Wall clock time and date at job start Sun Mar 29 2020 22:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42904 * 114.00051 * 2 1 4 4 C 1.52997 * 109.47346 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.86956 * 306.01618 * 4 3 2 6 6 C 1.54321 * 109.88204 * 185.00280 * 4 3 2 7 7 C 1.55157 * 103.10033 * 218.29831 * 6 4 3 8 8 C 1.55392 * 101.36576 * 35.49711 * 7 6 4 9 9 N 1.47019 * 109.88144 * 67.19030 * 4 3 2 10 10 C 1.34777 * 125.65068 * 298.32474 * 9 4 3 11 11 O 1.21692 * 119.99996 * 359.97438 * 10 9 4 12 12 C 1.46375 * 120.00030 * 179.97438 * 10 9 4 13 13 H 1.08004 * 119.99974 * 359.97438 * 12 10 9 14 14 C 1.40049 * 120.00173 * 179.97438 * 12 10 9 15 15 N 1.30677 * 119.99559 * 0.02562 * 14 12 10 16 16 Si 1.86791 * 120.00299 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47289 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47511 * 119.99909 * 16 14 12 19 19 H 1.48502 * 109.47309 * 240.00563 * 16 14 12 20 20 H 1.08999 * 109.47248 * 59.99678 * 1 2 3 21 21 H 1.08998 * 109.46672 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46419 * 299.99698 * 1 2 3 23 23 H 1.09002 * 109.46769 * 59.99696 * 3 2 1 24 24 H 1.09001 * 109.47240 * 300.00595 * 3 2 1 25 25 H 1.09002 * 110.72109 * 336.75211 * 6 4 3 26 26 H 1.09003 * 110.72356 * 99.85036 * 6 4 3 27 27 H 1.09004 * 111.00537 * 153.66574 * 7 6 4 28 28 H 1.09001 * 111.00741 * 277.51995 * 7 6 4 29 29 H 1.08999 * 110.34334 * 204.17153 * 8 7 6 30 30 H 1.08998 * 110.44545 * 81.91304 * 8 7 6 31 31 H 0.97005 * 119.99338 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8576 0.5544 0.8283 6 6 4.1729 2.5845 0.1259 7 6 5.4042 2.4965 -0.8140 8 6 4.8556 1.5940 -1.9538 9 7 3.9911 0.6112 -1.2754 10 6 3.6719 -0.6109 -1.7456 11 8 2.9473 -1.3423 -1.0968 12 6 4.1969 -1.0585 -3.0366 13 1 4.8397 -0.4092 -3.6125 14 6 3.8657 -2.3286 -3.5249 15 7 3.0876 -3.1139 -2.8282 16 14 4.5362 -2.9000 -5.1721 17 1 5.3869 -1.8328 -5.7574 18 1 5.3480 -4.1281 -4.9770 19 1 3.4073 -3.1935 -6.0912 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3632 0.5138 0.8901 23 1 1.6886 1.8464 0.8900 24 1 1.6886 1.8465 -0.8899 25 1 3.4817 3.3552 -0.2151 26 1 4.4845 2.7750 1.1529 27 1 5.6801 3.4818 -1.1898 28 1 6.2468 2.0220 -0.3108 29 1 5.6752 1.0891 -2.4651 30 1 4.2748 2.1854 -2.6615 31 1 2.8585 -3.9938 -3.1664 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308254960.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:23 Heat of formation + Delta-G solvation = -76.669620 kcal Electronic energy + Delta-G solvation = -14971.058286 eV Core-core repulsion = 12445.868960 eV Total energy + Delta-G solvation = -2525.189326 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.67921 -36.44398 -35.38495 -32.33575 -30.35899 -29.84592 -26.08255 -25.98368 -24.04363 -21.74513 -20.62933 -18.56866 -16.49663 -15.91663 -15.45128 -15.31997 -14.64200 -14.26697 -13.82027 -13.02385 -12.73178 -12.50596 -12.30305 -11.93121 -11.46104 -11.16768 -10.92285 -10.75719 -10.67993 -10.57818 -10.46199 -10.23523 -10.13425 -9.93744 -8.79263 -8.72121 -7.30317 -6.98201 -6.04514 -4.48926 3.18574 3.26416 3.30662 4.17068 4.51861 4.68948 4.74777 5.10841 5.30065 5.40621 5.72694 5.77851 5.88186 5.93962 5.96517 5.99427 6.02342 6.12089 6.20227 6.27769 6.36566 6.54823 6.70578 6.81225 7.51791 7.55582 8.09727 8.26872 8.56693 9.15670 9.70880 10.74883 10.99989 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.029314 B = 0.011905 C = 0.008914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.948221 B = 2351.337175 C = 3140.332796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.329 6.329 3 C 0.055 3.945 4 C 0.144 3.856 5 H 0.063 0.937 6 C -0.124 4.124 7 C -0.134 4.134 8 C 0.117 3.883 9 N -0.639 5.639 10 C 0.566 3.434 11 O -0.533 6.533 12 C -0.542 4.542 13 H 0.065 0.935 14 C 0.087 3.913 15 N -0.769 5.769 16 Si 0.903 3.097 17 H -0.265 1.265 18 H -0.277 1.277 19 H -0.278 1.278 20 H 0.027 0.973 21 H 0.079 0.921 22 H 0.022 0.978 23 H 0.033 0.967 24 H 0.037 0.963 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.775 10.055 2.791 10.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.246 6.246 3 C -0.024 4.024 4 C 0.039 3.961 5 H 0.081 0.919 6 C -0.162 4.162 7 C -0.172 4.172 8 C -0.008 4.008 9 N -0.381 5.381 10 C 0.370 3.630 11 O -0.411 6.411 12 C -0.579 4.579 13 H 0.084 0.916 14 C -0.131 4.131 15 N -0.399 5.399 16 Si 0.728 3.272 17 H -0.189 1.189 18 H -0.203 1.203 19 H -0.203 1.203 20 H 0.046 0.954 21 H 0.098 0.902 22 H 0.041 0.959 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.346 9.162 3.136 9.690 hybrid contribution 0.071 0.106 -0.900 0.909 sum 0.417 9.268 2.236 9.543 Atomic orbital electron populations 1.22600 0.83936 1.01974 0.97804 1.88571 1.16776 1.24598 1.94655 1.22911 0.95053 0.86389 0.98007 1.21155 0.91302 0.93151 0.90539 0.91886 1.22551 0.97498 0.96228 0.99908 1.22873 0.97377 0.99656 0.97315 1.21959 0.94157 0.90611 0.94078 1.48941 1.52999 1.16814 1.19298 1.18051 0.80879 0.77457 0.86607 1.90690 1.38602 1.51910 1.59923 1.20931 1.32317 1.01024 1.03608 0.91648 1.25675 0.93585 0.96221 0.97640 1.70051 1.27117 1.07210 1.35491 0.86395 0.79155 0.79030 0.82619 1.18908 1.20289 1.20324 0.95396 0.90214 0.95943 0.94862 0.94427 0.91333 0.91052 0.91084 0.91162 0.91309 0.93858 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 101.05 1.11 1.77 16 2 O -0.33 -7.91 7.42 -59.28 -0.44 -8.35 16 3 C 0.06 1.09 5.35 37.16 0.20 1.29 16 4 C 0.14 2.90 3.29 -66.96 -0.22 2.68 16 5 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 6 C -0.12 -1.80 6.46 -24.90 -0.16 -1.96 16 7 C -0.13 -1.93 7.12 -24.32 -0.17 -2.11 16 8 C 0.12 2.21 6.53 -2.26 -0.01 2.20 16 9 N -0.64 -15.22 3.07 -164.36 -0.50 -15.73 16 10 C 0.57 16.71 7.53 -12.99 -0.10 16.61 16 11 O -0.53 -17.53 12.32 -18.85 -0.23 -17.76 16 12 C -0.54 -15.79 8.98 -35.63 -0.32 -16.11 16 13 H 0.07 1.77 6.64 -52.48 -0.35 1.42 16 14 C 0.09 2.51 5.50 -17.36 -0.10 2.41 16 15 N -0.77 -23.60 11.83 55.55 0.66 -22.95 16 16 Si 0.90 20.72 29.56 -169.99 -5.02 15.70 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 21 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 22 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 0.90 7.85 -51.93 -0.41 0.49 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.34 7.14 -51.93 -0.37 0.97 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.26 7.39 8.29 -40.82 -0.34 7.05 16 LS Contribution 258.65 15.07 3.90 3.90 Total: -1.00 -35.43 258.65 -5.91 -41.33 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -4.49 Total: -2.93 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 0.23 Total: 6.78 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.15 Total: -38.68 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.67 Total: -26.11 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -35.43 -5.91 -41.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308254960.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.335 kcal (2) G-P(sol) polarization free energy of solvation -35.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds