Wall clock time and date at job start Sun Mar 29 2020 22:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37095 * 120.00055 * 2 1 4 4 H 1.07995 * 120.00024 * 202.40845 * 3 2 1 5 5 C 1.38950 * 119.99956 * 22.40181 * 3 2 1 6 6 N 1.31412 * 120.00117 * 11.59671 * 5 3 2 7 7 Si 1.86799 * 120.00167 * 191.59484 * 5 3 2 8 8 H 1.48505 * 109.47052 * 89.99957 * 7 5 3 9 9 H 1.48495 * 109.47248 * 210.00361 * 7 5 3 10 10 H 1.48500 * 109.46924 * 330.00460 * 7 5 3 11 11 C 1.34779 * 119.99947 * 179.97438 * 2 1 3 12 12 O 1.21293 * 119.99836 * 180.02562 * 11 2 1 13 13 C 1.50697 * 119.99928 * 0.02562 * 11 2 1 14 14 C 1.53010 * 109.47000 * 179.97438 * 13 11 2 15 15 H 1.08996 * 110.79833 * 305.70059 * 14 13 11 16 16 C 1.54807 * 110.90630 * 182.07301 * 14 13 11 17 17 C 1.54100 * 104.18562 * 220.88721 * 16 14 13 18 18 O 1.43748 * 107.29482 * 357.97016 * 17 16 14 19 19 C 1.44378 * 106.97298 * 26.51436 * 18 17 16 20 20 H 1.09003 * 109.47750 * 272.16104 * 1 2 3 21 21 H 1.09005 * 109.47351 * 32.16532 * 1 2 3 22 22 H 1.09003 * 109.47324 * 152.16058 * 1 2 3 23 23 H 0.96999 * 120.00411 * 179.97438 * 6 5 3 24 24 H 1.08995 * 109.47704 * 60.00103 * 13 11 2 25 25 H 1.09004 * 109.47107 * 299.99744 * 13 11 2 26 26 H 1.09003 * 110.48860 * 339.56030 * 16 14 13 27 27 H 1.08992 * 110.49038 * 102.21116 * 16 14 13 28 28 H 1.09007 * 109.88230 * 117.39756 * 17 16 14 29 29 H 1.08998 * 109.87671 * 238.54494 * 17 16 14 30 30 H 1.08999 * 110.61639 * 201.43793 * 19 18 17 31 31 H 1.09001 * 110.61860 * 78.43840 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1692 1.2226 -0.3565 5 6 1.5343 2.3452 0.4586 6 7 0.3895 2.2708 1.0994 7 14 2.3335 4.0078 0.1643 8 1 1.8581 4.5637 -1.1281 9 1 1.9686 4.9343 1.2659 10 1 3.8091 3.8470 0.1210 11 6 2.1388 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3853 -2.4723 0.0005 14 6 2.3796 -3.6353 0.0005 15 1 3.0831 -3.5431 -0.8269 16 6 1.6401 -4.9943 -0.0518 17 6 2.4246 -5.8890 0.9273 18 8 3.5235 -5.1108 1.4306 19 6 3.1276 -3.7245 1.3551 20 1 -0.3635 0.0388 1.0269 21 1 -0.3634 0.8700 -0.5471 22 1 -0.3634 -0.9087 -0.4799 23 1 -0.0405 3.0790 1.4199 24 1 0.7590 -2.5303 -0.8896 25 1 0.7583 -2.5298 0.8903 26 1 0.6079 -4.8800 0.2793 27 1 1.6750 -5.4091 -1.0591 28 1 1.7782 -6.1934 1.7506 29 1 2.8017 -6.7683 0.4050 30 1 4.0029 -3.0749 1.3538 31 1 2.4609 -3.4703 2.1791 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308254007.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:45 Heat of formation + Delta-G solvation = -81.653269 kcal Electronic energy + Delta-G solvation = -14548.847744 eV Core-core repulsion = 12023.442310 eV Total energy + Delta-G solvation = -2525.405434 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.39908 -38.06179 -34.74118 -33.00010 -31.56956 -29.57690 -27.03665 -25.92484 -24.07291 -22.37804 -20.47609 -18.70537 -16.87941 -16.47052 -15.71910 -15.33085 -15.06431 -14.47330 -14.16122 -13.94811 -13.30984 -12.74396 -12.23597 -11.96023 -11.53103 -11.38328 -11.30642 -11.15564 -10.98117 -10.86486 -10.49200 -10.34045 -10.32102 -10.14965 -9.40936 -9.02336 -8.35437 -7.67795 -6.30636 -3.87317 3.16586 3.25285 3.31020 3.90570 4.11998 4.24261 4.72215 4.92807 5.05893 5.12348 5.23333 5.40110 5.53320 5.69640 5.86115 5.88480 5.97727 6.03316 6.09092 6.20761 6.40818 6.47417 6.63071 6.87835 7.13723 7.21998 7.57243 8.14232 8.49508 9.19983 9.44249 9.99811 10.73095 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.063259 B = 0.007180 C = 0.006794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.520970 B = 3898.672506 C = 4120.283192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.449 5.449 3 C -0.306 4.306 4 H 0.099 0.901 5 C 0.029 3.971 6 N -0.885 5.885 7 Si 0.927 3.073 8 H -0.278 1.278 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.444 3.556 12 O -0.590 6.590 13 C -0.121 4.121 14 C -0.098 4.098 15 H 0.090 0.910 16 C -0.155 4.155 17 C 0.047 3.953 18 O -0.386 6.386 19 C 0.057 3.943 20 H 0.057 0.943 21 H 0.068 0.932 22 H 0.026 0.974 23 H 0.267 0.733 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.868 -9.658 -1.549 10.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.167 5.167 3 C -0.434 4.434 4 H 0.116 0.884 5 C -0.174 4.174 6 N -0.525 5.525 7 Si 0.753 3.247 8 H -0.204 1.204 9 H -0.210 1.210 10 H -0.194 1.194 11 C 0.232 3.768 12 O -0.475 6.475 13 C -0.161 4.161 14 C -0.117 4.117 15 H 0.108 0.892 16 C -0.193 4.193 17 C -0.030 4.030 18 O -0.305 6.305 19 C -0.019 4.019 20 H 0.076 0.924 21 H 0.086 0.914 22 H 0.044 0.956 23 H 0.077 0.923 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.125 0.875 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.229 -9.573 -1.379 9.925 hybrid contribution -0.272 1.031 -0.134 1.075 sum -2.501 -8.541 -1.513 9.028 Atomic orbital electron populations 1.21502 0.81222 0.98735 1.01668 1.43616 1.05503 1.04889 1.62739 1.19678 0.99471 0.83917 1.40297 0.88367 1.25342 0.96535 1.00083 0.95420 1.69996 1.17452 1.29227 1.35821 0.85915 0.79676 0.81243 0.77820 1.20411 1.20956 1.19366 1.20055 0.88125 0.84851 0.83746 1.90499 1.13940 1.87158 1.55885 1.21536 0.98233 0.93517 1.02838 1.22392 0.97119 0.92521 0.99668 0.89184 1.23040 1.00075 0.95896 1.00300 1.23087 0.88992 0.94926 0.95977 1.88843 1.38319 1.18138 1.85191 1.23679 1.00732 0.81980 0.95541 0.92440 0.91360 0.95555 0.92303 0.90243 0.90251 0.90690 0.90738 0.92900 0.90465 0.87511 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.49 8.52 59.85 0.51 3.00 16 2 N -0.45 -11.49 3.02 -122.19 -0.37 -11.86 16 3 C -0.31 -8.57 9.29 -14.93 -0.14 -8.70 16 4 H 0.10 2.88 7.41 -52.49 -0.39 2.49 16 5 C 0.03 0.77 5.11 -17.47 -0.09 0.68 16 6 N -0.89 -23.67 10.62 55.50 0.59 -23.08 16 7 Si 0.93 20.88 29.57 -169.99 -5.03 15.86 16 8 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 11 C 0.44 10.63 7.44 -10.99 -0.08 10.54 16 12 O -0.59 -15.93 14.44 5.55 0.08 -15.85 16 13 C -0.12 -2.15 3.63 -27.88 -0.10 -2.25 16 14 C -0.10 -1.62 2.68 -88.61 -0.24 -1.86 16 15 H 0.09 1.62 7.97 -51.93 -0.41 1.21 16 16 C -0.16 -1.96 6.60 -25.20 -0.17 -2.12 16 17 C 0.05 0.61 7.70 37.73 0.29 0.90 16 18 O -0.39 -6.53 11.52 -35.23 -0.41 -6.93 16 19 C 0.06 1.00 6.56 38.21 0.25 1.25 16 20 H 0.06 1.32 7.54 -51.93 -0.39 0.93 16 21 H 0.07 1.60 7.06 -51.93 -0.37 1.23 16 22 H 0.03 0.47 6.36 -51.93 -0.33 0.14 16 23 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 24 H 0.08 1.26 7.41 -51.93 -0.38 0.87 16 25 H 0.08 1.32 8.01 -51.93 -0.42 0.90 16 26 H 0.07 0.84 7.86 -51.93 -0.41 0.43 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.11 2.13 7.30 -51.93 -0.38 1.75 16 31 H 0.05 0.94 7.98 -51.93 -0.41 0.52 16 LS Contribution 255.65 15.07 3.85 3.85 Total: -1.00 -30.65 255.65 -5.34 -35.99 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -4.30 Total: 0.57 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 0.24 Total: 1.45 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.22 Total: -34.94 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.33 Total: -22.78 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.65 -5.34 -35.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308254007.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.661 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds