Wall clock time and date at job start Sun Mar 29 2020 22:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37099 * 120.00190 * 2 1 4 4 H 1.08003 * 119.99917 * 151.16383 * 3 2 1 5 5 C 1.38953 * 120.00257 * 331.17344 * 3 2 1 6 6 N 1.31415 * 119.99336 * 331.77819 * 5 3 2 7 7 Si 1.86790 * 120.00171 * 151.77807 * 5 3 2 8 8 H 1.48495 * 109.47377 * 179.97438 * 7 5 3 9 9 H 1.48499 * 109.47249 * 60.00043 * 7 5 3 10 10 H 1.48505 * 109.47162 * 299.99885 * 7 5 3 11 11 C 1.34782 * 119.99813 * 180.02562 * 2 1 3 12 12 O 1.21288 * 119.99690 * 180.02562 * 11 2 1 13 13 C 1.50699 * 120.00190 * 359.97438 * 11 2 1 14 14 C 1.52998 * 109.47168 * 180.02562 * 13 11 2 15 15 H 1.08997 * 110.75439 * 57.01778 * 14 13 11 16 16 C 1.55300 * 110.84823 * 180.71767 * 14 13 11 17 17 C 1.54951 * 100.94463 * 152.31929 * 16 14 13 18 18 O 1.43645 * 105.13532 * 323.55994 * 17 16 14 19 19 C 1.43235 * 109.97486 * 24.42169 * 18 17 16 20 20 H 1.08996 * 109.47411 * 94.71068 * 1 2 3 21 21 H 1.08994 * 109.46949 * 214.70993 * 1 2 3 22 22 H 1.09000 * 109.46929 * 334.70587 * 1 2 3 23 23 H 0.96996 * 120.00146 * 353.85592 * 6 5 3 24 24 H 1.09002 * 109.47125 * 300.01047 * 13 11 2 25 25 H 1.08999 * 109.46384 * 60.00424 * 13 11 2 26 26 H 1.08998 * 111.12784 * 270.24558 * 16 14 13 27 27 H 1.09004 * 111.12392 * 34.40566 * 16 14 13 28 28 H 1.08997 * 110.31221 * 204.64086 * 17 16 14 29 29 H 1.09006 * 110.38624 * 82.51341 * 17 16 14 30 30 H 1.09000 * 109.83330 * 238.78080 * 19 18 17 31 31 H 1.09005 * 109.83339 * 117.80040 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1301 1.2452 0.4511 5 6 1.5850 2.3162 -0.5802 6 7 0.7277 2.1877 -1.5678 7 14 2.0434 4.0161 0.0436 8 1 1.3090 5.0443 -0.7365 9 1 3.5050 4.2246 -0.1163 10 1 1.6811 4.1309 1.4792 11 6 2.1389 -1.1673 -0.0005 12 8 3.3518 -1.1672 -0.0001 13 6 1.3854 -2.4724 -0.0005 14 6 2.3796 -3.6353 -0.0005 15 1 3.0524 -3.5683 0.8545 16 6 1.6357 -4.9984 -0.0187 17 6 2.6841 -5.8963 -0.7228 18 8 3.2991 -5.0521 -1.7090 19 6 3.1748 -3.6783 -1.3232 20 1 -0.3634 -0.0844 -1.0241 21 1 -0.3633 -0.8448 0.5852 22 1 -0.3633 0.9291 0.4391 23 1 0.5568 1.3132 -1.9511 24 1 0.7589 -2.5302 0.8896 25 1 0.7585 -2.5298 -0.8903 26 1 1.4340 -5.3494 0.9933 27 1 0.7167 -4.9366 -0.6015 28 1 2.1951 -6.7441 -1.2024 29 1 3.4279 -6.2450 -0.0063 30 1 2.6396 -3.1245 -2.0946 31 1 4.1639 -3.2450 -1.1742 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308254006.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:42 Heat of formation + Delta-G solvation = -108.262367 kcal Electronic energy + Delta-G solvation = -14597.116504 eV Core-core repulsion = 12070.557213 eV Total energy + Delta-G solvation = -2526.559291 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.00699 -39.82888 -36.96484 -34.52463 -33.52379 -30.85616 -28.66391 -27.90731 -25.73703 -23.43247 -22.13182 -20.63784 -19.29901 -17.91463 -17.65487 -16.90390 -16.60957 -16.26500 -15.67923 -15.55715 -14.69491 -14.46901 -14.07917 -13.66479 -13.60599 -13.09811 -13.06862 -12.61939 -12.52534 -12.17807 -11.96886 -11.92796 -11.82446 -11.71275 -10.95167 -10.57354 -10.28563 -9.85462 -8.78290 -6.08301 1.50946 1.53939 1.82091 1.98993 2.39644 2.83613 2.94679 3.05304 3.48858 3.75758 3.87358 4.00601 4.24522 4.33712 4.38248 4.48648 4.58224 4.63660 4.75630 4.79982 4.87601 4.90194 4.94772 5.07021 5.26863 5.78871 5.89615 6.01828 6.61543 6.90552 7.40174 7.91722 8.46636 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.064994 B = 0.007172 C = 0.006934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.704332 B = 3903.351486 C = 4037.202168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.476 5.476 3 C -0.435 4.435 4 H 0.054 0.946 5 C -0.023 4.023 6 N -0.887 5.887 7 Si 1.120 2.880 8 H -0.274 1.274 9 H -0.280 1.280 10 H -0.266 1.266 11 C 0.435 3.565 12 O -0.624 6.624 13 C -0.109 4.109 14 C -0.099 4.099 15 H 0.075 0.925 16 C -0.138 4.138 17 C 0.041 3.959 18 O -0.412 6.412 19 C 0.067 3.933 20 H 0.043 0.957 21 H 0.092 0.908 22 H 0.055 0.945 23 H 0.265 0.735 24 H 0.115 0.885 25 H 0.098 0.902 26 H 0.111 0.889 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.619 -11.496 4.192 13.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.197 5.197 3 C -0.562 4.562 4 H 0.072 0.928 5 C -0.226 4.226 6 N -0.521 5.521 7 Si 0.940 3.060 8 H -0.198 1.198 9 H -0.206 1.206 10 H -0.191 1.191 11 C 0.226 3.774 12 O -0.511 6.511 13 C -0.149 4.149 14 C -0.118 4.118 15 H 0.093 0.907 16 C -0.175 4.175 17 C -0.035 4.035 18 O -0.332 6.332 19 C -0.010 4.010 20 H 0.061 0.939 21 H 0.110 0.890 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.133 0.867 25 H 0.116 0.884 26 H 0.129 0.871 27 H 0.112 0.888 28 H 0.126 0.874 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.310 -9.948 3.824 11.496 hybrid contribution 0.588 -1.226 0.043 1.360 sum -3.722 -11.173 3.866 12.395 Atomic orbital electron populations 1.21737 0.80151 1.02622 1.00896 1.43929 1.06190 1.05116 1.64415 1.20273 1.05399 0.88757 1.41818 0.92789 1.27709 0.95292 1.06939 0.92687 1.70882 1.35500 1.27166 1.18577 0.82861 0.76377 0.70158 0.76568 1.19842 1.20576 1.19071 1.21353 0.88198 0.86598 0.81253 1.90483 1.16327 1.88057 1.56261 1.21561 0.98260 0.89811 1.05244 1.22365 0.96747 0.95167 0.97537 0.90654 1.23342 0.98736 0.91824 1.03624 1.23644 0.94792 0.94009 0.91013 1.88345 1.80260 1.16733 1.47854 1.22957 0.99580 0.82335 0.96096 0.93851 0.88990 0.92646 0.92504 0.86701 0.88381 0.87081 0.88829 0.87437 0.91553 0.93060 0.93647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.63 8.47 127.77 1.08 4.71 16 2 N -0.48 -24.23 2.82 -658.89 -1.86 -26.09 16 3 C -0.44 -25.27 8.96 84.04 0.75 -24.52 16 4 H 0.05 3.42 7.65 -2.91 -0.02 3.40 16 5 C -0.02 -1.25 4.65 84.93 0.39 -0.86 16 6 N -0.89 -49.82 12.84 21.66 0.28 -49.54 16 7 Si 1.12 48.21 30.00 68.60 2.06 50.27 16 8 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 9 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 10 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 11 C 0.44 20.89 7.42 87.66 0.65 21.54 16 12 O -0.62 -35.38 14.66 -3.06 -0.04 -35.42 16 13 C -0.11 -3.56 3.71 29.85 0.11 -3.45 16 14 C -0.10 -3.05 2.59 -9.53 -0.02 -3.07 16 15 H 0.07 2.52 8.05 -2.39 -0.02 2.51 16 16 C -0.14 -2.82 6.62 32.05 0.21 -2.61 16 17 C 0.04 0.92 7.78 72.65 0.57 1.48 16 18 O -0.41 -13.53 11.36 -148.98 -1.69 -15.23 16 19 C 0.07 2.44 6.38 72.45 0.46 2.90 16 20 H 0.04 1.75 6.99 -2.39 -0.02 1.74 16 21 H 0.09 2.81 6.64 -2.39 -0.02 2.80 16 22 H 0.05 2.40 7.44 -2.39 -0.02 2.38 16 23 H 0.26 14.99 6.58 -92.71 -0.61 14.38 16 24 H 0.11 3.00 7.41 -2.39 -0.02 2.99 16 25 H 0.10 2.91 8.04 -2.39 -0.02 2.89 16 26 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.09 1.68 8.04 -2.38 -0.02 1.66 16 28 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.05 1.98 7.76 -2.39 -0.02 1.96 16 31 H 0.05 1.92 7.72 -2.38 -0.02 1.90 16 Total: -1.00 -72.40 256.33 4.21 -68.19 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 1.27 Total: 11.70 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 4.21 Total: -3.87 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -1.58 Total: -75.63 kcal Atomic # 8 Polarization: -48.91 SS G_CDS: -1.74 Total: -50.65 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.06 Total: 50.27 kcal Total: -72.40 4.21 -68.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308254006.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.077 kcal (2) G-P(sol) polarization free energy of solvation -72.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds