Wall clock time and date at job start Sun Mar 29 2020 22:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00192 * 2 1 4 4 C 1.53000 * 109.47217 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47173 * 179.97438 * 4 3 2 6 6 C 1.53004 * 113.25266 * 47.05249 * 5 4 3 7 7 C 1.53514 * 114.17147 * 180.02562 * 5 4 3 8 8 N 1.47482 * 87.93039 * 87.81652 * 7 5 4 9 9 C 1.46901 * 110.99764 * 138.70591 * 8 7 5 10 10 C 1.50701 * 109.46921 * 169.99672 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47094 * 90.00289 * 14 12 10 16 16 H 1.48505 * 109.47195 * 210.00171 * 14 12 10 17 17 H 1.48493 * 109.47449 * 330.00136 * 14 12 10 18 18 C 1.47480 * 87.83699 * 27.01095 * 8 7 5 19 19 H 1.09002 * 109.46794 * 300.00029 * 1 2 3 20 20 H 1.08997 * 109.47266 * 59.99840 * 1 2 3 21 21 H 1.08998 * 109.47049 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47139 * 59.99996 * 3 2 1 23 23 H 1.08999 * 109.46977 * 300.00463 * 3 2 1 24 24 H 1.09003 * 109.47078 * 59.99948 * 4 3 2 25 25 H 1.08999 * 109.47516 * 300.00123 * 4 3 2 26 26 H 1.09007 * 109.46728 * 192.94959 * 6 5 4 27 27 H 1.08997 * 109.47170 * 312.94552 * 6 5 4 28 28 H 1.08994 * 109.47204 * 72.95564 * 6 5 4 29 29 H 1.08994 * 113.47382 * 333.04496 * 7 5 4 30 30 H 1.09003 * 113.47448 * 202.58404 * 7 5 4 31 31 H 1.09002 * 109.47401 * 49.99700 * 9 8 7 32 32 H 1.09001 * 109.46874 * 289.99713 * 9 8 7 33 33 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 34 34 H 1.08999 * 113.47664 * 87.75895 * 18 8 7 35 35 H 1.08994 * 113.47488 * 218.22090 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 6 3.5290 3.5239 1.0277 7 6 5.6930 2.5868 -0.0026 8 7 5.6386 2.5304 -1.4753 9 6 6.6462 3.4163 -2.0736 10 6 6.7305 3.1529 -3.5550 11 1 6.0984 2.4028 -4.0070 12 6 7.6137 3.8704 -4.3336 13 7 8.3830 4.7841 -3.7834 14 14 7.7176 3.5444 -6.1700 15 1 6.7589 4.4254 -6.8841 16 1 9.0963 3.8250 -6.6454 17 1 7.3803 2.1238 -6.4405 18 6 4.3266 3.1993 -1.3968 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 1.6887 1.8464 0.8900 23 1 1.6886 1.8463 -0.8899 24 1 3.8568 0.6438 -0.8909 25 1 3.8575 0.6435 0.8891 26 1 3.8460 4.5471 0.8253 27 1 2.4429 3.4604 0.9624 28 1 3.8504 3.2354 2.0284 29 1 6.1302 1.6970 0.4503 30 1 6.1248 3.5113 0.3809 31 1 7.6164 3.2252 -1.6149 32 1 6.3628 4.4552 -1.9047 33 1 9.0047 5.2886 -4.3311 34 1 4.3938 4.2871 -1.3854 35 1 3.6059 2.8285 -2.1256 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308254640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:21 Heat of formation + Delta-G solvation = -20.975852 kcal Electronic energy + Delta-G solvation = -14447.715381 eV Core-core repulsion = 12060.774212 eV Total energy + Delta-G solvation = -2386.941169 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.92525 -37.71318 -33.66422 -32.22461 -29.24188 -27.62118 -26.33219 -25.32917 -24.40357 -22.52564 -20.55589 -17.92568 -16.45114 -16.29052 -16.00642 -15.08721 -14.84980 -14.53809 -14.19434 -13.76914 -13.32855 -12.65355 -12.43226 -12.11680 -11.94411 -11.67027 -11.35525 -11.22802 -11.00522 -10.86782 -10.70030 -10.40145 -10.18044 -9.66780 -9.58776 -9.48482 -9.16506 -8.40354 -7.76655 -6.00665 -4.01478 3.33729 3.39476 3.45132 3.75876 4.45506 4.70526 4.89401 5.15769 5.17912 5.21199 5.31052 5.34604 5.44952 5.51435 5.54814 5.66448 5.83618 5.91403 6.03921 6.11884 6.18455 6.24326 6.30557 6.43007 6.59495 6.70886 6.75387 7.18622 7.24441 7.71307 7.91576 8.16898 8.51788 9.06378 9.62528 11.10498 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.040029 B = 0.006349 C = 0.005730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.321425 B = 4408.903900 C = 4885.342653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.061 3.939 4 C -0.083 4.083 5 C -0.097 4.097 6 C -0.139 4.139 7 C 0.006 3.994 8 N -0.465 5.465 9 C 0.158 3.842 10 C -0.502 4.502 11 H 0.063 0.937 12 C 0.053 3.947 13 N -0.901 5.901 14 Si 0.899 3.101 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.018 3.982 19 H 0.037 0.963 20 H 0.040 0.960 21 H 0.082 0.918 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.027 0.973 32 H 0.002 0.998 33 H 0.261 0.739 34 H 0.062 0.938 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.895 -4.135 9.185 16.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.313 6.313 3 C -0.015 4.015 4 C -0.120 4.120 5 C -0.097 4.097 6 C -0.197 4.197 7 C -0.124 4.124 8 N -0.187 5.187 9 C 0.032 3.968 10 C -0.541 4.541 11 H 0.081 0.919 12 C -0.148 4.148 13 N -0.541 5.541 14 Si 0.726 3.274 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.197 1.197 18 C -0.111 4.111 19 H 0.056 0.944 20 H 0.058 0.942 21 H 0.101 0.899 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.103 0.897 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.020 0.980 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.515 -4.798 8.746 16.004 hybrid contribution 0.019 1.123 -0.688 1.317 sum -12.496 -3.675 8.058 15.316 Atomic orbital electron populations 1.22698 0.81562 1.02402 0.99770 1.87874 1.19262 1.28736 1.95395 1.22690 0.94806 0.84010 1.00032 1.21085 0.91661 0.95500 1.03766 1.21988 0.96141 0.95060 0.96547 1.21813 1.00330 0.99004 0.98534 1.23799 0.93838 1.00862 0.93859 1.68943 1.02901 1.41693 1.05182 1.20261 0.90791 0.89972 0.95788 1.21121 1.20921 1.19945 0.92107 0.91903 1.25007 0.95619 0.95192 0.98946 1.69959 1.24299 1.24082 1.35801 0.86484 0.77129 0.78690 0.85055 1.20754 1.21259 1.19745 1.23823 0.95226 0.97439 0.94658 0.94398 0.94174 0.89922 0.93264 0.93244 0.89709 0.91410 0.92475 0.92564 0.92556 0.90913 0.92164 0.95445 0.98033 0.92973 0.91990 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.39 -5.37 10.70 -35.23 -0.38 -5.75 16 3 C 0.06 0.78 5.30 37.16 0.20 0.98 16 4 C -0.08 -1.21 5.17 -26.73 -0.14 -1.35 16 5 C -0.10 -1.49 1.17 -153.97 -0.18 -1.67 16 6 C -0.14 -1.74 8.96 37.16 0.33 -1.41 16 7 C 0.01 0.11 6.85 -7.54 -0.05 0.06 16 8 N -0.46 -10.39 6.13 -246.03 -1.51 -11.89 16 9 C 0.16 4.24 4.57 -4.97 -0.02 4.22 16 10 C -0.50 -14.67 9.39 -34.44 -0.32 -15.00 16 11 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 12 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 13 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 14 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 18 C 0.02 0.34 6.82 -7.54 -0.05 0.29 16 19 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 20 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 21 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.05 0.56 6.35 -51.93 -0.33 0.23 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.08 1.43 7.93 -51.93 -0.41 1.02 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.06 0.73 7.90 -51.92 -0.41 0.32 16 27 H 0.06 0.62 5.96 -51.93 -0.31 0.31 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 30 H 0.06 1.09 7.87 -51.93 -0.41 0.69 16 31 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 32 H 0.00 0.05 7.30 -51.93 -0.38 -0.33 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.06 1.21 7.21 -51.93 -0.37 0.83 16 35 H 0.07 1.34 8.12 -51.93 -0.42 0.92 16 LS Contribution 285.47 15.07 4.30 4.30 Total: -1.00 -31.19 285.47 -7.06 -38.25 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -5.97 Total: -4.48 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 0.78 Total: -11.00 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.77 Total: -38.47 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.38 Total: -5.75 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.19 -7.06 -38.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308254640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.271 kcal (2) G-P(sol) polarization free energy of solvation -31.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds