Wall clock time and date at job start Sun Mar 29 2020 22:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00192 * 2 1 4 4 C 1.53000 * 109.47217 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47173 * 179.97438 * 4 3 2 6 6 C 1.53004 * 113.25266 * 47.05249 * 5 4 3 7 7 C 1.53514 * 114.17147 * 180.02562 * 5 4 3 8 8 N 1.47482 * 87.93039 * 87.81652 * 7 5 4 9 9 C 1.46901 * 110.99764 * 138.70591 * 8 7 5 10 10 C 1.50701 * 109.46921 * 169.99672 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47094 * 90.00289 * 14 12 10 16 16 H 1.48505 * 109.47195 * 210.00171 * 14 12 10 17 17 H 1.48493 * 109.47449 * 330.00136 * 14 12 10 18 18 C 1.47480 * 87.83699 * 27.01095 * 8 7 5 19 19 H 1.09002 * 109.46794 * 300.00029 * 1 2 3 20 20 H 1.08997 * 109.47266 * 59.99840 * 1 2 3 21 21 H 1.08998 * 109.47049 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47139 * 59.99996 * 3 2 1 23 23 H 1.08999 * 109.46977 * 300.00463 * 3 2 1 24 24 H 1.09003 * 109.47078 * 59.99948 * 4 3 2 25 25 H 1.08999 * 109.47516 * 300.00123 * 4 3 2 26 26 H 1.09007 * 109.46728 * 192.94959 * 6 5 4 27 27 H 1.08997 * 109.47170 * 312.94552 * 6 5 4 28 28 H 1.08994 * 109.47204 * 72.95564 * 6 5 4 29 29 H 1.08994 * 113.47382 * 333.04496 * 7 5 4 30 30 H 1.09003 * 113.47448 * 202.58404 * 7 5 4 31 31 H 1.09002 * 109.47401 * 49.99700 * 9 8 7 32 32 H 1.09001 * 109.46874 * 289.99713 * 9 8 7 33 33 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 34 34 H 1.08999 * 113.47664 * 87.75895 * 18 8 7 35 35 H 1.08994 * 113.47488 * 218.22090 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 6 3.5290 3.5239 1.0277 7 6 5.6930 2.5868 -0.0026 8 7 5.6386 2.5304 -1.4753 9 6 6.6462 3.4163 -2.0736 10 6 6.7305 3.1529 -3.5550 11 1 6.0984 2.4028 -4.0070 12 6 7.6137 3.8704 -4.3336 13 7 8.3830 4.7841 -3.7834 14 14 7.7176 3.5444 -6.1700 15 1 6.7589 4.4254 -6.8841 16 1 9.0963 3.8250 -6.6454 17 1 7.3803 2.1238 -6.4405 18 6 4.3266 3.1993 -1.3968 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 1.6887 1.8464 0.8900 23 1 1.6886 1.8463 -0.8899 24 1 3.8568 0.6438 -0.8909 25 1 3.8575 0.6435 0.8891 26 1 3.8460 4.5471 0.8253 27 1 2.4429 3.4604 0.9624 28 1 3.8504 3.2354 2.0284 29 1 6.1302 1.6970 0.4503 30 1 6.1248 3.5113 0.3809 31 1 7.6164 3.2252 -1.6149 32 1 6.3628 4.4552 -1.9047 33 1 9.0047 5.2886 -4.3311 34 1 4.3938 4.2871 -1.3854 35 1 3.6059 2.8285 -2.1256 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308254640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:20 Heat of formation + Delta-G solvation = -43.667173 kcal Electronic energy + Delta-G solvation = -14448.699351 eV Core-core repulsion = 12060.774212 eV Total energy + Delta-G solvation = -2387.925138 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.42183 -38.70509 -35.49850 -34.00753 -30.61079 -29.24613 -27.19425 -26.86852 -26.13652 -23.89446 -22.33828 -19.26461 -18.52707 -17.43071 -17.01778 -16.78718 -16.16351 -15.95908 -15.81442 -15.26860 -14.54716 -14.26847 -13.84997 -13.58170 -13.43526 -13.00340 -12.82235 -12.69431 -12.44897 -12.28864 -12.15021 -12.09923 -11.82602 -11.43318 -11.05490 -10.97911 -10.63375 -10.51408 -9.55717 -8.24589 -6.35221 1.37850 1.39775 1.51945 2.38056 2.80823 3.07199 3.36365 3.43102 3.89779 4.12881 4.27883 4.29992 4.52752 4.54536 4.56184 4.59586 4.67059 4.70206 4.73608 4.82147 4.88455 4.92256 4.99181 5.05756 5.16360 5.20968 5.28659 5.52703 5.59151 5.79504 6.09865 6.30248 6.49414 6.79407 7.34575 8.86620 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.040029 B = 0.006349 C = 0.005730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.321425 B = 4408.903900 C = 4885.342653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.065 3.935 4 C -0.080 4.080 5 C -0.067 4.067 6 C -0.135 4.135 7 C 0.001 3.999 8 N -0.488 5.488 9 C 0.174 3.826 10 C -0.527 4.527 11 H 0.056 0.944 12 C 0.002 3.998 13 N -0.934 5.934 14 Si 0.971 3.029 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.268 1.268 18 C 0.013 3.987 19 H 0.055 0.945 20 H 0.045 0.955 21 H 0.095 0.905 22 H 0.074 0.926 23 H 0.047 0.953 24 H 0.055 0.945 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.058 0.942 31 H -0.002 1.002 32 H -0.021 1.021 33 H 0.266 0.734 34 H 0.054 0.946 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.478 -4.527 9.552 17.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.340 6.340 3 C -0.011 4.011 4 C -0.117 4.117 5 C -0.068 4.068 6 C -0.192 4.192 7 C -0.129 4.129 8 N -0.210 5.210 9 C 0.047 3.953 10 C -0.566 4.566 11 H 0.074 0.926 12 C -0.196 4.196 13 N -0.575 5.575 14 Si 0.795 3.205 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.192 1.192 18 C -0.117 4.117 19 H 0.073 0.927 20 H 0.063 0.937 21 H 0.114 0.886 22 H 0.092 0.908 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.098 0.902 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.016 0.984 32 H -0.003 1.003 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.117 -5.195 9.128 17.596 hybrid contribution 0.490 1.215 -0.758 1.514 sum -13.627 -3.981 8.370 16.480 Atomic orbital electron populations 1.22920 0.79564 1.03734 1.00854 1.87829 1.21493 1.29045 1.95611 1.22622 0.93205 0.84194 1.01058 1.21020 0.93392 0.94410 1.02921 1.21829 0.94123 0.96010 0.94834 1.21804 1.01508 0.97730 0.98197 1.23910 0.96614 1.01197 0.91138 1.68870 1.03262 1.40973 1.07928 1.19922 0.90752 0.89507 0.95125 1.21423 1.21379 1.20198 0.93552 0.92621 1.25941 0.94883 0.94640 1.04166 1.70075 1.24760 1.24792 1.37837 0.85355 0.77621 0.78816 0.78668 1.19539 1.20328 1.19209 1.23876 0.93394 0.97008 0.97387 0.92670 0.93678 0.88620 0.90844 0.93494 0.92587 0.90237 0.92894 0.90293 0.90581 0.90032 0.92338 0.98392 1.00279 0.92543 0.92769 0.91175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.67 16 2 O -0.42 -10.58 10.70 -148.98 -1.59 -12.17 16 3 C 0.07 1.52 5.30 71.98 0.38 1.90 16 4 C -0.08 -2.21 5.17 30.59 0.16 -2.06 16 5 C -0.07 -1.99 1.17 -51.84 -0.06 -2.05 16 6 C -0.14 -2.98 8.96 71.98 0.64 -2.34 16 7 C 0.00 0.02 6.85 83.58 0.57 0.59 16 8 N -0.49 -22.40 6.13 -932.30 -5.71 -28.11 16 9 C 0.17 9.73 4.57 85.56 0.39 10.12 16 10 C -0.53 -31.62 9.39 25.60 0.24 -31.38 16 11 H 0.06 3.34 7.81 -2.91 -0.02 3.31 16 12 C 0.00 0.10 5.46 84.66 0.46 0.56 16 13 N -0.93 -57.57 13.29 21.45 0.28 -57.29 16 14 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 15 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 18 C 0.01 0.48 6.82 83.58 0.57 1.05 16 19 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 20 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 21 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.07 1.36 6.35 -2.39 -0.02 1.35 16 23 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.06 1.88 7.93 -2.39 -0.02 1.86 16 25 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.05 1.24 7.90 -2.38 -0.02 1.22 16 27 H 0.08 1.42 5.96 -2.39 -0.01 1.40 16 28 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.08 2.79 8.11 -2.39 -0.02 2.77 16 30 H 0.06 2.15 7.87 -2.39 -0.02 2.13 16 31 H 0.00 -0.12 8.08 -2.39 -0.02 -0.14 16 32 H -0.02 -1.21 7.30 -2.39 -0.02 -1.23 16 33 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 34 H 0.05 2.15 7.21 -2.39 -0.02 2.13 16 35 H 0.07 2.65 8.12 -2.39 -0.02 2.63 16 Total: -1.00 -68.16 285.47 0.64 -67.51 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: 1.03 Total: 4.27 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 4.61 Total: -21.92 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -5.43 Total: -85.40 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -1.59 Total: -12.17 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -68.16 0.64 -67.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308254640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.845 kcal (2) G-P(sol) polarization free energy of solvation -68.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds