Wall clock time and date at job start Sun Mar 29 2020 22:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00135 * 2 1 4 4 H 1.09004 * 109.47196 * 24.37115 * 3 2 1 5 5 C 1.50702 * 109.47066 * 144.36783 * 3 2 1 6 6 O 1.21289 * 120.00267 * 9.04897 * 5 3 2 7 7 N 1.34775 * 120.00034 * 189.05030 * 5 3 2 8 8 C 1.46498 * 119.99992 * 5.20263 * 7 5 3 9 9 C 1.37099 * 119.99934 * 185.47850 * 7 5 3 10 10 H 1.08001 * 120.00227 * 8.91034 * 9 7 5 11 11 C 1.38953 * 120.00112 * 188.91427 * 9 7 5 12 12 N 1.31418 * 119.99836 * 10.33548 * 11 9 7 13 13 Si 1.86793 * 120.00117 * 190.34345 * 11 9 7 14 14 H 1.48499 * 109.47280 * 59.99475 * 13 11 9 15 15 H 1.48500 * 109.47176 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47356 * 299.99673 * 13 11 9 17 17 C 1.53000 * 109.47658 * 264.36820 * 3 2 1 18 18 C 1.52997 * 117.49311 * 14.05820 * 17 3 2 19 19 C 1.53001 * 117.49602 * 305.40412 * 17 3 2 20 20 H 1.08997 * 109.47073 * 183.75381 * 1 2 3 21 21 H 1.08999 * 109.47195 * 303.75466 * 1 2 3 22 22 H 1.09002 * 109.47334 * 63.75317 * 1 2 3 23 23 H 1.08997 * 109.47525 * 355.10134 * 8 7 5 24 24 H 1.09000 * 109.47125 * 115.10181 * 8 7 5 25 25 H 1.09003 * 109.47332 * 235.09767 * 8 7 5 26 26 H 0.97003 * 119.99944 * 179.97438 * 12 11 9 27 27 H 1.08994 * 115.55449 * 159.72532 * 17 3 2 28 28 H 1.08998 * 117.50496 * 359.97438 * 18 17 3 29 29 H 1.09001 * 117.49766 * 145.02137 * 18 17 3 30 30 H 1.09001 * 117.49264 * 214.97763 * 19 17 3 31 31 H 1.08998 * 117.50209 * 359.97090 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3028 2.0181 0.4241 5 6 3.2695 1.2946 0.8277 6 8 3.7232 0.2433 1.2280 7 7 3.8917 2.4530 1.1233 8 6 3.2845 3.7295 0.7384 9 6 5.0955 2.4367 1.7791 10 1 5.6148 1.5020 1.9315 11 6 5.6475 3.6226 2.2479 12 7 4.9329 4.7255 2.2469 13 14 7.4054 3.6492 2.8791 14 1 8.3275 3.2286 1.7938 15 1 7.7529 5.0246 3.3180 16 1 7.5334 2.7157 4.0269 17 6 2.3470 1.7139 -1.4355 18 6 1.7373 0.8845 -2.5674 19 6 3.2302 0.7670 -2.2506 20 1 -0.3633 -1.0254 0.0673 21 1 -0.3633 0.5710 0.8544 22 1 -0.3634 0.4545 -0.9217 23 1 2.3854 3.5419 0.1515 24 1 3.0226 4.2921 1.6345 25 1 3.9938 4.3043 0.1428 26 1 5.3181 5.5533 2.5745 27 1 2.4669 2.7840 -1.6040 28 1 1.0966 0.0476 -2.2894 29 1 1.4564 1.4089 -3.4807 30 1 3.9310 1.2144 -2.9555 31 1 3.5717 -0.1466 -1.7640 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308256753.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:59 Heat of formation + Delta-G solvation = -33.810764 kcal Electronic energy + Delta-G solvation = -14915.247335 eV Core-core repulsion = 12391.916508 eV Total energy + Delta-G solvation = -2523.330827 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.35999 -37.20603 -35.44806 -34.53664 -31.58854 -28.59780 -26.42178 -25.51951 -24.10082 -22.00692 -20.71003 -18.98600 -16.90265 -16.53268 -16.14208 -15.45127 -14.78018 -14.30331 -13.96128 -13.68222 -13.45859 -12.73591 -12.21027 -12.04122 -11.47512 -11.22826 -11.05520 -10.98949 -10.92749 -10.70299 -10.38918 -10.18308 -10.02535 -9.93398 -9.35067 -9.03667 -8.12315 -7.76780 -6.20116 -3.78302 3.20560 3.25901 3.30161 3.83639 3.90382 4.17011 4.27906 5.01055 5.10398 5.15561 5.33771 5.41431 5.53619 5.57097 5.75721 5.82201 5.84198 5.95573 6.03496 6.25044 6.32574 6.45692 6.62117 6.99402 7.40279 7.49320 7.61157 8.12182 8.54443 9.23560 9.47616 10.02927 10.74114 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045741 B = 0.008949 C = 0.008780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.992383 B = 3127.932366 C = 3188.466550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.111 3.889 4 H 0.075 0.925 5 C 0.448 3.552 6 O -0.576 6.576 7 N -0.445 5.445 8 C 0.105 3.895 9 C -0.297 4.297 10 H 0.102 0.898 11 C 0.026 3.974 12 N -0.889 5.889 13 Si 0.931 3.069 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.273 1.273 17 C -0.173 4.173 18 C -0.177 4.177 19 C -0.161 4.161 20 H 0.082 0.918 21 H 0.039 0.961 22 H 0.040 0.960 23 H 0.025 0.975 24 H 0.086 0.914 25 H 0.053 0.947 26 H 0.266 0.734 27 H 0.114 0.886 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.212 -0.888 -6.863 9.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.273 6.273 3 C 0.049 3.951 4 H 0.093 0.907 5 C 0.235 3.765 6 O -0.460 6.460 7 N -0.165 5.165 8 C -0.038 4.038 9 C -0.425 4.425 10 H 0.120 0.880 11 C -0.176 4.176 12 N -0.530 5.530 13 Si 0.757 3.243 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.198 1.198 17 C -0.191 4.191 18 C -0.214 4.214 19 C -0.198 4.198 20 H 0.101 0.899 21 H 0.058 0.942 22 H 0.059 0.941 23 H 0.044 0.956 24 H 0.104 0.896 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.132 0.868 28 H 0.117 0.883 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.830 -1.359 -6.591 9.588 hybrid contribution 0.570 0.642 0.261 0.897 sum -6.260 -0.717 -6.330 8.931 Atomic orbital electron populations 1.22863 0.82113 1.02325 0.99721 1.88003 1.18377 1.26353 1.94587 1.21383 0.95499 0.84908 0.93293 0.90693 1.19572 0.86454 0.84748 0.85732 1.90517 1.67349 1.30952 1.57138 1.43561 1.19246 1.04132 1.49550 1.21896 0.94716 0.86211 1.00991 1.19721 0.94819 0.95440 1.32493 0.87993 1.25283 1.00104 0.95053 0.97142 1.70053 1.35810 1.00337 1.46846 0.85923 0.81952 0.77144 0.79239 1.19972 1.20953 1.19848 1.22787 1.06664 0.97897 0.91797 1.22954 0.97196 1.02903 0.98350 1.22825 0.92652 1.01952 1.02361 0.89915 0.94221 0.94149 0.95648 0.89602 0.92789 0.92370 0.86793 0.88343 0.89416 0.89261 0.88145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.14 101.05 1.02 1.40 16 2 O -0.36 -6.98 8.68 -54.98 -0.48 -7.46 16 3 C 0.11 2.22 2.11 -27.88 -0.06 2.16 16 4 H 0.08 1.37 6.67 -51.93 -0.35 1.02 16 5 C 0.45 11.52 6.76 -10.99 -0.07 11.44 16 6 O -0.58 -17.10 16.14 -14.19 -0.23 -17.33 16 7 N -0.44 -11.72 3.03 -122.19 -0.37 -12.09 16 8 C 0.11 2.40 8.26 59.85 0.49 2.89 16 9 C -0.30 -8.47 9.51 -14.93 -0.14 -8.61 16 10 H 0.10 3.05 7.25 -52.49 -0.38 2.67 16 11 C 0.03 0.68 5.35 -17.46 -0.09 0.59 16 12 N -0.89 -23.58 9.80 55.50 0.54 -23.04 16 13 Si 0.93 21.11 29.56 -169.99 -5.03 16.09 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 C -0.17 -2.99 5.05 -90.62 -0.46 -3.45 16 18 C -0.18 -2.56 9.48 -26.70 -0.25 -2.81 16 19 C -0.16 -2.76 9.88 -26.70 -0.26 -3.03 16 20 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 21 H 0.04 0.52 8.01 -51.93 -0.42 0.11 16 22 H 0.04 0.48 7.01 -51.93 -0.36 0.12 16 23 H 0.03 0.48 4.37 -51.93 -0.23 0.25 16 24 H 0.09 2.09 6.56 -51.93 -0.34 1.75 16 25 H 0.05 1.26 7.65 -51.93 -0.40 0.87 16 26 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 27 H 0.11 1.86 6.84 -51.93 -0.36 1.50 16 28 H 0.10 1.41 5.89 -51.93 -0.31 1.11 16 29 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 LS Contribution 256.22 15.07 3.86 3.86 Total: -1.00 -31.88 256.22 -5.48 -37.36 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -3.96 Total: 2.01 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 0.18 Total: 0.59 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.17 Total: -35.13 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.71 Total: -24.78 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.88 -5.48 -37.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308256753.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.546 kcal (2) G-P(sol) polarization free energy of solvation -31.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds