Wall clock time and date at job start Sun Mar 29 2020 22:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37095 * 120.00055 * 2 1 4 4 H 1.07995 * 120.00024 * 202.40845 * 3 2 1 5 5 C 1.38950 * 119.99956 * 22.40181 * 3 2 1 6 6 N 1.31412 * 120.00117 * 11.59671 * 5 3 2 7 7 Si 1.86799 * 120.00167 * 191.59484 * 5 3 2 8 8 H 1.48505 * 109.47052 * 89.99957 * 7 5 3 9 9 H 1.48495 * 109.47248 * 210.00361 * 7 5 3 10 10 H 1.48500 * 109.46924 * 330.00460 * 7 5 3 11 11 C 1.34779 * 119.99947 * 179.97438 * 2 1 3 12 12 O 1.21293 * 119.99836 * 180.02562 * 11 2 1 13 13 C 1.50697 * 119.99928 * 0.02562 * 11 2 1 14 14 C 1.53010 * 109.47000 * 179.97438 * 13 11 2 15 15 H 1.08996 * 110.79833 * 305.70059 * 14 13 11 16 16 C 1.54807 * 110.90630 * 182.07301 * 14 13 11 17 17 C 1.54100 * 104.18562 * 220.88721 * 16 14 13 18 18 O 1.43748 * 107.29482 * 357.97016 * 17 16 14 19 19 C 1.44378 * 106.97298 * 26.51436 * 18 17 16 20 20 H 1.09003 * 109.47750 * 272.16104 * 1 2 3 21 21 H 1.09005 * 109.47351 * 32.16532 * 1 2 3 22 22 H 1.09003 * 109.47324 * 152.16058 * 1 2 3 23 23 H 0.96999 * 120.00411 * 179.97438 * 6 5 3 24 24 H 1.08995 * 109.47704 * 60.00103 * 13 11 2 25 25 H 1.09004 * 109.47107 * 299.99744 * 13 11 2 26 26 H 1.09003 * 110.48860 * 339.56030 * 16 14 13 27 27 H 1.08992 * 110.49038 * 102.21116 * 16 14 13 28 28 H 1.09007 * 109.88230 * 117.39756 * 17 16 14 29 29 H 1.08998 * 109.87671 * 238.54494 * 17 16 14 30 30 H 1.08999 * 110.61639 * 201.43793 * 19 18 17 31 31 H 1.09001 * 110.61860 * 78.43840 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1692 1.2226 -0.3565 5 6 1.5343 2.3452 0.4586 6 7 0.3895 2.2708 1.0994 7 14 2.3335 4.0078 0.1643 8 1 1.8581 4.5637 -1.1281 9 1 1.9686 4.9343 1.2659 10 1 3.8091 3.8470 0.1210 11 6 2.1388 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3853 -2.4723 0.0005 14 6 2.3796 -3.6353 0.0005 15 1 3.0831 -3.5431 -0.8269 16 6 1.6401 -4.9943 -0.0518 17 6 2.4246 -5.8890 0.9273 18 8 3.5235 -5.1108 1.4306 19 6 3.1276 -3.7245 1.3551 20 1 -0.3635 0.0388 1.0269 21 1 -0.3634 0.8700 -0.5471 22 1 -0.3634 -0.9087 -0.4799 23 1 -0.0405 3.0790 1.4199 24 1 0.7590 -2.5303 -0.8896 25 1 0.7583 -2.5298 0.8903 26 1 0.6079 -4.8800 0.2793 27 1 1.6750 -5.4091 -1.0591 28 1 1.7782 -6.1934 1.7506 29 1 2.8017 -6.7683 0.4050 30 1 4.0029 -3.0749 1.3538 31 1 2.4609 -3.4703 2.1791 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308254007.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:45 Heat of formation + Delta-G solvation = -102.585328 kcal Electronic energy + Delta-G solvation = -14549.755426 eV Core-core repulsion = 12023.442310 eV Total energy + Delta-G solvation = -2526.313116 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.86539 -39.69980 -36.68338 -34.43150 -33.54294 -30.75817 -28.70628 -27.64146 -25.93953 -23.56837 -21.81758 -20.40063 -18.87600 -17.97186 -17.39364 -16.63491 -16.47163 -16.29313 -15.74467 -15.65673 -14.67892 -14.28270 -13.81037 -13.66695 -13.28198 -13.09654 -12.80505 -12.63283 -12.54113 -12.33633 -12.20125 -12.07726 -11.73555 -11.48400 -11.01100 -10.60786 -10.27788 -9.67404 -8.32402 -5.97748 1.36770 1.40130 1.52226 2.06226 2.27778 2.94889 3.10099 3.19352 3.65625 3.87543 3.98975 4.15153 4.27194 4.36890 4.56903 4.61095 4.67847 4.85540 4.89671 4.95568 4.97086 5.08288 5.19998 5.34256 5.41770 5.45026 5.94937 6.11027 6.50085 7.18705 7.50822 8.06596 8.69062 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.063259 B = 0.007180 C = 0.006794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.520970 B = 3898.672506 C = 4120.283192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.468 5.468 3 C -0.344 4.344 4 H 0.069 0.931 5 C -0.004 4.004 6 N -0.898 5.898 7 Si 0.988 3.012 8 H -0.265 1.265 9 H -0.273 1.273 10 H -0.278 1.278 11 C 0.433 3.567 12 O -0.631 6.631 13 C -0.107 4.107 14 C -0.099 4.099 15 H 0.068 0.932 16 C -0.142 4.142 17 C 0.038 3.962 18 O -0.407 6.407 19 C 0.057 3.943 20 H 0.045 0.955 21 H 0.049 0.951 22 H 0.073 0.927 23 H 0.273 0.727 24 H 0.110 0.890 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.585 -10.711 -1.898 11.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.187 5.187 3 C -0.473 4.473 4 H 0.087 0.913 5 C -0.205 4.205 6 N -0.537 5.537 7 Si 0.812 3.188 8 H -0.190 1.190 9 H -0.198 1.198 10 H -0.203 1.203 11 C 0.223 3.777 12 O -0.519 6.519 13 C -0.147 4.147 14 C -0.118 4.118 15 H 0.086 0.914 16 C -0.179 4.179 17 C -0.038 4.038 18 O -0.327 6.327 19 C -0.019 4.019 20 H 0.064 0.936 21 H 0.068 0.932 22 H 0.091 0.909 23 H 0.082 0.918 24 H 0.128 0.872 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.114 0.886 28 H 0.090 0.910 29 H 0.116 0.884 30 H 0.088 0.912 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.982 -10.643 -1.729 11.495 hybrid contribution 0.291 1.301 -0.003 1.333 sum -3.691 -9.342 -1.732 10.193 Atomic orbital electron populations 1.21461 0.79262 1.00255 1.01167 1.43913 1.06856 1.04781 1.63178 1.19611 0.99143 0.86070 1.42428 0.91287 1.26060 0.97047 1.02786 0.94626 1.70065 1.17909 1.30309 1.35429 0.85012 0.78160 0.77203 0.78444 1.19016 1.19809 1.20295 1.21202 0.88108 0.86488 0.81860 1.90474 1.16187 1.88080 1.57152 1.21512 0.98170 0.89905 1.05119 1.22338 0.96924 0.94558 0.97986 0.91375 1.23012 1.00535 0.92732 1.01617 1.23409 0.88427 0.95038 0.96962 1.88815 1.40400 1.17782 1.85722 1.23500 0.99407 0.82311 0.96681 0.93600 0.93163 0.90878 0.91770 0.87167 0.88211 0.88310 0.88645 0.91023 0.88403 0.91216 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.24 8.52 127.77 1.09 6.33 16 2 N -0.47 -24.14 3.02 -658.89 -1.99 -26.13 16 3 C -0.34 -19.83 9.29 84.04 0.78 -19.05 16 4 H 0.07 4.27 7.41 -2.91 -0.02 4.25 16 5 C 0.00 -0.20 5.11 84.93 0.43 0.23 16 6 N -0.90 -47.79 10.62 21.66 0.23 -47.56 16 7 Si 0.99 43.00 29.57 68.60 2.03 45.03 16 8 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 9 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 C 0.43 20.84 7.44 87.66 0.65 21.50 16 12 O -0.63 -35.43 14.44 -3.07 -0.04 -35.47 16 13 C -0.11 -3.56 3.63 29.85 0.11 -3.45 16 14 C -0.10 -3.11 2.68 -9.49 -0.03 -3.14 16 15 H 0.07 2.44 7.97 -2.39 -0.02 2.42 16 16 C -0.14 -3.00 6.60 31.58 0.21 -2.80 16 17 C 0.04 0.85 7.70 72.35 0.56 1.41 16 18 O -0.41 -13.39 11.52 -148.98 -1.72 -15.10 16 19 C 0.06 2.03 6.56 72.66 0.48 2.51 16 20 H 0.05 2.06 7.54 -2.39 -0.02 2.04 16 21 H 0.05 2.31 7.06 -2.38 -0.02 2.30 16 22 H 0.07 2.41 6.36 -2.39 -0.02 2.39 16 23 H 0.27 13.59 8.31 -92.71 -0.77 12.81 16 24 H 0.11 3.02 7.41 -2.39 -0.02 3.00 16 25 H 0.10 2.96 8.01 -2.38 -0.02 2.94 16 26 H 0.10 1.68 7.86 -2.39 -0.02 1.66 16 27 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.07 2.94 7.30 -2.39 -0.02 2.92 16 31 H 0.06 2.00 7.98 -2.39 -0.02 1.98 16 Total: -1.00 -68.65 255.65 3.90 -64.75 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.11 Total: 10.95 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 4.28 Total: 3.54 kcal Atomic # 7 Polarization: -71.93 SS G_CDS: -1.76 Total: -73.69 kcal Atomic # 8 Polarization: -48.82 SS G_CDS: -1.76 Total: -50.58 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -68.65 3.90 -64.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308254007.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.831 kcal (2) G-P(sol) polarization free energy of solvation -68.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds