Wall clock time and date at job start Sun Mar 29 2020 22:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 114.00089 * 2 1 4 4 H 1.08999 * 109.46801 * 8.79124 * 3 2 1 5 5 C 1.50687 * 109.47175 * 128.79863 * 3 2 1 6 6 O 1.21277 * 120.00501 * 4.99871 * 5 3 2 7 7 N 1.34780 * 120.00099 * 185.00055 * 5 3 2 8 8 C 1.46503 * 120.00393 * 179.97438 * 7 5 3 9 9 C 1.50701 * 109.47283 * 179.97438 * 8 7 5 10 10 H 1.07995 * 119.99910 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99856 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00195 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 119.99936 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47146 * 60.00337 * 13 11 9 15 15 H 1.48495 * 109.47495 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47192 * 300.00388 * 13 11 9 17 17 C 1.53004 * 109.46857 * 248.79812 * 3 2 1 18 18 C 1.52997 * 117.51839 * 352.31596 * 17 3 2 19 19 C 1.52998 * 117.49887 * 60.94586 * 17 3 2 20 20 H 1.08995 * 109.47066 * 293.32424 * 1 2 3 21 21 H 1.09009 * 109.46702 * 53.31897 * 1 2 3 22 22 H 1.08997 * 109.47357 * 173.31698 * 1 2 3 23 23 H 0.97001 * 119.99812 * 359.97438 * 7 5 3 24 24 H 1.09000 * 109.47152 * 300.00008 * 8 7 5 25 25 H 1.09002 * 109.46808 * 59.99865 * 8 7 5 26 26 H 0.96998 * 119.99979 * 180.02562 * 12 11 9 27 27 H 1.08999 * 115.54708 * 206.61484 * 17 3 2 28 28 H 1.09001 * 117.49763 * 214.96856 * 18 17 3 29 29 H 1.08998 * 117.50255 * 359.97438 * 18 17 3 30 30 H 1.08997 * 117.50020 * 359.97438 * 19 17 3 31 31 H 1.09008 * 117.49760 * 144.99796 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2302 2.0505 0.1571 5 6 3.0278 1.4023 1.1072 6 8 3.3009 0.4222 1.7673 7 7 3.6345 2.5781 1.3641 8 6 4.6233 2.6724 2.4409 9 6 5.1476 4.0831 2.5194 10 1 4.7806 4.8344 1.8358 11 6 6.0950 4.4148 3.4645 12 7 6.5416 3.5001 4.2973 13 14 6.7454 6.1632 3.5614 14 1 5.6222 7.0947 3.8371 15 1 7.7477 6.2589 4.6529 16 1 7.3839 6.5261 2.2706 17 6 2.6943 1.5592 -1.3449 18 6 2.7972 0.3834 -2.3185 19 6 1.8195 1.5262 -2.5997 20 1 -0.3633 0.4069 0.9436 21 1 -0.3633 0.6139 -0.8242 22 1 -0.3634 -1.0206 -0.1196 23 1 3.4163 3.3620 0.8359 24 1 4.1554 2.4051 3.3883 25 1 5.4481 1.9894 2.2375 26 1 7.2079 3.7336 4.9624 27 1 3.5200 2.2704 -1.3256 28 1 3.6907 0.3212 -2.9398 29 1 2.3780 -0.5713 -2.0009 30 1 0.7568 1.3234 -2.4672 31 1 2.0698 2.2158 -3.4060 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308252601.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:45 Heat of formation + Delta-G solvation = -86.479800 kcal Electronic energy + Delta-G solvation = -14191.649749 eV Core-core repulsion = 11666.035021 eV Total energy + Delta-G solvation = -2525.614728 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.07064 -39.02338 -36.88731 -36.10392 -34.37350 -30.73453 -28.73626 -26.95084 -24.62292 -23.18789 -22.37673 -21.16330 -19.27275 -17.88621 -17.75037 -17.24047 -16.65714 -16.21606 -15.84801 -15.32943 -15.16720 -14.38712 -14.15910 -13.97055 -13.78032 -12.97080 -12.77668 -12.65281 -12.34043 -12.30828 -12.24375 -11.59554 -11.52034 -11.25371 -10.92114 -10.80251 -10.26528 -9.87943 -8.29527 -6.47046 1.43274 1.47789 1.56040 1.63639 2.10481 2.40265 2.91435 3.05131 3.06278 3.66488 3.81273 3.91420 4.20570 4.24030 4.40641 4.52345 4.61601 4.79594 4.87624 5.01954 5.08574 5.20815 5.23218 5.35373 5.45395 5.64358 5.82433 6.09243 6.63145 6.87040 7.21955 7.43962 8.82700 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046742 B = 0.006587 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.886574 B = 4249.494375 C = 4552.173040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.383 6.383 3 C 0.116 3.884 4 H 0.119 0.881 5 C 0.488 3.512 6 O -0.594 6.594 7 N -0.701 5.701 8 C 0.267 3.733 9 C -0.557 4.557 10 H 0.087 0.913 11 C 0.003 3.997 12 N -0.932 5.932 13 Si 0.987 3.013 14 H -0.261 1.261 15 H -0.286 1.286 16 H -0.261 1.261 17 C -0.194 4.194 18 C -0.173 4.173 19 C -0.139 4.139 20 H 0.041 0.959 21 H 0.071 0.929 22 H 0.101 0.899 23 H 0.410 0.590 24 H -0.013 1.013 25 H -0.014 1.014 26 H 0.269 0.731 27 H 0.115 0.885 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.958 0.644 -14.084 18.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.301 6.301 3 C 0.055 3.945 4 H 0.137 0.863 5 C 0.274 3.726 6 O -0.475 6.475 7 N -0.352 5.352 8 C 0.144 3.856 9 C -0.595 4.595 10 H 0.105 0.895 11 C -0.197 4.197 12 N -0.571 5.571 13 Si 0.810 3.190 14 H -0.185 1.185 15 H -0.211 1.211 16 H -0.186 1.186 17 C -0.212 4.212 18 C -0.210 4.210 19 C -0.176 4.176 20 H 0.059 0.941 21 H 0.089 0.911 22 H 0.120 0.880 23 H 0.246 0.754 24 H 0.005 0.995 25 H 0.004 0.996 26 H 0.078 0.922 27 H 0.133 0.867 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.125 0.875 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.544 -0.256 -13.465 17.738 hybrid contribution 0.491 0.826 0.578 1.121 sum -11.053 0.570 -12.887 16.988 Atomic orbital electron populations 1.23195 0.78934 1.04502 1.01110 1.88000 1.21803 1.25800 1.94531 1.21360 0.94444 0.87372 0.91355 0.86342 1.21607 0.82931 0.82822 0.85198 1.90632 1.65792 1.38304 1.52756 1.46143 1.41704 1.11299 1.36071 1.18561 0.85754 0.96751 0.84552 1.21588 1.24354 0.94817 1.18731 0.89536 1.26108 0.96109 1.03069 0.94384 1.70143 1.30518 1.36379 1.20049 0.85170 0.78160 0.77466 0.78194 1.18498 1.21136 1.18559 1.22604 1.04313 1.04864 0.89453 1.22932 1.02451 0.94294 1.01303 1.23085 0.97223 1.00729 0.96532 0.94054 0.91053 0.88018 0.75436 0.99524 0.99633 0.92206 0.86734 0.88312 0.88755 0.87461 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.73 113.37 1.22 1.59 16 2 O -0.38 -11.92 8.24 -129.99 -1.07 -12.99 16 3 C 0.12 3.49 2.98 29.85 0.09 3.58 16 4 H 0.12 2.76 7.62 -2.39 -0.02 2.74 16 5 C 0.49 21.13 7.16 87.65 0.63 21.76 16 6 O -0.59 -32.49 16.51 15.97 0.26 -32.23 16 7 N -0.70 -30.63 5.43 -466.79 -2.54 -33.17 16 8 C 0.27 15.03 5.43 85.63 0.46 15.49 16 9 C -0.56 -30.55 9.28 25.60 0.24 -30.31 16 10 H 0.09 4.22 7.60 -2.91 -0.02 4.20 16 11 C 0.00 0.16 5.46 84.65 0.46 0.62 16 12 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 13 Si 0.99 42.27 29.54 68.60 2.03 44.30 16 14 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 15 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 16 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 17 C -0.19 -4.86 5.68 -10.79 -0.06 -4.92 16 18 C -0.17 -4.01 9.87 30.59 0.30 -3.70 16 19 C -0.14 -2.38 10.20 30.59 0.31 -2.07 16 20 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 21 H 0.07 1.01 7.04 -2.38 -0.02 0.99 16 22 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.41 14.50 8.32 -92.71 -0.77 13.73 16 24 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 25 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 26 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 27 H 0.11 2.96 8.02 -2.39 -0.02 2.94 16 28 H 0.10 2.11 8.14 -2.39 -0.02 2.10 16 29 H 0.09 2.42 7.06 -2.39 -0.02 2.41 16 30 H 0.11 1.51 7.05 -2.39 -0.02 1.49 16 31 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -75.32 270.98 2.97 -72.35 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.35 Total: 16.37 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 3.65 Total: 2.04 kcal Atomic # 7 Polarization: -87.58 SS G_CDS: -2.25 Total: -89.83 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -0.81 Total: -45.22 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -75.32 2.97 -72.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308252601.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.134 kcal (2) G-P(sol) polarization free energy of solvation -75.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds