Wall clock time and date at job start Sun Mar 29 2020 21:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47405 * 2 1 4 4 C 1.37098 * 119.99711 * 263.14383 * 3 2 1 5 5 H 1.08003 * 119.99412 * 207.33276 * 4 3 2 6 6 C 1.38950 * 120.00141 * 27.05741 * 4 3 2 7 7 N 1.31413 * 119.99958 * 357.57993 * 6 4 3 8 8 Si 1.86796 * 120.00076 * 177.57732 * 6 4 3 9 9 H 1.48505 * 109.47102 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47123 * 119.99859 * 8 6 4 11 11 H 1.48501 * 109.47577 * 240.00396 * 8 6 4 12 12 C 1.34775 * 120.00160 * 83.13864 * 3 2 1 13 13 O 1.21298 * 120.00101 * 355.28099 * 12 3 2 14 14 C 1.50697 * 120.00041 * 175.28426 * 12 3 2 15 15 C 1.53000 * 113.00039 * 58.79832 * 14 12 3 16 16 C 1.54031 * 113.81620 * 286.80858 * 14 12 3 17 17 O 1.44179 * 85.52174 * 223.19462 * 16 14 12 18 18 C 1.44183 * 93.33780 * 24.19566 * 17 16 14 19 19 H 1.08999 * 109.46997 * 59.17528 * 1 2 3 20 20 H 1.09000 * 109.47007 * 179.18211 * 1 2 3 21 21 H 1.09003 * 109.46999 * 299.17759 * 1 2 3 22 22 H 1.08998 * 109.47529 * 239.99686 * 2 1 3 23 23 H 1.09007 * 109.47450 * 119.99975 * 2 1 3 24 24 H 0.97003 * 119.99783 * 179.97438 * 7 6 4 25 25 H 1.09002 * 109.47413 * 52.61762 * 15 14 12 26 26 H 1.08997 * 109.47003 * 172.62097 * 15 14 12 27 27 H 1.09004 * 109.47105 * 292.61812 * 15 14 12 28 28 H 1.08997 * 113.86927 * 337.34604 * 16 14 12 29 29 H 1.09006 * 113.86638 * 109.04918 * 16 14 12 30 30 H 1.09000 * 113.86405 * 221.66339 * 18 17 16 31 31 H 1.08998 * 113.98375 * 89.96302 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3806 1.9802 -1.1788 5 1 3.1184 2.7689 -1.1794 6 6 1.8026 1.5686 -2.3735 7 7 0.9444 0.5734 -2.3797 8 14 2.2455 2.4299 -3.9708 9 1 3.2274 3.5094 -3.6954 10 1 2.8405 1.4490 -4.9136 11 1 1.0212 3.0158 -4.5733 12 6 2.1116 2.0631 1.1588 13 8 1.7115 1.5646 2.1897 14 6 2.7129 3.4448 1.1738 15 6 1.9717 4.4292 0.2669 16 6 4.2426 3.4594 0.9934 17 8 4.2441 4.4433 2.0473 18 6 2.9876 3.9883 2.5887 19 1 -0.3633 0.5266 -0.8825 20 1 -0.3633 -1.0276 -0.0147 21 1 -0.3633 0.5010 0.8973 22 1 1.8934 -0.5139 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 0.5407 0.2863 -3.2137 25 1 0.9091 4.4175 0.5097 26 1 2.3682 5.4330 0.4195 27 1 2.1097 4.1385 -0.7745 28 1 4.7277 2.5218 1.2647 29 1 4.5692 3.8466 0.0282 30 1 2.3187 4.7950 2.8888 31 1 3.0872 3.2122 3.3476 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308221796.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:35 Heat of formation + Delta-G solvation = -51.924643 kcal Electronic energy + Delta-G solvation = -15322.248527 eV Core-core repulsion = 12798.132223 eV Total energy + Delta-G solvation = -2524.116304 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.01418 -39.65517 -36.93212 -33.51448 -33.24224 -31.07173 -27.51467 -27.37674 -26.53877 -24.47165 -21.93043 -20.38462 -18.95755 -18.03853 -16.95770 -16.69732 -16.43138 -16.00975 -15.56164 -15.19524 -14.54523 -14.29940 -13.67567 -13.52764 -13.32059 -12.97077 -12.90574 -12.76752 -12.55259 -12.31713 -12.15102 -11.93281 -11.74600 -11.49555 -10.72680 -10.69050 -10.11867 -9.55169 -8.14817 -5.91897 1.45254 1.53281 1.63437 1.97312 2.33028 2.71853 2.92955 3.15593 3.40754 3.98959 4.23216 4.28170 4.38438 4.59139 4.59957 4.82853 4.90253 4.94502 4.97091 5.01506 5.10184 5.14907 5.17011 5.38658 5.46276 5.55779 5.90762 5.97835 6.54064 7.16263 7.61024 8.01673 8.79821 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.029490 B = 0.014219 C = 0.010549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.230745 B = 1968.739674 C = 2653.697140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.142 3.858 3 N -0.447 5.447 4 C -0.341 4.341 5 H 0.115 0.885 6 C -0.005 4.005 7 N -0.889 5.889 8 Si 0.983 3.017 9 H -0.252 1.252 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.455 3.545 13 O -0.639 6.639 14 C -0.132 4.132 15 C -0.120 4.120 16 C 0.062 3.938 17 O -0.389 6.389 18 C 0.061 3.939 19 H 0.082 0.918 20 H 0.048 0.952 21 H 0.007 0.993 22 H 0.084 0.916 23 H 0.021 0.979 24 H 0.268 0.732 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.068 5.235 -0.506 6.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.019 3.981 3 N -0.164 5.164 4 C -0.468 4.468 5 H 0.132 0.868 6 C -0.206 4.206 7 N -0.527 5.527 8 Si 0.808 3.192 9 H -0.175 1.175 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.244 3.756 13 O -0.529 6.529 14 C -0.136 4.136 15 C -0.177 4.177 16 C -0.015 4.015 17 O -0.308 6.308 18 C -0.016 4.016 19 H 0.100 0.900 20 H 0.067 0.933 21 H 0.027 0.973 22 H 0.102 0.898 23 H 0.039 0.961 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.132 0.868 30 H 0.128 0.872 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.948 5.057 -0.119 5.855 hybrid contribution -0.265 -0.392 -0.730 0.870 sum 2.683 4.665 -0.849 5.448 Atomic orbital electron populations 1.21994 0.96307 1.00247 1.00279 1.21028 0.95039 0.83548 0.98496 1.43957 1.55144 1.11093 1.06175 1.20094 1.23264 1.19804 0.83661 0.86813 1.26160 0.95126 0.96954 1.02401 1.70167 1.28332 1.26488 1.27753 0.84993 0.78198 0.78490 0.77558 1.17518 1.21017 1.20971 1.20678 0.83244 0.88164 0.83503 1.90488 1.55998 1.71902 1.34464 1.23665 0.97397 0.93916 0.98587 1.21621 0.98709 0.96979 1.00356 1.23960 0.92673 0.92147 0.92764 1.89561 1.42319 1.51955 1.46932 1.23945 0.84693 0.98574 0.94370 0.89967 0.93317 0.97338 0.89754 0.96075 0.92198 0.93343 0.90206 0.89656 0.90957 0.86823 0.87167 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.21 9.58 71.98 0.69 -5.52 16 2 C 0.14 7.02 5.18 86.38 0.45 7.47 16 3 N -0.45 -21.93 2.64 -635.52 -1.68 -23.61 16 4 C -0.34 -15.79 7.26 84.04 0.61 -15.18 16 5 H 0.11 4.82 4.66 -2.91 -0.01 4.80 16 6 C 0.00 -0.23 5.32 84.93 0.45 0.22 16 7 N -0.89 -43.26 7.80 21.66 0.17 -43.09 16 8 Si 0.98 36.61 29.55 68.60 2.03 38.63 16 9 H -0.25 -8.67 7.11 99.48 0.71 -7.96 16 10 H -0.28 -10.70 7.11 99.48 0.71 -9.99 16 11 H -0.28 -10.72 7.11 99.48 0.71 -10.01 16 12 C 0.45 21.78 6.68 87.66 0.59 22.36 16 13 O -0.64 -34.24 15.52 -3.08 -0.05 -34.29 16 14 C -0.13 -5.09 0.72 -52.23 -0.04 -5.13 16 15 C -0.12 -4.13 8.57 71.98 0.62 -3.52 16 16 C 0.06 2.12 7.42 72.27 0.54 2.66 16 17 O -0.39 -13.52 12.38 -148.98 -1.84 -15.36 16 18 C 0.06 2.13 8.07 72.28 0.58 2.71 16 19 H 0.08 4.16 5.79 -2.39 -0.01 4.15 16 20 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 21 H 0.01 0.38 7.91 -2.39 -0.02 0.36 16 22 H 0.08 4.28 6.33 -2.39 -0.02 4.27 16 23 H 0.02 1.05 7.71 -2.38 -0.02 1.03 16 24 H 0.27 12.43 8.31 -92.71 -0.77 11.66 16 25 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.08 2.30 8.07 -2.39 -0.02 2.28 16 27 H 0.08 3.09 5.24 -2.39 -0.01 3.08 16 28 H 0.07 2.56 8.09 -2.39 -0.02 2.54 16 29 H 0.11 3.45 7.66 -2.38 -0.02 3.43 16 30 H 0.11 3.29 8.10 -2.39 -0.02 3.27 16 31 H 0.08 2.84 7.55 -2.39 -0.02 2.82 16 Total: -1.00 -56.38 249.73 4.24 -52.14 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 1.13 Total: 19.49 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 4.48 Total: 6.08 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: -1.51 Total: -66.70 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: -1.89 Total: -49.65 kcal Atomic # 14 Polarization: 36.61 SS G_CDS: 2.03 Total: 38.63 kcal Total: -56.38 4.24 -52.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308221796.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.220 kcal (2) G-P(sol) polarization free energy of solvation -56.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds