Wall clock time and date at job start Sun Mar 29 2020 22:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00135 * 2 1 4 4 H 1.09004 * 109.47196 * 24.37115 * 3 2 1 5 5 C 1.50702 * 109.47066 * 144.36783 * 3 2 1 6 6 O 1.21289 * 120.00267 * 9.04897 * 5 3 2 7 7 N 1.34775 * 120.00034 * 189.05030 * 5 3 2 8 8 C 1.46498 * 119.99992 * 5.20263 * 7 5 3 9 9 C 1.37099 * 119.99934 * 185.47850 * 7 5 3 10 10 H 1.08001 * 120.00227 * 8.91034 * 9 7 5 11 11 C 1.38953 * 120.00112 * 188.91427 * 9 7 5 12 12 N 1.31418 * 119.99836 * 10.33548 * 11 9 7 13 13 Si 1.86793 * 120.00117 * 190.34345 * 11 9 7 14 14 H 1.48499 * 109.47280 * 59.99475 * 13 11 9 15 15 H 1.48500 * 109.47176 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47356 * 299.99673 * 13 11 9 17 17 C 1.53000 * 109.47658 * 264.36820 * 3 2 1 18 18 C 1.52997 * 117.49311 * 14.05820 * 17 3 2 19 19 C 1.53001 * 117.49602 * 305.40412 * 17 3 2 20 20 H 1.08997 * 109.47073 * 183.75381 * 1 2 3 21 21 H 1.08999 * 109.47195 * 303.75466 * 1 2 3 22 22 H 1.09002 * 109.47334 * 63.75317 * 1 2 3 23 23 H 1.08997 * 109.47525 * 355.10134 * 8 7 5 24 24 H 1.09000 * 109.47125 * 115.10181 * 8 7 5 25 25 H 1.09003 * 109.47332 * 235.09767 * 8 7 5 26 26 H 0.97003 * 119.99944 * 179.97438 * 12 11 9 27 27 H 1.08994 * 115.55449 * 159.72532 * 17 3 2 28 28 H 1.08998 * 117.50496 * 359.97438 * 18 17 3 29 29 H 1.09001 * 117.49766 * 145.02137 * 18 17 3 30 30 H 1.09001 * 117.49264 * 214.97763 * 19 17 3 31 31 H 1.08998 * 117.50209 * 359.97090 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3028 2.0181 0.4241 5 6 3.2695 1.2946 0.8277 6 8 3.7232 0.2433 1.2280 7 7 3.8917 2.4530 1.1233 8 6 3.2845 3.7295 0.7384 9 6 5.0955 2.4367 1.7791 10 1 5.6148 1.5020 1.9315 11 6 5.6475 3.6226 2.2479 12 7 4.9329 4.7255 2.2469 13 14 7.4054 3.6492 2.8791 14 1 8.3275 3.2286 1.7938 15 1 7.7529 5.0246 3.3180 16 1 7.5334 2.7157 4.0269 17 6 2.3470 1.7139 -1.4355 18 6 1.7373 0.8845 -2.5674 19 6 3.2302 0.7670 -2.2506 20 1 -0.3633 -1.0254 0.0673 21 1 -0.3633 0.5710 0.8544 22 1 -0.3634 0.4545 -0.9217 23 1 2.3854 3.5419 0.1515 24 1 3.0226 4.2921 1.6345 25 1 3.9938 4.3043 0.1428 26 1 5.3181 5.5533 2.5745 27 1 2.4669 2.7840 -1.6040 28 1 1.0966 0.0476 -2.2894 29 1 1.4564 1.4089 -3.4807 30 1 3.9310 1.2144 -2.9555 31 1 3.5717 -0.1466 -1.7640 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308256753.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:58 Heat of formation + Delta-G solvation = -54.678917 kcal Electronic energy + Delta-G solvation = -14916.152246 eV Core-core repulsion = 12391.916508 eV Total energy + Delta-G solvation = -2524.235738 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.03428 -38.91484 -36.87930 -36.49795 -33.65155 -30.18776 -28.15693 -26.97787 -26.01508 -23.26901 -22.22079 -20.73009 -18.96844 -18.11370 -17.70420 -16.99490 -16.66868 -15.82357 -15.74830 -15.32383 -15.05324 -14.26220 -13.91763 -13.58125 -13.38083 -12.99206 -12.80189 -12.50423 -12.33134 -12.27348 -12.16614 -12.05958 -11.45565 -11.27796 -11.08111 -10.69596 -10.04209 -9.83325 -8.24692 -5.93176 1.37351 1.39713 1.50374 1.96365 2.19816 2.58355 2.83647 3.10670 3.42117 3.67635 3.95880 3.97539 4.22666 4.31012 4.45396 4.58392 4.59616 4.66441 4.78668 4.85321 4.99240 5.10924 5.20955 5.32685 5.42394 5.51699 5.96174 6.22789 6.51708 7.16552 7.46207 8.01836 8.66217 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045741 B = 0.008949 C = 0.008780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.992383 B = 3127.932366 C = 3188.466550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.388 6.388 3 C 0.122 3.878 4 H 0.096 0.904 5 C 0.433 3.567 6 O -0.631 6.631 7 N -0.456 5.456 8 C 0.116 3.884 9 C -0.343 4.343 10 H 0.071 0.929 11 C -0.002 4.002 12 N -0.894 5.894 13 Si 0.991 3.009 14 H -0.271 1.271 15 H -0.265 1.265 16 H -0.277 1.277 17 C -0.187 4.187 18 C -0.136 4.136 19 C -0.184 4.184 20 H 0.100 0.900 21 H 0.045 0.955 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.273 0.727 27 H 0.128 0.872 28 H 0.101 0.899 29 H 0.124 0.876 30 H 0.103 0.897 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.370 0.329 -8.088 11.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.306 6.306 3 C 0.060 3.940 4 H 0.113 0.887 5 C 0.222 3.778 6 O -0.519 6.519 7 N -0.176 5.176 8 C -0.027 4.027 9 C -0.470 4.470 10 H 0.089 0.911 11 C -0.204 4.204 12 N -0.534 5.534 13 Si 0.815 3.185 14 H -0.197 1.197 15 H -0.189 1.189 16 H -0.202 1.202 17 C -0.206 4.206 18 C -0.172 4.172 19 C -0.221 4.221 20 H 0.119 0.881 21 H 0.064 0.936 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.146 0.854 28 H 0.120 0.880 29 H 0.143 0.857 30 H 0.121 0.879 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.025 -0.103 -7.830 11.212 hybrid contribution 0.886 0.239 0.672 1.137 sum -7.139 0.136 -7.158 10.110 Atomic orbital electron populations 1.23169 0.79132 1.04067 1.01401 1.87969 1.21611 1.26202 1.94820 1.21180 0.92870 0.85919 0.94002 0.88661 1.20725 0.87942 0.83703 0.85434 1.90461 1.69381 1.32795 1.59240 1.43816 1.18913 1.05591 1.49231 1.21818 0.95807 0.84498 1.00558 1.19648 0.96778 0.95124 1.35484 0.91089 1.26024 1.03606 0.94272 0.96454 1.70143 1.36899 1.00563 1.45776 0.85033 0.77226 0.77825 0.78454 1.19659 1.18922 1.20206 1.22796 1.08201 0.98732 0.90831 1.23060 0.94528 1.01709 0.97923 1.22794 0.95207 1.00848 1.03233 0.88148 0.93614 0.91419 0.91437 0.91236 0.93748 0.91646 0.85389 0.88031 0.85750 0.87876 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.14 113.37 1.15 1.61 16 2 O -0.39 -14.86 8.68 -130.10 -1.13 -15.99 16 3 C 0.12 4.75 2.11 29.85 0.06 4.81 16 4 H 0.10 3.26 6.67 -2.39 -0.02 3.24 16 5 C 0.43 22.82 6.76 87.66 0.59 23.42 16 6 O -0.63 -39.38 16.14 15.82 0.26 -39.13 16 7 N -0.46 -24.54 3.03 -658.89 -1.99 -26.53 16 8 C 0.12 5.20 8.26 127.77 1.06 6.25 16 9 C -0.34 -20.20 9.51 84.04 0.80 -19.40 16 10 H 0.07 4.52 7.25 -2.91 -0.02 4.50 16 11 C 0.00 -0.13 5.35 84.93 0.45 0.32 16 12 N -0.89 -46.95 9.80 21.67 0.21 -46.73 16 13 Si 0.99 43.26 29.56 68.60 2.03 45.29 16 14 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 15 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 16 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 17 C -0.19 -6.06 5.05 -10.79 -0.05 -6.12 16 18 C -0.14 -3.44 9.48 30.62 0.29 -3.15 16 19 C -0.18 -6.14 9.88 30.62 0.30 -5.84 16 20 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 21 H 0.05 1.10 8.01 -2.39 -0.02 1.08 16 22 H 0.07 1.34 7.01 -2.39 -0.02 1.33 16 23 H 0.07 2.41 4.37 -2.39 -0.01 2.40 16 24 H 0.07 3.35 6.56 -2.39 -0.02 3.33 16 25 H 0.04 2.05 7.65 -2.39 -0.02 2.03 16 26 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 27 H 0.13 3.76 6.84 -2.39 -0.02 3.75 16 28 H 0.10 2.55 5.89 -2.39 -0.01 2.53 16 29 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -71.88 256.22 5.15 -66.73 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 1.13 Total: 14.45 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 4.65 Total: 1.91 kcal Atomic # 7 Polarization: -71.49 SS G_CDS: -1.78 Total: -73.27 kcal Atomic # 8 Polarization: -54.25 SS G_CDS: -0.87 Total: -55.12 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -71.88 5.15 -66.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308256753.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.054 kcal (2) G-P(sol) polarization free energy of solvation -71.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds