Wall clock time and date at job start Sun Mar 29 2020 22:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 114.00089 * 2 1 4 4 H 1.08999 * 109.46801 * 8.79124 * 3 2 1 5 5 C 1.50687 * 109.47175 * 128.79863 * 3 2 1 6 6 O 1.21277 * 120.00501 * 4.99871 * 5 3 2 7 7 N 1.34780 * 120.00099 * 185.00055 * 5 3 2 8 8 C 1.46503 * 120.00393 * 179.97438 * 7 5 3 9 9 C 1.50701 * 109.47283 * 179.97438 * 8 7 5 10 10 H 1.07995 * 119.99910 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99856 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00195 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 119.99936 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47146 * 60.00337 * 13 11 9 15 15 H 1.48495 * 109.47495 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47192 * 300.00388 * 13 11 9 17 17 C 1.53004 * 109.46857 * 248.79812 * 3 2 1 18 18 C 1.52997 * 117.51839 * 352.31596 * 17 3 2 19 19 C 1.52998 * 117.49887 * 60.94586 * 17 3 2 20 20 H 1.08995 * 109.47066 * 293.32424 * 1 2 3 21 21 H 1.09009 * 109.46702 * 53.31897 * 1 2 3 22 22 H 1.08997 * 109.47357 * 173.31698 * 1 2 3 23 23 H 0.97001 * 119.99812 * 359.97438 * 7 5 3 24 24 H 1.09000 * 109.47152 * 300.00008 * 8 7 5 25 25 H 1.09002 * 109.46808 * 59.99865 * 8 7 5 26 26 H 0.96998 * 119.99979 * 180.02562 * 12 11 9 27 27 H 1.08999 * 115.54708 * 206.61484 * 17 3 2 28 28 H 1.09001 * 117.49763 * 214.96856 * 18 17 3 29 29 H 1.08998 * 117.50255 * 359.97438 * 18 17 3 30 30 H 1.08997 * 117.50020 * 359.97438 * 19 17 3 31 31 H 1.09008 * 117.49760 * 144.99796 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2302 2.0505 0.1571 5 6 3.0278 1.4023 1.1072 6 8 3.3009 0.4222 1.7673 7 7 3.6345 2.5781 1.3641 8 6 4.6233 2.6724 2.4409 9 6 5.1476 4.0831 2.5194 10 1 4.7806 4.8344 1.8358 11 6 6.0950 4.4148 3.4645 12 7 6.5416 3.5001 4.2973 13 14 6.7454 6.1632 3.5614 14 1 5.6222 7.0947 3.8371 15 1 7.7477 6.2589 4.6529 16 1 7.3839 6.5261 2.2706 17 6 2.6943 1.5592 -1.3449 18 6 2.7972 0.3834 -2.3185 19 6 1.8195 1.5262 -2.5997 20 1 -0.3633 0.4069 0.9436 21 1 -0.3633 0.6139 -0.8242 22 1 -0.3634 -1.0206 -0.1196 23 1 3.4163 3.3620 0.8359 24 1 4.1554 2.4051 3.3883 25 1 5.4481 1.9894 2.2375 26 1 7.2079 3.7336 4.9624 27 1 3.5200 2.2704 -1.3256 28 1 3.6907 0.3212 -2.9398 29 1 2.3780 -0.5713 -2.0009 30 1 0.7568 1.3234 -2.4672 31 1 2.0698 2.2158 -3.4060 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308252601.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:45 Heat of formation + Delta-G solvation = -62.771851 kcal Electronic energy + Delta-G solvation = -14190.621695 eV Core-core repulsion = 11666.035021 eV Total energy + Delta-G solvation = -2524.586674 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.61726 -37.55464 -35.84045 -34.11541 -32.32515 -29.22645 -27.05068 -25.75391 -22.63743 -22.29832 -21.03115 -19.58806 -17.59181 -16.49956 -16.22713 -15.75562 -14.90264 -14.72294 -14.33161 -13.95753 -13.67788 -13.17834 -12.60816 -12.05182 -11.93871 -11.57483 -11.42489 -11.29777 -10.99560 -10.86086 -10.50049 -10.30165 -10.14988 -9.85671 -9.40749 -8.72691 -8.71794 -7.87094 -6.15912 -4.23197 3.23657 3.25505 3.30318 3.31809 3.52282 3.94692 4.26223 4.41515 4.74196 4.95246 4.97710 5.18013 5.19973 5.30683 5.33476 5.58050 5.60460 5.64709 5.69429 5.94722 6.11010 6.29965 7.09960 7.33485 7.45246 7.52988 7.68013 7.97562 8.62709 8.79086 9.11380 9.43389 10.94287 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046742 B = 0.006587 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.886574 B = 4249.494375 C = 4552.173040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.354 6.354 3 C 0.101 3.899 4 H 0.087 0.913 5 C 0.495 3.505 6 O -0.536 6.536 7 N -0.711 5.711 8 C 0.251 3.749 9 C -0.544 4.544 10 H 0.063 0.937 11 C 0.064 3.936 12 N -0.885 5.885 13 Si 0.904 3.096 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.275 1.275 17 C -0.171 4.171 18 C -0.159 4.159 19 C -0.178 4.178 20 H 0.042 0.958 21 H 0.040 0.960 22 H 0.086 0.914 23 H 0.390 0.610 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.267 0.733 27 H 0.119 0.881 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.614 -1.470 -11.943 16.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.272 6.272 3 C 0.039 3.961 4 H 0.105 0.895 5 C 0.278 3.722 6 O -0.413 6.413 7 N -0.361 5.361 8 C 0.130 3.870 9 C -0.583 4.583 10 H 0.081 0.919 11 C -0.140 4.140 12 N -0.523 5.523 13 Si 0.732 3.268 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.201 1.201 17 C -0.189 4.189 18 C -0.196 4.196 19 C -0.215 4.215 20 H 0.061 0.939 21 H 0.059 0.941 22 H 0.105 0.895 23 H 0.222 0.778 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.076 0.924 27 H 0.137 0.863 28 H 0.111 0.889 29 H 0.124 0.876 30 H 0.109 0.891 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.155 -2.392 -11.273 15.360 hybrid contribution 0.121 1.593 -0.092 1.600 sum -10.034 -0.799 -11.365 15.181 Atomic orbital electron populations 1.22917 0.81414 1.02713 0.99933 1.88023 1.19035 1.25571 1.94528 1.21489 0.95378 0.86328 0.92860 0.89543 1.20393 0.82803 0.84233 0.84734 1.90669 1.63766 1.36482 1.50410 1.46432 1.42664 1.09894 1.37116 1.19110 0.86132 0.97153 0.84585 1.21187 1.24212 0.94681 1.18174 0.91919 1.24954 0.96018 0.97911 0.95124 1.69967 1.29719 1.33474 1.19109 0.86466 0.78689 0.83875 0.77818 1.20073 1.21055 1.20062 1.22660 1.02832 1.03839 0.89595 1.22876 1.01039 0.94459 1.01233 1.22970 0.97042 1.02681 0.98778 0.93887 0.94108 0.89510 0.77751 0.95536 0.95468 0.92366 0.86278 0.88935 0.87565 0.89118 0.88677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.73 101.05 1.08 1.39 16 2 O -0.35 -5.70 8.24 -55.09 -0.45 -6.16 16 3 C 0.10 1.59 2.98 -27.89 -0.08 1.51 16 4 H 0.09 1.14 7.62 -51.93 -0.40 0.74 16 5 C 0.50 10.49 7.16 -10.99 -0.08 10.41 16 6 O -0.54 -13.96 16.51 -14.30 -0.24 -14.19 16 7 N -0.71 -15.27 5.43 -61.47 -0.33 -15.60 16 8 C 0.25 6.75 5.43 -5.19 -0.03 6.72 16 9 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 10 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 12 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 13 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 14 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 C -0.17 -2.32 5.68 -90.62 -0.51 -2.83 16 18 C -0.16 -1.99 9.87 -26.73 -0.26 -2.26 16 19 C -0.18 -1.88 10.20 -26.73 -0.27 -2.15 16 20 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 21 H 0.04 0.37 7.04 -51.92 -0.37 0.01 16 22 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.39 7.08 8.32 -40.82 -0.34 6.74 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.12 1.64 8.02 -51.93 -0.42 1.22 16 28 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.11 1.42 7.06 -51.93 -0.37 1.06 16 30 H 0.09 0.87 7.05 -51.93 -0.37 0.51 16 31 H 0.09 0.87 8.14 -51.92 -0.42 0.44 16 LS Contribution 270.98 15.07 4.08 4.08 Total: -1.00 -33.04 270.98 -6.12 -39.16 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -4.32 Total: 3.10 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -0.57 Total: -0.68 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.40 Total: -41.15 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.69 Total: -20.35 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -33.04 -6.12 -39.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308252601.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.615 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds