Wall clock time and date at job start Sun Mar 29 2020 22:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42904 * 114.00051 * 2 1 4 4 C 1.52997 * 109.47346 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.86956 * 306.01618 * 4 3 2 6 6 C 1.54321 * 109.88204 * 185.00280 * 4 3 2 7 7 C 1.55157 * 103.10033 * 218.29831 * 6 4 3 8 8 C 1.55392 * 101.36576 * 35.49711 * 7 6 4 9 9 N 1.47019 * 109.88144 * 67.19030 * 4 3 2 10 10 C 1.34777 * 125.65068 * 298.32474 * 9 4 3 11 11 O 1.21692 * 119.99996 * 359.97438 * 10 9 4 12 12 C 1.46375 * 120.00030 * 179.97438 * 10 9 4 13 13 H 1.08004 * 119.99974 * 359.97438 * 12 10 9 14 14 C 1.40049 * 120.00173 * 179.97438 * 12 10 9 15 15 N 1.30677 * 119.99559 * 0.02562 * 14 12 10 16 16 Si 1.86791 * 120.00299 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47289 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47511 * 119.99909 * 16 14 12 19 19 H 1.48502 * 109.47309 * 240.00563 * 16 14 12 20 20 H 1.08999 * 109.47248 * 59.99678 * 1 2 3 21 21 H 1.08998 * 109.46672 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46419 * 299.99698 * 1 2 3 23 23 H 1.09002 * 109.46769 * 59.99696 * 3 2 1 24 24 H 1.09001 * 109.47240 * 300.00595 * 3 2 1 25 25 H 1.09002 * 110.72109 * 336.75211 * 6 4 3 26 26 H 1.09003 * 110.72356 * 99.85036 * 6 4 3 27 27 H 1.09004 * 111.00537 * 153.66574 * 7 6 4 28 28 H 1.09001 * 111.00741 * 277.51995 * 7 6 4 29 29 H 1.08999 * 110.34334 * 204.17153 * 8 7 6 30 30 H 1.08998 * 110.44545 * 81.91304 * 8 7 6 31 31 H 0.97005 * 119.99338 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8576 0.5544 0.8283 6 6 4.1729 2.5845 0.1259 7 6 5.4042 2.4965 -0.8140 8 6 4.8556 1.5940 -1.9538 9 7 3.9911 0.6112 -1.2754 10 6 3.6719 -0.6109 -1.7456 11 8 2.9473 -1.3423 -1.0968 12 6 4.1969 -1.0585 -3.0366 13 1 4.8397 -0.4092 -3.6125 14 6 3.8657 -2.3286 -3.5249 15 7 3.0876 -3.1139 -2.8282 16 14 4.5362 -2.9000 -5.1721 17 1 5.3869 -1.8328 -5.7574 18 1 5.3480 -4.1281 -4.9770 19 1 3.4073 -3.1935 -6.0912 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3632 0.5138 0.8901 23 1 1.6886 1.8464 0.8900 24 1 1.6886 1.8465 -0.8899 25 1 3.4817 3.3552 -0.2151 26 1 4.4845 2.7750 1.1529 27 1 5.6801 3.4818 -1.1898 28 1 6.2468 2.0220 -0.3108 29 1 5.6752 1.0891 -2.4651 30 1 4.2748 2.1854 -2.6615 31 1 2.8585 -3.9938 -3.1664 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308254960.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:22 Heat of formation + Delta-G solvation = -101.869954 kcal Electronic energy + Delta-G solvation = -14972.151055 eV Core-core repulsion = 12445.868960 eV Total energy + Delta-G solvation = -2526.282095 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.34816 -38.18234 -37.31568 -34.52782 -32.07576 -31.33763 -28.16074 -27.56232 -25.58162 -23.52038 -22.02532 -20.39168 -18.40685 -17.64952 -17.28363 -17.03527 -16.20337 -16.04731 -15.54007 -14.75660 -14.39631 -14.03733 -13.85180 -13.51987 -13.25887 -12.97934 -12.71919 -12.55794 -12.33853 -12.01929 -11.97823 -11.86732 -11.75867 -11.49802 -10.88610 -10.38323 -9.53748 -8.88543 -8.19456 -6.74836 1.38202 1.39262 1.55797 2.25771 2.58076 2.95103 3.10414 3.71775 3.84269 4.00224 4.15659 4.31447 4.34082 4.40404 4.51317 4.53048 4.73193 4.78319 4.81784 4.97152 5.05993 5.15261 5.26736 5.38570 5.43386 5.77206 6.14400 6.52824 6.61521 6.95085 7.67108 8.62544 8.84336 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.029314 B = 0.011905 C = 0.008914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.948221 B = 2351.337175 C = 3140.332796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.053 3.947 4 C 0.130 3.870 5 H 0.035 0.965 6 C -0.108 4.108 7 C -0.118 4.118 8 C 0.105 3.895 9 N -0.650 5.650 10 C 0.547 3.453 11 O -0.582 6.582 12 C -0.571 4.571 13 H 0.078 0.922 14 C 0.029 3.971 15 N -0.823 5.823 16 Si 0.992 3.008 17 H -0.249 1.249 18 H -0.269 1.269 19 H -0.269 1.269 20 H 0.031 0.969 21 H 0.067 0.933 22 H 0.060 0.940 23 H 0.073 0.927 24 H 0.034 0.966 25 H 0.091 0.909 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.805 12.342 2.221 12.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.025 4.025 4 C 0.026 3.974 5 H 0.053 0.947 6 C -0.146 4.146 7 C -0.156 4.156 8 C -0.018 4.018 9 N -0.389 5.389 10 C 0.351 3.649 11 O -0.464 6.464 12 C -0.608 4.608 13 H 0.097 0.903 14 C -0.185 4.185 15 N -0.453 5.453 16 Si 0.812 3.188 17 H -0.172 1.172 18 H -0.194 1.194 19 H -0.194 1.194 20 H 0.050 0.950 21 H 0.086 0.914 22 H 0.078 0.922 23 H 0.091 0.909 24 H 0.053 0.947 25 H 0.110 0.890 26 H 0.120 0.880 27 H 0.131 0.869 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.400 11.522 2.579 11.890 hybrid contribution -0.268 -0.547 -0.655 0.895 sum 1.132 10.975 1.924 11.200 Atomic orbital electron populations 1.22699 0.82119 1.01926 0.99723 1.88509 1.19176 1.27341 1.95056 1.23058 0.94637 0.85224 0.99556 1.21539 0.92196 0.95877 0.87817 0.94697 1.22567 0.97329 0.92716 1.01952 1.22847 0.97055 1.00501 0.95190 1.22238 0.93309 0.90356 0.95897 1.48722 1.53119 1.16235 1.20858 1.18366 0.80622 0.79024 0.86917 1.90641 1.40469 1.54164 1.61147 1.21424 1.32970 1.02105 1.04282 0.90342 1.26896 0.93352 0.95930 1.02354 1.70230 1.28900 1.07927 1.38252 0.85059 0.78634 0.78789 0.76322 1.17201 1.19385 1.19439 0.95035 0.91436 0.92190 0.90943 0.94735 0.89011 0.87996 0.86865 0.91046 0.92548 0.93031 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.23 11.01 113.37 1.25 2.48 16 2 O -0.38 -18.88 7.42 -125.99 -0.93 -19.81 16 3 C 0.05 2.07 5.35 71.98 0.39 2.45 16 4 C 0.13 5.18 3.29 45.34 0.15 5.33 16 5 H 0.03 1.55 8.14 -2.39 -0.02 1.54 16 6 C -0.11 -2.73 6.46 31.78 0.21 -2.53 16 7 C -0.12 -2.97 7.12 32.16 0.23 -2.74 16 8 C 0.11 3.86 6.53 87.02 0.57 4.43 16 9 N -0.65 -31.30 3.07 -792.13 -2.43 -33.73 16 10 C 0.55 33.52 7.53 86.36 0.65 34.17 16 11 O -0.58 -40.26 12.32 18.67 0.23 -40.03 16 12 C -0.57 -34.09 8.98 24.83 0.22 -33.87 16 13 H 0.08 4.29 6.64 -2.91 -0.02 4.27 16 14 C 0.03 1.67 5.50 85.30 0.47 2.14 16 15 N -0.82 -52.40 11.83 21.84 0.26 -52.15 16 16 Si 0.99 42.96 29.56 68.60 2.03 44.99 16 17 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 18 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 20 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 21 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 22 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.09 1.95 7.85 -2.39 -0.02 1.93 16 26 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 2.16 7.14 -2.39 -0.02 2.15 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.27 15.62 8.29 -92.70 -0.77 14.85 16 Total: -1.00 -82.18 258.65 4.38 -77.80 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 1.10 Total: 11.06 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 4.13 Total: 11.87 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -2.17 Total: -85.88 kcal Atomic # 8 Polarization: -59.14 SS G_CDS: -0.70 Total: -59.84 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -82.18 4.38 -77.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308254960.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.071 kcal (2) G-P(sol) polarization free energy of solvation -82.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds