Wall clock time and date at job start Sun Mar 29 2020 22:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.08994 * 109.46677 * 29.99907 * 3 2 1 5 5 C 1.50699 * 109.46791 * 270.00175 * 3 2 1 6 6 O 1.21286 * 120.00562 * 354.99886 * 5 3 2 7 7 N 1.34778 * 119.99435 * 174.99856 * 5 3 2 8 8 C 1.46506 * 119.99742 * 180.02562 * 7 5 3 9 9 C 1.50700 * 109.47120 * 180.02562 * 8 7 5 10 10 H 1.08005 * 119.99828 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00105 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99962 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00089 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47004 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47146 * 119.99898 * 13 11 9 16 16 H 1.48502 * 109.47241 * 239.99823 * 13 11 9 17 17 C 1.53000 * 109.47081 * 150.00312 * 3 2 1 18 18 C 1.52995 * 117.49786 * 8.74514 * 17 3 2 19 19 C 1.53003 * 117.49702 * 300.08418 * 17 3 2 20 20 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 22 22 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 23 23 H 0.97002 * 120.00568 * 359.97438 * 7 5 3 24 24 H 1.09003 * 109.47119 * 299.99949 * 8 7 5 25 25 H 1.09001 * 109.47417 * 60.00200 * 8 7 5 26 26 H 0.96996 * 119.99938 * 179.97438 * 12 11 9 27 27 H 1.08997 * 115.54649 * 154.41935 * 17 3 2 28 28 H 1.08996 * 117.50336 * 359.97438 * 18 17 3 29 29 H 1.09004 * 117.49912 * 145.02465 * 18 17 3 30 30 H 1.08993 * 117.49864 * 214.98271 * 19 17 3 31 31 H 1.09003 * 117.49982 * 359.97438 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2146 1.7643 -1.4208 6 8 1.9791 1.0105 -2.3414 7 7 2.6589 3.0124 -1.6685 8 6 2.8570 3.4587 -3.0498 9 6 3.3555 4.8808 -3.0516 10 1 3.5090 5.4004 -2.1173 11 6 3.6156 5.5187 -4.2459 12 7 3.4292 4.8858 -5.3836 13 14 4.2329 7.2818 -4.2482 14 1 4.3591 7.7638 -2.8493 15 1 5.5593 7.3410 -4.9132 16 1 3.2715 8.1419 -4.9838 17 6 3.3590 1.2631 0.7212 18 6 3.9153 -0.1111 1.0990 19 6 3.3639 0.8166 2.1846 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 2.8469 3.6154 -0.9324 24 1 3.5903 2.8164 -3.5376 25 1 1.9110 3.4043 -3.5885 26 1 3.6118 5.3347 -6.2239 27 1 4.0736 2.0319 0.4272 28 1 3.3203 -0.9851 0.8342 29 1 4.9959 -0.2464 1.0540 30 1 4.0819 1.2913 2.8532 31 1 2.4062 0.5534 2.6337 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308252602.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:48 Heat of formation + Delta-G solvation = -64.699124 kcal Electronic energy + Delta-G solvation = -14211.399289 eV Core-core repulsion = 11686.729042 eV Total energy + Delta-G solvation = -2524.670247 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.60613 -37.38029 -35.99637 -34.11869 -32.33586 -29.11366 -27.02463 -25.74301 -22.63230 -22.27482 -21.02164 -19.58012 -17.61683 -16.45216 -16.12223 -15.76261 -14.91225 -14.72612 -14.34323 -13.88277 -13.72647 -13.13949 -12.63869 -12.00256 -11.86656 -11.51641 -11.30122 -11.24136 -10.95935 -10.90263 -10.47809 -10.30866 -10.19752 -10.04930 -9.38633 -8.74633 -8.63500 -7.88417 -6.17364 -4.24448 3.22660 3.23728 3.29880 3.32924 3.63897 3.97629 4.16393 4.37212 4.78061 4.98856 5.00767 5.18770 5.28024 5.41795 5.44313 5.63421 5.64513 5.69280 5.79710 5.96189 6.15633 6.34332 7.12409 7.31920 7.44057 7.51422 7.66881 7.96249 8.61678 8.77812 9.09565 9.42348 10.92938 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043406 B = 0.006785 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.911948 B = 4125.901244 C = 4485.493766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.359 6.359 3 C 0.102 3.898 4 H 0.084 0.916 5 C 0.480 3.520 6 O -0.541 6.541 7 N -0.711 5.711 8 C 0.249 3.751 9 C -0.543 4.543 10 H 0.064 0.936 11 C 0.063 3.937 12 N -0.885 5.885 13 Si 0.904 3.096 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 C -0.157 4.157 18 C -0.159 4.159 19 C -0.173 4.173 20 H 0.086 0.914 21 H 0.046 0.954 22 H 0.038 0.962 23 H 0.390 0.610 24 H 0.027 0.973 25 H 0.026 0.974 26 H 0.265 0.735 27 H 0.121 0.879 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.233 -5.245 14.128 15.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.041 3.959 4 H 0.101 0.899 5 C 0.263 3.737 6 O -0.419 6.419 7 N -0.361 5.361 8 C 0.129 3.871 9 C -0.581 4.581 10 H 0.082 0.918 11 C -0.141 4.141 12 N -0.523 5.523 13 Si 0.731 3.269 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.175 4.175 18 C -0.196 4.196 19 C -0.210 4.210 20 H 0.104 0.896 21 H 0.065 0.935 22 H 0.057 0.943 23 H 0.223 0.777 24 H 0.045 0.955 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.139 0.861 28 H 0.125 0.875 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.285 -5.939 13.231 14.682 hybrid contribution 0.210 1.553 0.116 1.571 sum -2.075 -4.386 13.347 14.202 Atomic orbital electron populations 1.22814 0.81020 1.02774 0.99992 1.87918 1.19668 1.25437 1.94557 1.21483 0.94751 0.86210 0.93472 0.89867 1.20990 0.78781 0.82880 0.91029 1.90664 1.51237 1.54070 1.45915 1.46493 1.65060 1.12754 1.11769 1.19114 0.97132 0.94480 0.76420 1.21268 1.46226 0.97497 0.93128 0.91814 1.24963 0.95212 0.98659 0.95222 1.69988 1.47528 1.37227 0.97551 0.86358 0.78518 0.83806 0.78214 1.19621 1.20773 1.20786 1.22303 0.96986 1.00958 0.97289 1.22863 1.00586 0.94284 1.01874 1.22953 1.02972 1.04232 0.90821 0.89567 0.93480 0.94331 0.77738 0.95494 0.95606 0.92484 0.86063 0.87518 0.88951 0.88710 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.81 101.05 1.09 1.49 16 2 O -0.36 -5.76 8.24 -55.09 -0.45 -6.22 16 3 C 0.10 1.61 2.87 -27.88 -0.08 1.53 16 4 H 0.08 1.11 7.79 -51.93 -0.40 0.70 16 5 C 0.48 10.04 7.12 -10.99 -0.08 9.96 16 6 O -0.54 -13.80 16.51 -14.31 -0.24 -14.04 16 7 N -0.71 -15.22 5.44 -61.47 -0.33 -15.55 16 8 C 0.25 6.70 5.43 -5.19 -0.03 6.67 16 9 C -0.54 -14.79 9.28 -34.44 -0.32 -15.11 16 10 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 13 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 14 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 17 C -0.16 -2.15 5.67 -90.62 -0.51 -2.66 16 18 C -0.16 -2.03 9.88 -26.69 -0.26 -2.29 16 19 C -0.17 -1.88 10.19 -26.69 -0.27 -2.15 16 20 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.04 0.40 8.09 -51.93 -0.42 -0.02 16 23 H 0.39 7.09 8.32 -40.82 -0.34 6.75 16 24 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.12 1.65 8.03 -51.93 -0.42 1.24 16 28 H 0.11 1.47 7.06 -51.93 -0.37 1.10 16 29 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 273.23 15.07 4.12 4.12 Total: -1.00 -32.73 273.23 -6.19 -38.92 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -4.44 Total: 3.36 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -0.56 Total: -0.90 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.40 Total: -41.08 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.69 Total: -20.25 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.73 -6.19 -38.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308252602.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.781 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds