Wall clock time and date at job start Sun Mar 29 2020 22:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37099 * 120.00190 * 2 1 4 4 H 1.08003 * 119.99917 * 151.16383 * 3 2 1 5 5 C 1.38953 * 120.00257 * 331.17344 * 3 2 1 6 6 N 1.31415 * 119.99336 * 331.77819 * 5 3 2 7 7 Si 1.86790 * 120.00171 * 151.77807 * 5 3 2 8 8 H 1.48495 * 109.47377 * 179.97438 * 7 5 3 9 9 H 1.48499 * 109.47249 * 60.00043 * 7 5 3 10 10 H 1.48505 * 109.47162 * 299.99885 * 7 5 3 11 11 C 1.34782 * 119.99813 * 180.02562 * 2 1 3 12 12 O 1.21288 * 119.99690 * 180.02562 * 11 2 1 13 13 C 1.50699 * 120.00190 * 359.97438 * 11 2 1 14 14 C 1.52998 * 109.47168 * 180.02562 * 13 11 2 15 15 H 1.08997 * 110.75439 * 57.01778 * 14 13 11 16 16 C 1.55300 * 110.84823 * 180.71767 * 14 13 11 17 17 C 1.54951 * 100.94463 * 152.31929 * 16 14 13 18 18 O 1.43645 * 105.13532 * 323.55994 * 17 16 14 19 19 C 1.43235 * 109.97486 * 24.42169 * 18 17 16 20 20 H 1.08996 * 109.47411 * 94.71068 * 1 2 3 21 21 H 1.08994 * 109.46949 * 214.70993 * 1 2 3 22 22 H 1.09000 * 109.46929 * 334.70587 * 1 2 3 23 23 H 0.96996 * 120.00146 * 353.85592 * 6 5 3 24 24 H 1.09002 * 109.47125 * 300.01047 * 13 11 2 25 25 H 1.08999 * 109.46384 * 60.00424 * 13 11 2 26 26 H 1.08998 * 111.12784 * 270.24558 * 16 14 13 27 27 H 1.09004 * 111.12392 * 34.40566 * 16 14 13 28 28 H 1.08997 * 110.31221 * 204.64086 * 17 16 14 29 29 H 1.09006 * 110.38624 * 82.51341 * 17 16 14 30 30 H 1.09000 * 109.83330 * 238.78080 * 19 18 17 31 31 H 1.09005 * 109.83339 * 117.80040 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1301 1.2452 0.4511 5 6 1.5850 2.3162 -0.5802 6 7 0.7277 2.1877 -1.5678 7 14 2.0434 4.0161 0.0436 8 1 1.3090 5.0443 -0.7365 9 1 3.5050 4.2246 -0.1163 10 1 1.6811 4.1309 1.4792 11 6 2.1389 -1.1673 -0.0005 12 8 3.3518 -1.1672 -0.0001 13 6 1.3854 -2.4724 -0.0005 14 6 2.3796 -3.6353 -0.0005 15 1 3.0524 -3.5683 0.8545 16 6 1.6357 -4.9984 -0.0187 17 6 2.6841 -5.8963 -0.7228 18 8 3.2991 -5.0521 -1.7090 19 6 3.1748 -3.6783 -1.3232 20 1 -0.3634 -0.0844 -1.0241 21 1 -0.3633 -0.8448 0.5852 22 1 -0.3633 0.9291 0.4391 23 1 0.5568 1.3132 -1.9511 24 1 0.7589 -2.5302 0.8896 25 1 0.7585 -2.5298 -0.8903 26 1 1.4340 -5.3494 0.9933 27 1 0.7167 -4.9366 -0.6015 28 1 2.1951 -6.7441 -1.2024 29 1 3.4279 -6.2450 -0.0063 30 1 2.6396 -3.1245 -2.0946 31 1 4.1639 -3.2450 -1.1742 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308254006.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:42 Heat of formation + Delta-G solvation = -86.007039 kcal Electronic energy + Delta-G solvation = -14596.151441 eV Core-core repulsion = 12070.557213 eV Total energy + Delta-G solvation = -2525.594227 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.50859 -38.20107 -35.00909 -33.08762 -31.54117 -29.67319 -26.99516 -26.22130 -23.82669 -22.28037 -20.71864 -18.90536 -17.31865 -16.61510 -15.97923 -15.44164 -14.87766 -14.55003 -14.32548 -13.78196 -13.17248 -12.93628 -12.76342 -12.02399 -11.75814 -11.50695 -11.43008 -11.24593 -10.98993 -10.84193 -10.55663 -10.45321 -10.20472 -9.99124 -9.27529 -8.94079 -8.36665 -7.82760 -6.63412 -3.91456 3.30437 3.35616 3.55544 3.82091 4.08480 4.22495 4.58016 4.74012 4.97975 5.08066 5.14665 5.36687 5.41031 5.58317 5.71850 5.80356 5.87976 5.94300 6.00205 6.03551 6.17838 6.34634 6.43320 6.52092 6.57841 7.23119 7.90264 8.10022 8.63578 8.92548 9.40927 9.87190 10.62284 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.064994 B = 0.007172 C = 0.006934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.704332 B = 3903.351486 C = 4037.202168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.455 5.455 3 C -0.405 4.405 4 H 0.088 0.912 5 C 0.009 3.991 6 N -0.875 5.875 7 Si 1.073 2.927 8 H -0.280 1.280 9 H -0.283 1.283 10 H -0.285 1.285 11 C 0.445 3.555 12 O -0.579 6.579 13 C -0.123 4.123 14 C -0.098 4.098 15 H 0.089 0.911 16 C -0.155 4.155 17 C 0.052 3.948 18 O -0.393 6.393 19 C 0.064 3.936 20 H 0.044 0.956 21 H 0.045 0.955 22 H 0.070 0.930 23 H 0.274 0.726 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.875 -10.226 3.316 11.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.176 5.176 3 C -0.532 4.532 4 H 0.105 0.895 5 C -0.199 4.199 6 N -0.509 5.509 7 Si 0.899 3.101 8 H -0.205 1.205 9 H -0.209 1.209 10 H -0.211 1.211 11 C 0.234 3.766 12 O -0.464 6.464 13 C -0.163 4.163 14 C -0.117 4.117 15 H 0.107 0.893 16 C -0.193 4.193 17 C -0.025 4.025 18 O -0.313 6.313 19 C -0.012 4.012 20 H 0.062 0.938 21 H 0.063 0.937 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.535 -8.646 2.944 9.479 hybrid contribution -0.010 -1.519 0.340 1.557 sum -2.545 -10.166 3.284 10.982 Atomic orbital electron populations 1.21664 0.82750 1.01371 1.00209 1.43638 1.04447 1.05463 1.64023 1.20323 1.05649 0.86497 1.40776 0.89453 1.26383 0.96120 1.03921 0.93447 1.70772 1.34571 1.27720 1.17858 0.83449 0.76463 0.74162 0.76023 1.20534 1.20918 1.21091 1.20166 0.88240 0.84807 0.83381 1.90509 1.13921 1.87049 1.54882 1.21589 0.98319 0.93572 1.02853 1.22385 0.96836 0.93101 0.99404 0.89310 1.23360 0.99058 0.95309 1.01555 1.23288 0.94211 0.93817 0.91135 1.88365 1.79464 1.17179 1.46295 1.23180 1.01223 0.81564 0.95276 0.93783 0.93684 0.91118 0.91509 0.90208 0.90211 0.90132 0.90404 0.90272 0.92537 0.91581 0.90268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.78 8.47 59.85 0.51 2.29 16 2 N -0.46 -11.54 2.82 -122.19 -0.35 -11.89 16 3 C -0.41 -11.48 8.96 -14.93 -0.13 -11.61 16 4 H 0.09 2.64 7.65 -52.48 -0.40 2.24 16 5 C 0.01 0.24 4.65 -17.46 -0.08 0.16 16 6 N -0.88 -24.48 12.84 55.50 0.71 -23.76 16 7 Si 1.07 23.89 30.00 -169.99 -5.10 18.79 16 8 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 11 C 0.45 10.66 7.42 -10.98 -0.08 10.57 16 12 O -0.58 -15.84 14.66 5.55 0.08 -15.75 16 13 C -0.12 -2.16 3.71 -27.88 -0.10 -2.27 16 14 C -0.10 -1.60 2.59 -88.67 -0.23 -1.83 16 15 H 0.09 1.53 8.05 -51.93 -0.42 1.11 16 16 C -0.16 -1.91 6.62 -24.48 -0.16 -2.07 16 17 C 0.05 0.66 7.78 38.19 0.30 0.96 16 18 O -0.39 -6.66 11.36 -35.23 -0.40 -7.06 16 19 C 0.06 1.15 6.38 37.89 0.24 1.39 16 20 H 0.04 0.92 6.99 -51.93 -0.36 0.55 16 21 H 0.04 0.77 6.64 -51.93 -0.34 0.42 16 22 H 0.07 1.56 7.44 -51.93 -0.39 1.18 16 23 H 0.27 7.67 6.58 -40.82 -0.27 7.40 16 24 H 0.08 1.23 7.41 -51.93 -0.38 0.84 16 25 H 0.08 1.31 8.04 -51.93 -0.42 0.90 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.25 7.76 -51.93 -0.40 0.84 16 31 H 0.08 1.58 7.72 -51.93 -0.40 1.18 16 LS Contribution 256.33 15.07 3.86 3.86 Total: -1.00 -32.01 256.33 -5.20 -37.21 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.27 Total: 1.01 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 0.25 Total: -2.41 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.37 Total: -35.65 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.32 Total: -22.81 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -5.10 Total: 18.79 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -32.01 -5.20 -37.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308254006.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.795 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds