Wall clock time and date at job start Sun Mar 29 2020 22:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.08994 * 109.46677 * 29.99907 * 3 2 1 5 5 C 1.50699 * 109.46791 * 270.00175 * 3 2 1 6 6 O 1.21286 * 120.00562 * 354.99886 * 5 3 2 7 7 N 1.34778 * 119.99435 * 174.99856 * 5 3 2 8 8 C 1.46506 * 119.99742 * 180.02562 * 7 5 3 9 9 C 1.50700 * 109.47120 * 180.02562 * 8 7 5 10 10 H 1.08005 * 119.99828 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00105 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99962 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00089 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47004 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47146 * 119.99898 * 13 11 9 16 16 H 1.48502 * 109.47241 * 239.99823 * 13 11 9 17 17 C 1.53000 * 109.47081 * 150.00312 * 3 2 1 18 18 C 1.52995 * 117.49786 * 8.74514 * 17 3 2 19 19 C 1.53003 * 117.49702 * 300.08418 * 17 3 2 20 20 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 22 22 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 23 23 H 0.97002 * 120.00568 * 359.97438 * 7 5 3 24 24 H 1.09003 * 109.47119 * 299.99949 * 8 7 5 25 25 H 1.09001 * 109.47417 * 60.00200 * 8 7 5 26 26 H 0.96996 * 119.99938 * 179.97438 * 12 11 9 27 27 H 1.08997 * 115.54649 * 154.41935 * 17 3 2 28 28 H 1.08996 * 117.50336 * 359.97438 * 18 17 3 29 29 H 1.09004 * 117.49912 * 145.02465 * 18 17 3 30 30 H 1.08993 * 117.49864 * 214.98271 * 19 17 3 31 31 H 1.09003 * 117.49982 * 359.97438 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2146 1.7643 -1.4208 6 8 1.9791 1.0105 -2.3414 7 7 2.6589 3.0124 -1.6685 8 6 2.8570 3.4587 -3.0498 9 6 3.3555 4.8808 -3.0516 10 1 3.5090 5.4004 -2.1173 11 6 3.6156 5.5187 -4.2459 12 7 3.4292 4.8858 -5.3836 13 14 4.2329 7.2818 -4.2482 14 1 4.3591 7.7638 -2.8493 15 1 5.5593 7.3410 -4.9132 16 1 3.2715 8.1419 -4.9838 17 6 3.3590 1.2631 0.7212 18 6 3.9153 -0.1111 1.0990 19 6 3.3639 0.8166 2.1846 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 2.8469 3.6154 -0.9324 24 1 3.5903 2.8164 -3.5376 25 1 1.9110 3.4043 -3.5885 26 1 3.6118 5.3347 -6.2239 27 1 4.0736 2.0319 0.4272 28 1 3.3203 -0.9851 0.8342 29 1 4.9959 -0.2464 1.0540 30 1 4.0819 1.2913 2.8532 31 1 2.4062 0.5534 2.6337 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308252602.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:47 Heat of formation + Delta-G solvation = -87.926429 kcal Electronic energy + Delta-G solvation = -14212.406500 eV Core-core repulsion = 11686.729042 eV Total energy + Delta-G solvation = -2525.677458 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.09826 -38.83761 -37.07923 -36.09925 -34.37851 -30.66043 -28.71540 -27.03782 -24.61552 -23.18941 -22.37567 -21.15171 -19.30261 -17.90156 -17.75706 -17.18353 -16.66033 -16.15679 -15.89182 -15.33528 -15.25741 -14.40955 -14.18279 -14.01933 -13.76101 -12.93474 -12.77531 -12.51388 -12.40018 -12.24088 -12.22929 -11.68541 -11.47614 -11.33828 -11.07199 -10.83594 -10.18760 -9.88320 -8.30797 -6.48032 1.42854 1.44213 1.57818 1.62463 2.21334 2.41584 2.81111 2.96990 3.04215 3.66212 3.87673 3.93983 4.19334 4.27816 4.42793 4.51146 4.58351 4.80424 4.86795 5.01538 5.07944 5.19932 5.25458 5.38236 5.45283 5.63867 5.81856 6.02309 6.62886 6.86025 7.21158 7.43001 8.81860 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043406 B = 0.006785 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.911948 B = 4125.901244 C = 4485.493766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.375 6.375 3 C 0.116 3.884 4 H 0.117 0.883 5 C 0.474 3.526 6 O -0.595 6.595 7 N -0.701 5.701 8 C 0.266 3.734 9 C -0.555 4.555 10 H 0.086 0.914 11 C 0.002 3.998 12 N -0.933 5.933 13 Si 0.987 3.013 14 H -0.251 1.251 15 H -0.279 1.279 16 H -0.278 1.278 17 C -0.180 4.180 18 C -0.173 4.173 19 C -0.136 4.136 20 H 0.104 0.896 21 H 0.022 0.978 22 H 0.072 0.928 23 H 0.409 0.591 24 H -0.015 1.015 25 H -0.014 1.014 26 H 0.269 0.731 27 H 0.120 0.880 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.913 -3.873 16.986 17.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.292 6.292 3 C 0.054 3.946 4 H 0.134 0.866 5 C 0.261 3.739 6 O -0.476 6.476 7 N -0.353 5.353 8 C 0.143 3.857 9 C -0.593 4.593 10 H 0.104 0.896 11 C -0.197 4.197 12 N -0.571 5.571 13 Si 0.810 3.190 14 H -0.174 1.174 15 H -0.205 1.205 16 H -0.204 1.204 17 C -0.198 4.198 18 C -0.210 4.210 19 C -0.172 4.172 20 H 0.123 0.877 21 H 0.041 0.959 22 H 0.091 0.909 23 H 0.245 0.755 24 H 0.003 0.997 25 H 0.004 0.996 26 H 0.078 0.922 27 H 0.138 0.862 28 H 0.111 0.889 29 H 0.119 0.881 30 H 0.137 0.863 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.970 -4.567 16.153 16.902 hybrid contribution 0.063 1.023 -0.789 1.293 sum -1.907 -3.544 15.365 15.883 Atomic orbital electron populations 1.23034 0.79533 1.04275 1.00387 1.87919 1.21425 1.25621 1.94268 1.21466 0.96866 0.86778 0.89456 0.86593 1.22180 0.76753 0.81768 0.93241 1.90632 1.53273 1.55358 1.48381 1.46214 1.65205 1.13694 1.10165 1.18559 0.93893 0.94475 0.78785 1.21654 1.45979 0.97394 0.94271 0.89552 1.26108 0.95058 1.03959 0.94586 1.70153 1.48734 1.39703 0.98547 0.85078 0.77609 0.77108 0.79223 1.17419 1.20468 1.20414 1.22306 0.95920 1.01686 0.99924 1.22921 1.01031 0.93495 1.03565 1.23059 1.03749 1.01297 0.89120 0.87736 0.95921 0.90927 0.75472 0.99690 0.99568 0.92219 0.86226 0.88922 0.88113 0.86291 0.87628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 10.81 113.37 1.23 1.80 16 2 O -0.38 -11.61 8.24 -129.99 -1.07 -12.69 16 3 C 0.12 3.47 2.87 29.85 0.09 3.56 16 4 H 0.12 2.72 7.79 -2.39 -0.02 2.70 16 5 C 0.47 20.20 7.12 87.66 0.62 20.83 16 6 O -0.60 -31.82 16.51 15.94 0.26 -31.56 16 7 N -0.70 -30.46 5.44 -466.76 -2.54 -33.00 16 8 C 0.27 14.91 5.43 85.63 0.46 15.38 16 9 C -0.56 -30.39 9.28 25.60 0.24 -30.15 16 10 H 0.09 4.23 7.60 -2.91 -0.02 4.21 16 11 C 0.00 0.13 5.46 84.65 0.46 0.59 16 12 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 13 Si 0.99 42.27 29.54 68.60 2.03 44.30 16 14 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 15 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 16 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 17 C -0.18 -4.54 5.67 -10.79 -0.06 -4.60 16 18 C -0.17 -4.09 9.88 30.62 0.30 -3.78 16 19 C -0.14 -2.42 10.19 30.62 0.31 -2.10 16 20 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 21 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 22 H 0.07 1.27 8.09 -2.38 -0.02 1.25 16 23 H 0.41 14.45 8.32 -92.71 -0.77 13.68 16 24 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 25 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 26 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 27 H 0.12 3.04 8.03 -2.39 -0.02 3.02 16 28 H 0.09 2.46 7.06 -2.39 -0.02 2.44 16 29 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -74.14 273.23 2.97 -71.17 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.35 Total: 16.83 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 3.65 Total: 1.52 kcal Atomic # 7 Polarization: -87.32 SS G_CDS: -2.25 Total: -89.57 kcal Atomic # 8 Polarization: -43.44 SS G_CDS: -0.81 Total: -44.25 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -74.14 2.97 -71.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308252602.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.752 kcal (2) G-P(sol) polarization free energy of solvation -74.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds