Wall clock time and date at job start Sun Mar 29 2020 21:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47388 * 2 1 4 4 C 1.37102 * 119.99883 * 274.59472 * 3 2 1 5 5 H 1.08004 * 119.99312 * 184.37924 * 4 3 2 6 6 C 1.38939 * 120.00149 * 4.37510 * 4 3 2 7 7 N 1.31421 * 120.00208 * 13.56302 * 6 4 3 8 8 Si 1.86801 * 120.00269 * 193.55826 * 6 4 3 9 9 H 1.48506 * 109.46851 * 90.00061 * 8 6 4 10 10 H 1.48496 * 109.47493 * 210.00129 * 8 6 4 11 11 H 1.48501 * 109.46817 * 330.00351 * 8 6 4 12 12 C 1.34776 * 119.99827 * 94.59212 * 3 2 1 13 13 O 1.21297 * 119.99765 * 185.08327 * 12 3 2 14 14 C 1.50701 * 120.00084 * 5.07736 * 12 3 2 15 15 O 1.42899 * 112.84935 * 309.84744 * 14 12 3 16 16 C 1.53786 * 113.61017 * 81.04360 * 14 12 3 17 17 C 1.53783 * 87.08027 * 89.19635 * 16 14 12 18 18 C 1.53784 * 87.17163 * 25.38955 * 17 16 14 19 19 H 1.08997 * 109.47239 * 64.15932 * 1 2 3 20 20 H 1.09007 * 109.47591 * 184.16447 * 1 2 3 21 21 H 1.09001 * 109.46858 * 304.16133 * 1 2 3 22 22 H 1.09003 * 109.46607 * 240.00233 * 2 1 3 23 23 H 1.09003 * 109.46984 * 120.00277 * 2 1 3 24 24 H 0.96997 * 119.99813 * 179.97438 * 7 6 4 25 25 H 0.96696 * 114.00085 * 304.93652 * 15 14 12 26 26 H 1.08995 * 113.61417 * 334.65181 * 16 14 12 27 27 H 1.08993 * 113.69001 * 203.75804 * 16 14 12 28 28 H 1.09001 * 113.60894 * 139.97762 * 17 16 14 29 29 H 1.08992 * 113.61653 * 270.79832 * 17 16 14 30 30 H 1.09004 * 113.61406 * 89.15827 * 18 17 16 31 31 H 1.09004 * 113.61155 * 220.05611 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1572 2.0591 -1.1835 5 1 2.5835 3.0515 -1.1905 6 6 1.7496 1.4696 -2.3738 7 7 0.9966 0.3928 -2.3497 8 14 2.2718 2.2077 -4.0085 9 1 3.5577 1.6010 -4.4372 10 1 1.2301 1.9338 -5.0307 11 1 2.4429 3.6750 -3.8569 12 6 2.3311 1.9853 1.1635 13 8 2.6470 3.1564 1.1730 14 6 2.2882 1.2059 2.4526 15 8 1.0637 0.4906 2.6281 16 6 3.5422 0.3498 2.6967 17 6 4.1472 1.5769 3.3990 18 6 2.7054 2.0290 3.6849 19 1 -0.3633 0.4479 -0.9249 20 1 -0.3634 -1.0250 0.0746 21 1 -0.3633 0.5771 0.8504 22 1 1.8932 -0.5138 -0.8901 23 1 1.8933 -0.5139 0.8900 24 1 0.7118 -0.0185 -3.1807 25 1 0.2730 1.0443 2.5701 26 1 4.0640 0.0690 1.7819 27 1 3.3724 -0.4954 3.3636 28 1 4.7138 1.3307 4.2970 29 1 4.6882 2.2424 2.7263 30 1 2.3050 1.6442 4.6229 31 1 2.5527 3.1018 3.5668 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308248078.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:32 Heat of formation + Delta-G solvation = -62.286565 kcal Electronic energy + Delta-G solvation = -15345.208782 eV Core-core repulsion = 12820.643152 eV Total energy + Delta-G solvation = -2524.565630 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.52625 -38.65191 -37.14334 -35.67196 -33.58727 -31.17315 -27.85849 -26.61985 -25.63150 -23.93788 -22.28146 -19.80969 -19.08139 -18.61764 -17.09235 -16.68298 -16.28614 -15.91151 -15.32078 -15.04196 -14.68957 -14.37653 -13.72430 -13.27761 -13.12128 -12.91650 -12.80743 -12.56451 -12.47502 -12.13555 -12.01007 -11.86328 -11.68354 -11.60306 -10.95911 -10.74781 -10.07570 -9.70139 -8.21553 -5.89825 1.33931 1.40879 1.52105 1.89922 2.24444 2.94219 3.06284 3.22931 3.63497 3.81188 3.84194 3.99994 4.43127 4.71648 4.76782 4.79818 4.96463 4.99056 5.08081 5.10321 5.19184 5.25350 5.38096 5.46626 5.61332 6.03392 6.06039 6.47373 6.69822 7.16503 7.49203 8.02183 8.63122 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042372 B = 0.011307 C = 0.009844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.655053 B = 2475.679409 C = 2843.730949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.130 3.870 3 N -0.438 5.438 4 C -0.346 4.346 5 H 0.073 0.927 6 C -0.001 4.001 7 N -0.869 5.869 8 Si 0.989 3.011 9 H -0.270 1.270 10 H -0.269 1.269 11 H -0.279 1.279 12 C 0.412 3.588 13 O -0.636 6.636 14 C 0.094 3.906 15 O -0.540 6.540 16 C -0.111 4.111 17 C -0.129 4.129 18 C -0.140 4.140 19 H 0.066 0.934 20 H 0.052 0.948 21 H 0.028 0.972 22 H 0.079 0.921 23 H 0.063 0.937 24 H 0.272 0.728 25 H 0.381 0.619 26 H 0.056 0.944 27 H 0.119 0.881 28 H 0.108 0.892 29 H 0.058 0.942 30 H 0.118 0.882 31 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.997 -3.992 6.934 8.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.008 3.992 3 N -0.154 5.154 4 C -0.474 4.474 5 H 0.091 0.909 6 C -0.203 4.203 7 N -0.508 5.508 8 Si 0.813 3.187 9 H -0.195 1.195 10 H -0.194 1.194 11 H -0.205 1.205 12 C 0.201 3.799 13 O -0.525 6.525 14 C 0.050 3.950 15 O -0.347 6.347 16 C -0.149 4.149 17 C -0.166 4.166 18 C -0.178 4.178 19 H 0.084 0.916 20 H 0.071 0.929 21 H 0.047 0.953 22 H 0.097 0.903 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.230 0.770 26 H 0.075 0.925 27 H 0.138 0.862 28 H 0.126 0.874 29 H 0.077 0.923 30 H 0.136 0.864 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.434 -4.107 6.819 8.088 hybrid contribution -0.333 0.993 -1.171 1.571 sum 1.101 -3.114 5.648 6.543 Atomic orbital electron populations 1.22064 0.95494 1.00069 1.00769 1.21600 0.95713 0.81415 1.00501 1.44124 1.53698 1.12905 1.04722 1.19750 1.41110 1.01769 0.84723 0.90928 1.25964 0.95137 0.97189 1.02026 1.70288 1.31336 1.20980 1.28241 0.84996 0.78398 0.78107 0.77172 1.19543 1.19404 1.20459 1.20879 0.85395 0.87580 0.86051 1.90457 1.56532 1.18360 1.87154 1.22655 0.86817 0.93940 0.91567 1.86512 1.15198 1.38521 1.94488 1.23079 0.92338 0.98306 1.01160 1.22579 0.96155 0.96538 1.01319 1.23454 0.97010 1.00016 0.97340 0.91556 0.92902 0.95289 0.90311 0.91935 0.91737 0.76991 0.92509 0.86241 0.87391 0.92310 0.86418 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.43 9.18 71.98 0.66 -4.77 16 2 C 0.13 6.03 4.90 86.38 0.42 6.45 16 3 N -0.44 -23.04 2.63 -635.54 -1.67 -24.71 16 4 C -0.35 -19.82 9.51 84.04 0.80 -19.02 16 5 H 0.07 4.50 7.22 -2.91 -0.02 4.48 16 6 C 0.00 -0.07 5.25 84.92 0.45 0.38 16 7 N -0.87 -43.94 7.36 21.66 0.16 -43.78 16 8 Si 0.99 42.22 29.57 68.60 2.03 44.25 16 9 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 10 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 C 0.41 20.78 6.69 87.66 0.59 21.37 16 13 O -0.64 -36.75 15.43 -3.08 -0.05 -36.80 16 14 C 0.09 3.59 0.99 -10.95 -0.01 3.58 16 15 O -0.54 -18.67 10.26 -148.98 -1.53 -20.20 16 16 C -0.11 -3.60 6.79 31.12 0.21 -3.39 16 17 C -0.13 -3.92 7.75 31.12 0.24 -3.68 16 18 C -0.14 -4.55 7.30 31.18 0.23 -4.32 16 19 H 0.07 3.25 5.81 -2.39 -0.01 3.24 16 20 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 21 H 0.03 1.15 5.95 -2.39 -0.01 1.14 16 22 H 0.08 3.97 5.92 -2.39 -0.01 3.95 16 23 H 0.06 2.65 5.30 -2.39 -0.01 2.64 16 24 H 0.27 12.86 8.31 -92.71 -0.77 12.09 16 25 H 0.38 11.98 7.75 -74.06 -0.57 11.40 16 26 H 0.06 2.02 8.09 -2.39 -0.02 2.00 16 27 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 28 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 31 H 0.06 2.14 7.42 -2.39 -0.02 2.12 16 Total: -1.00 -64.19 247.41 3.09 -61.10 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 0.57 Total: 23.53 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 3.58 Total: -3.39 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: -1.51 Total: -68.49 kcal Atomic # 8 Polarization: -55.42 SS G_CDS: -1.58 Total: -56.99 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -64.19 3.09 -61.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308248078.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.187 kcal (2) G-P(sol) polarization free energy of solvation -64.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds