Wall clock time and date at job start Sun Mar 29 2020 21:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47388 * 2 1 4 4 C 1.37102 * 119.99883 * 274.59472 * 3 2 1 5 5 H 1.08004 * 119.99312 * 184.37924 * 4 3 2 6 6 C 1.38939 * 120.00149 * 4.37510 * 4 3 2 7 7 N 1.31421 * 120.00208 * 13.56302 * 6 4 3 8 8 Si 1.86801 * 120.00269 * 193.55826 * 6 4 3 9 9 H 1.48506 * 109.46851 * 90.00061 * 8 6 4 10 10 H 1.48496 * 109.47493 * 210.00129 * 8 6 4 11 11 H 1.48501 * 109.46817 * 330.00351 * 8 6 4 12 12 C 1.34776 * 119.99827 * 94.59212 * 3 2 1 13 13 O 1.21297 * 119.99765 * 185.08327 * 12 3 2 14 14 C 1.50701 * 120.00084 * 5.07736 * 12 3 2 15 15 O 1.42899 * 112.84935 * 309.84744 * 14 12 3 16 16 C 1.53786 * 113.61017 * 81.04360 * 14 12 3 17 17 C 1.53783 * 87.08027 * 89.19635 * 16 14 12 18 18 C 1.53784 * 87.17163 * 25.38955 * 17 16 14 19 19 H 1.08997 * 109.47239 * 64.15932 * 1 2 3 20 20 H 1.09007 * 109.47591 * 184.16447 * 1 2 3 21 21 H 1.09001 * 109.46858 * 304.16133 * 1 2 3 22 22 H 1.09003 * 109.46607 * 240.00233 * 2 1 3 23 23 H 1.09003 * 109.46984 * 120.00277 * 2 1 3 24 24 H 0.96997 * 119.99813 * 179.97438 * 7 6 4 25 25 H 0.96696 * 114.00085 * 304.93652 * 15 14 12 26 26 H 1.08995 * 113.61417 * 334.65181 * 16 14 12 27 27 H 1.08993 * 113.69001 * 203.75804 * 16 14 12 28 28 H 1.09001 * 113.60894 * 139.97762 * 17 16 14 29 29 H 1.08992 * 113.61653 * 270.79832 * 17 16 14 30 30 H 1.09004 * 113.61406 * 89.15827 * 18 17 16 31 31 H 1.09004 * 113.61155 * 220.05611 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1572 2.0591 -1.1835 5 1 2.5835 3.0515 -1.1905 6 6 1.7496 1.4696 -2.3738 7 7 0.9966 0.3928 -2.3497 8 14 2.2718 2.2077 -4.0085 9 1 3.5577 1.6010 -4.4372 10 1 1.2301 1.9338 -5.0307 11 1 2.4429 3.6750 -3.8569 12 6 2.3311 1.9853 1.1635 13 8 2.6470 3.1564 1.1730 14 6 2.2882 1.2059 2.4526 15 8 1.0637 0.4906 2.6281 16 6 3.5422 0.3498 2.6967 17 6 4.1472 1.5769 3.3990 18 6 2.7054 2.0290 3.6849 19 1 -0.3633 0.4479 -0.9249 20 1 -0.3634 -1.0250 0.0746 21 1 -0.3633 0.5771 0.8504 22 1 1.8932 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8900 24 1 0.7118 -0.0185 -3.1807 25 1 0.2730 1.0443 2.5701 26 1 4.0640 0.0690 1.7819 27 1 3.3724 -0.4954 3.3636 28 1 4.7138 1.3307 4.2970 29 1 4.6882 2.2424 2.7263 30 1 2.3050 1.6442 4.6229 31 1 2.5527 3.1018 3.5668 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308248078.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:32 Heat of formation + Delta-G solvation = -42.262253 kcal Electronic energy + Delta-G solvation = -15344.340463 eV Core-core repulsion = 12820.643152 eV Total energy + Delta-G solvation = -2523.697311 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.85957 -36.91431 -35.23951 -34.13910 -31.58231 -29.28850 -26.04273 -25.22381 -23.93374 -22.08974 -20.60878 -18.22927 -17.36955 -16.65076 -15.23788 -15.05245 -14.71382 -14.09017 -13.58994 -13.31576 -12.89495 -12.55953 -12.09625 -11.74692 -11.39799 -11.14510 -11.05665 -11.02203 -10.68119 -10.52121 -10.34422 -10.22069 -9.96271 -9.78510 -9.45969 -8.79187 -8.19362 -7.72187 -6.23174 -3.82047 3.12867 3.23578 3.28726 3.76232 4.07997 4.59306 4.76708 5.02027 5.09166 5.20187 5.41109 5.62912 5.89090 6.04718 6.09209 6.27324 6.47963 6.52807 6.60556 6.74476 6.81916 6.94002 7.04502 7.41890 7.58944 7.92665 7.98102 8.15339 8.54677 9.17126 9.45176 9.98134 10.64271 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042372 B = 0.011307 C = 0.009844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.655053 B = 2475.679409 C = 2843.730949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.123 3.877 3 N -0.427 5.427 4 C -0.299 4.299 5 H 0.103 0.897 6 C 0.024 3.976 7 N -0.869 5.869 8 Si 0.929 3.071 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.270 1.270 12 C 0.425 3.575 13 O -0.593 6.593 14 C 0.101 3.899 15 O -0.545 6.545 16 C -0.118 4.118 17 C -0.135 4.135 18 C -0.150 4.150 19 H 0.093 0.907 20 H 0.030 0.970 21 H 0.017 0.983 22 H 0.099 0.901 23 H 0.045 0.955 24 H 0.265 0.735 25 H 0.374 0.626 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.113 -2.599 6.120 6.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.000 4.000 3 N -0.144 5.144 4 C -0.427 4.427 5 H 0.121 0.879 6 C -0.178 4.178 7 N -0.510 5.510 8 Si 0.756 3.244 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.195 1.195 12 C 0.212 3.788 13 O -0.480 6.480 14 C 0.057 3.943 15 O -0.351 6.351 16 C -0.156 4.156 17 C -0.173 4.173 18 C -0.188 4.188 19 H 0.111 0.889 20 H 0.049 0.951 21 H 0.036 0.964 22 H 0.117 0.883 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.222 0.778 26 H 0.091 0.909 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.574 -2.674 6.001 6.756 hybrid contribution -0.324 0.573 -0.898 1.113 sum 1.250 -2.102 5.104 5.659 Atomic orbital electron populations 1.22223 0.96536 0.98819 1.01762 1.21639 0.94970 0.82627 1.00745 1.43903 1.53539 1.12196 1.04739 1.19869 1.38252 1.01844 0.82771 0.87897 1.25292 0.95884 0.96824 0.99761 1.70192 1.32533 1.21123 1.27137 0.85878 0.78247 0.79430 0.80879 1.20387 1.20939 1.19508 1.19886 0.86735 0.87586 0.84590 1.90501 1.55021 1.16269 1.86169 1.22699 0.85369 0.92860 0.93387 1.86533 1.15232 1.38554 1.94801 1.23015 0.94168 0.97284 1.01093 1.22625 0.96416 0.97807 1.00420 1.23424 0.96504 1.01623 0.97263 0.88851 0.95107 0.96367 0.88291 0.93690 0.92403 0.77793 0.90886 0.89377 0.91439 0.89539 0.89903 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.18 37.16 0.34 -2.65 16 2 C 0.12 2.88 4.90 -4.05 -0.02 2.86 16 3 N -0.43 -11.01 2.63 -114.81 -0.30 -11.32 16 4 C -0.30 -8.30 9.51 -14.94 -0.14 -8.44 16 5 H 0.10 3.01 7.22 -52.48 -0.38 2.63 16 6 C 0.02 0.62 5.25 -17.47 -0.09 0.53 16 7 N -0.87 -22.09 7.36 55.50 0.41 -21.69 16 8 Si 0.93 20.52 29.57 -169.99 -5.03 15.49 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 12 C 0.43 10.52 6.69 -10.99 -0.07 10.44 16 13 O -0.59 -16.47 15.43 5.54 0.09 -16.39 16 14 C 0.10 1.99 0.99 -90.87 -0.09 1.90 16 15 O -0.54 -10.08 10.26 -35.23 -0.36 -10.44 16 16 C -0.12 -2.05 6.79 -25.92 -0.18 -2.22 16 17 C -0.14 -2.21 7.75 -25.92 -0.20 -2.41 16 18 C -0.15 -2.59 7.30 -25.83 -0.19 -2.78 16 19 H 0.09 2.31 5.81 -51.93 -0.30 2.01 16 20 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.02 0.37 5.95 -51.93 -0.31 0.06 16 22 H 0.10 2.50 5.92 -51.93 -0.31 2.19 16 23 H 0.04 0.99 5.30 -51.93 -0.27 0.71 16 24 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 25 H 0.37 6.24 7.75 45.56 0.35 6.60 16 26 H 0.07 1.34 8.09 -51.93 -0.42 0.92 16 27 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.08 1.50 7.42 -51.93 -0.39 1.12 16 LS Contribution 247.41 15.07 3.73 3.73 Total: -1.00 -29.23 247.41 -5.38 -34.61 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -3.27 Total: 8.77 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -0.64 Total: -2.77 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.11 Total: -33.00 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.28 Total: -26.82 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.23 -5.38 -34.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308248078.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.653 kcal (2) G-P(sol) polarization free energy of solvation -29.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds