Wall clock time and date at job start Sun Mar 29 2020 21:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47405 * 2 1 4 4 C 1.37098 * 119.99711 * 263.14383 * 3 2 1 5 5 H 1.08003 * 119.99412 * 207.33276 * 4 3 2 6 6 C 1.38950 * 120.00141 * 27.05741 * 4 3 2 7 7 N 1.31413 * 119.99958 * 357.57993 * 6 4 3 8 8 Si 1.86796 * 120.00076 * 177.57732 * 6 4 3 9 9 H 1.48505 * 109.47102 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47123 * 119.99859 * 8 6 4 11 11 H 1.48501 * 109.47577 * 240.00396 * 8 6 4 12 12 C 1.34775 * 120.00160 * 83.13864 * 3 2 1 13 13 O 1.21298 * 120.00101 * 355.28099 * 12 3 2 14 14 C 1.50697 * 120.00041 * 175.28426 * 12 3 2 15 15 C 1.53000 * 113.00039 * 58.79832 * 14 12 3 16 16 C 1.54031 * 113.81620 * 286.80858 * 14 12 3 17 17 O 1.44179 * 85.52174 * 223.19462 * 16 14 12 18 18 C 1.44183 * 93.33780 * 24.19566 * 17 16 14 19 19 H 1.08999 * 109.46997 * 59.17528 * 1 2 3 20 20 H 1.09000 * 109.47007 * 179.18211 * 1 2 3 21 21 H 1.09003 * 109.46999 * 299.17759 * 1 2 3 22 22 H 1.08998 * 109.47529 * 239.99686 * 2 1 3 23 23 H 1.09007 * 109.47450 * 119.99975 * 2 1 3 24 24 H 0.97003 * 119.99783 * 179.97438 * 7 6 4 25 25 H 1.09002 * 109.47413 * 52.61762 * 15 14 12 26 26 H 1.08997 * 109.47003 * 172.62097 * 15 14 12 27 27 H 1.09004 * 109.47105 * 292.61812 * 15 14 12 28 28 H 1.08997 * 113.86927 * 337.34604 * 16 14 12 29 29 H 1.09006 * 113.86638 * 109.04918 * 16 14 12 30 30 H 1.09000 * 113.86405 * 221.66339 * 18 17 16 31 31 H 1.08998 * 113.98375 * 89.96302 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3806 1.9802 -1.1788 5 1 3.1184 2.7689 -1.1794 6 6 1.8026 1.5686 -2.3735 7 7 0.9444 0.5734 -2.3797 8 14 2.2455 2.4299 -3.9708 9 1 3.2274 3.5094 -3.6954 10 1 2.8405 1.4490 -4.9136 11 1 1.0212 3.0158 -4.5733 12 6 2.1116 2.0631 1.1588 13 8 1.7115 1.5646 2.1897 14 6 2.7129 3.4448 1.1738 15 6 1.9717 4.4292 0.2669 16 6 4.2426 3.4594 0.9934 17 8 4.2441 4.4433 2.0473 18 6 2.9876 3.9883 2.5887 19 1 -0.3633 0.5266 -0.8825 20 1 -0.3633 -1.0276 -0.0147 21 1 -0.3633 0.5010 0.8973 22 1 1.8934 -0.5139 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 0.5407 0.2863 -3.2137 25 1 0.9091 4.4175 0.5097 26 1 2.3682 5.4330 0.4195 27 1 2.1097 4.1385 -0.7745 28 1 4.7277 2.5218 1.2647 29 1 4.5692 3.8466 0.0282 30 1 2.3187 4.7950 2.8888 31 1 3.0872 3.2122 3.3476 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308221796.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:35 Heat of formation + Delta-G solvation = -34.929251 kcal Electronic energy + Delta-G solvation = -15321.511551 eV Core-core repulsion = 12798.132223 eV Total energy + Delta-G solvation = -2523.379328 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.43160 -37.86501 -35.02346 -31.81124 -31.45501 -29.24188 -26.05495 -25.81115 -24.76974 -22.60410 -20.13786 -18.62570 -17.28184 -16.30478 -15.49936 -15.02687 -14.76069 -14.24792 -13.75375 -13.40803 -12.94927 -12.43498 -12.01260 -11.79046 -11.76617 -11.43660 -11.25491 -10.98586 -10.78735 -10.61356 -10.54670 -10.24365 -10.00395 -9.76131 -9.23997 -8.81642 -8.28637 -7.64467 -6.33627 -4.04956 3.04783 3.15793 3.17609 3.76000 4.02204 4.21102 4.63777 4.91897 5.03813 5.51183 5.68972 5.85221 5.96677 5.98142 6.35865 6.37727 6.45953 6.55007 6.62647 6.66977 6.79874 6.90973 6.93945 7.07220 7.29274 7.45701 7.82547 7.87650 8.41650 9.00741 9.47815 9.87760 10.60009 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.029490 B = 0.014219 C = 0.010549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.230745 B = 1968.739674 C = 2653.697140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.142 3.858 3 N -0.438 5.438 4 C -0.329 4.329 5 H 0.099 0.901 6 C 0.035 3.965 7 N -0.864 5.864 8 Si 0.919 3.081 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.280 1.280 12 C 0.467 3.533 13 O -0.605 6.605 14 C -0.126 4.126 15 C -0.127 4.127 16 C 0.056 3.944 17 O -0.389 6.389 18 C 0.057 3.943 19 H 0.095 0.905 20 H 0.029 0.971 21 H 0.023 0.977 22 H 0.092 0.908 23 H 0.029 0.971 24 H 0.267 0.733 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.354 3.796 0.324 4.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.019 3.981 3 N -0.155 5.155 4 C -0.457 4.457 5 H 0.117 0.883 6 C -0.169 4.169 7 N -0.503 5.503 8 Si 0.745 3.255 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.205 1.205 12 C 0.255 3.745 13 O -0.492 6.492 14 C -0.129 4.129 15 C -0.184 4.184 16 C -0.021 4.021 17 O -0.308 6.308 18 C -0.020 4.020 19 H 0.113 0.887 20 H 0.048 0.952 21 H 0.042 0.958 22 H 0.110 0.890 23 H 0.047 0.953 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.112 0.888 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.221 3.610 0.710 4.297 hybrid contribution -0.023 0.118 -1.009 1.016 sum 2.198 3.728 -0.299 4.338 Atomic orbital electron populations 1.22153 0.96843 0.99430 1.01864 1.21089 0.94630 0.82972 0.99411 1.43724 1.55286 1.11127 1.05387 1.19732 1.22672 1.19418 0.83897 0.88334 1.25381 0.95320 0.96536 0.99643 1.70071 1.27690 1.25550 1.27005 0.85987 0.78488 0.79336 0.81669 1.19214 1.20660 1.20536 1.19942 0.83559 0.86731 0.84258 1.90522 1.54532 1.70700 1.33464 1.23509 0.96444 0.96097 0.96837 1.21677 0.99224 0.96078 1.01435 1.23913 0.94162 0.92100 0.91893 1.89559 1.42275 1.52101 1.46897 1.23916 0.84506 0.98105 0.95511 0.88714 0.95207 0.95811 0.88959 0.95313 0.92237 0.92544 0.92981 0.88807 0.90486 0.88870 0.89617 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 9.58 37.16 0.36 -3.07 16 2 C 0.14 3.47 5.18 -4.04 -0.02 3.45 16 3 N -0.44 -10.78 2.64 -114.81 -0.30 -11.08 16 4 C -0.33 -7.82 7.26 -14.93 -0.11 -7.93 16 5 H 0.10 2.20 4.66 -52.48 -0.24 1.95 16 6 C 0.04 0.83 5.32 -17.47 -0.09 0.74 16 7 N -0.86 -21.21 7.80 55.50 0.43 -20.78 16 8 Si 0.92 18.50 29.55 -169.99 -5.02 13.47 16 9 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 10 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 11 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 12 C 0.47 11.24 6.68 -10.99 -0.07 11.17 16 13 O -0.61 -16.05 15.52 5.54 0.09 -15.96 16 14 C -0.13 -2.52 0.72 -154.58 -0.11 -2.63 16 15 C -0.13 -2.35 8.57 37.16 0.32 -2.03 16 16 C 0.06 1.04 7.42 37.61 0.28 1.32 16 17 O -0.39 -7.29 12.38 -35.23 -0.44 -7.73 16 18 C 0.06 1.04 8.07 37.61 0.30 1.35 16 19 H 0.09 2.38 5.79 -51.93 -0.30 2.08 16 20 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 21 H 0.02 0.57 7.91 -51.93 -0.41 0.16 16 22 H 0.09 2.32 6.33 -51.93 -0.33 1.99 16 23 H 0.03 0.70 7.71 -51.93 -0.40 0.30 16 24 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 27 H 0.09 1.82 5.24 -51.93 -0.27 1.55 16 28 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 29 H 0.09 1.57 7.66 -51.93 -0.40 1.17 16 30 H 0.09 1.39 8.10 -51.93 -0.42 0.97 16 31 H 0.09 1.66 7.55 -51.93 -0.39 1.27 16 LS Contribution 249.73 15.07 3.76 3.76 Total: -1.00 -27.18 249.73 -4.62 -31.80 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -3.99 Total: 4.15 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 0.85 Total: 2.35 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.13 Total: -31.85 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.35 Total: -23.69 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.02 Total: 13.47 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -27.18 -4.62 -31.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308221796.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.133 kcal (2) G-P(sol) polarization free energy of solvation -27.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds