 1.22216 0.95880 0.80115 1.02418 1.22594 0.99693 1.00971 0.98312 0.92715 0.99093 0.98870 0.92665 0.96082 0.84382 0.91737 0.91719 0.91215 0.88275 0.87887 0.93149 0.88840 0.92902 0.90419 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.97 44.33 29.54 68.60 2.03 46.35 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 7 C -0.55 -31.43 9.11 25.60 0.23 -31.20 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.68 5.23 29.85 0.16 1.84 16 10 C 0.09 3.60 5.37 86.30 0.46 4.06 16 11 N -0.69 -24.35 6.17 -500.27 -3.09 -27.44 16 12 C 0.09 2.41 2.03 43.25 0.09 2.50 16 13 H 0.07 1.87 7.17 -2.39 -0.02 1.85 16 14 C -0.11 -2.50 4.85 28.93 0.14 -2.36 16 15 C -0.14 -2.60 5.61 30.16 0.17 -2.43 16 16 C 0.06 1.08 6.27 71.15 0.45 1.53 16 17 O -0.41 -9.73 10.88 -148.98 -1.62 -11.35 16 18 C 0.07 1.57 6.28 71.15 0.45 2.02 16 19 C -0.18 -4.33 4.88 30.17 0.15 -4.19 16 20 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 21 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 22 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 23 H 0.05 2.34 8.04 -2.39 -0.02 2.32 16 24 H 0.02 0.86 7.30 -2.39 -0.02 0.84 16 25 H 0.34 11.65 8.46 -89.69 -0.76 10.89 16 26 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.06 1.46 7.55 -2.38 -0.02 1.44 16 28 H 0.07 1.34 7.16 -2.39 -0.02 1.32 16 29 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 0.94 6.67 -2.38 -0.02 0.92 16 32 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.05 1.16 6.69 -2.39 -0.02 1.14 16 34 H 0.08 1.85 7.15 -2.39 -0.02 1.84 16 35 H 0.07 1.85 7.22 -2.39 -0.02 1.83 16 Total: -1.00 -64.20 274.59 0.65 -63.54 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.30 Total: 13.57 kcal Atomic # 6 Polarization: -30.43 SS G_CDS: 2.75 Total: -27.68 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -2.80 Total: -84.43 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -1.62 Total: -11.35 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -64.20 0.65 -63.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308193920.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.444 kcal (2) G-P(sol) polarization free energy of solvation -64.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds