Wall clock time and date at job start Sun Mar 29 2020 22:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99685 * 2 1 4 4 H 1.08996 * 109.47581 * 30.00522 * 3 2 1 5 5 C 1.50695 * 109.46991 * 269.99933 * 3 2 1 6 6 O 1.21288 * 120.00560 * 355.00553 * 5 3 2 7 7 N 1.34778 * 120.00022 * 175.00246 * 5 3 2 8 8 C 1.46507 * 119.99870 * 0.02562 * 7 5 3 9 9 C 1.37099 * 120.00502 * 180.02562 * 7 5 3 10 10 H 1.08000 * 119.99387 * 25.03772 * 9 7 5 11 11 C 1.38947 * 119.99928 * 205.04678 * 9 7 5 12 12 N 1.31412 * 120.00512 * 11.75861 * 11 9 7 13 13 Si 1.86799 * 119.99623 * 191.75774 * 11 9 7 14 14 H 1.48503 * 109.47435 * 59.99591 * 13 11 9 15 15 H 1.48500 * 109.47472 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47287 * 299.99837 * 13 11 9 17 17 C 1.53005 * 109.46846 * 150.00211 * 3 2 1 18 18 C 1.52996 * 117.51657 * 231.28119 * 17 3 2 19 19 C 1.53000 * 117.49958 * 299.91441 * 17 3 2 20 20 H 1.09004 * 109.47069 * 299.99743 * 1 2 3 21 21 H 1.08992 * 109.47583 * 59.99838 * 1 2 3 22 22 H 1.09007 * 109.47196 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47512 * 85.26512 * 8 7 5 24 24 H 1.09000 * 109.46820 * 205.26569 * 8 7 5 25 25 H 1.08997 * 109.46645 * 325.26112 * 8 7 5 26 26 H 0.97002 * 119.99632 * 180.02562 * 12 11 9 27 27 H 1.09004 * 115.55060 * 85.58024 * 17 3 2 28 28 H 1.09002 * 117.49857 * 214.96747 * 18 17 3 29 29 H 1.08999 * 117.50268 * 359.97438 * 18 17 3 30 30 H 1.09006 * 117.49423 * 359.96980 * 19 17 3 31 31 H 1.08997 * 117.50282 * 144.99755 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2144 1.7643 -1.4208 6 8 1.9790 1.0106 -2.3414 7 7 2.6587 3.0124 -1.6686 8 6 2.9436 3.9228 -0.5566 9 6 2.8441 3.4301 -2.9611 10 1 2.2872 2.9683 -3.7630 11 6 3.7486 4.4476 -3.2395 12 7 4.5896 4.8507 -2.3137 13 14 3.7690 5.2424 -4.9298 14 1 2.4444 5.8546 -5.2051 15 1 4.8183 6.2924 -4.9705 16 1 4.0611 4.2115 -5.9581 17 6 3.3589 1.2632 0.7212 18 6 3.6000 2.2897 1.8299 19 6 3.3633 0.8205 2.1858 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 3.9577 3.7502 -0.1963 24 1 2.8499 4.9537 -0.8980 25 1 2.2351 3.7418 0.2517 26 1 5.2207 5.5612 -2.5080 27 1 4.2121 0.9767 0.1063 28 1 4.6119 2.6784 1.9444 29 1 2.7980 2.9956 2.0454 30 1 2.4052 0.5598 2.6356 31 1 4.2193 0.2429 2.5344 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308256756.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:01 Heat of formation + Delta-G solvation = -42.043205 kcal Electronic energy + Delta-G solvation = -14938.377501 eV Core-core repulsion = 12414.689689 eV Total energy + Delta-G solvation = -2523.687812 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.26996 -36.90411 -36.04501 -34.41191 -31.56754 -28.37215 -26.41539 -25.56378 -23.95221 -22.02706 -20.79391 -19.06595 -17.00769 -16.60018 -15.68431 -15.32085 -14.85823 -14.52160 -13.90623 -13.62754 -13.44275 -12.94670 -12.07607 -11.76405 -11.56746 -11.35302 -11.20097 -11.09191 -10.85461 -10.62158 -10.39114 -10.24383 -10.00663 -9.91247 -9.64380 -8.95518 -8.04669 -7.60306 -6.29022 -3.86071 3.20150 3.25504 3.29496 3.76275 3.89725 4.16421 4.47362 4.95185 5.06318 5.19310 5.30414 5.35358 5.49891 5.62527 5.74339 5.87642 5.94323 6.03839 6.06263 6.17393 6.36407 6.41147 6.58735 6.89914 7.25398 7.53489 7.58757 8.18409 8.53946 9.22695 9.45191 10.03102 10.75411 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038684 B = 0.010220 C = 0.008553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.648776 B = 2738.936068 C = 3273.037573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.113 3.887 4 H 0.067 0.933 5 C 0.428 3.572 6 O -0.577 6.577 7 N -0.442 5.442 8 C 0.113 3.887 9 C -0.307 4.307 10 H 0.096 0.904 11 C 0.031 3.969 12 N -0.882 5.882 13 Si 0.926 3.074 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.273 1.273 17 C -0.137 4.137 18 C -0.166 4.166 19 C -0.171 4.171 20 H 0.033 0.967 21 H 0.044 0.956 22 H 0.082 0.918 23 H 0.058 0.942 24 H 0.071 0.929 25 H 0.021 0.979 26 H 0.267 0.733 27 H 0.111 0.889 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.305 -1.500 8.851 9.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.278 6.278 3 C 0.052 3.948 4 H 0.085 0.915 5 C 0.215 3.785 6 O -0.460 6.460 7 N -0.163 5.163 8 C -0.031 4.031 9 C -0.435 4.435 10 H 0.113 0.887 11 C -0.172 4.172 12 N -0.521 5.521 13 Si 0.753 3.247 14 H -0.200 1.200 15 H -0.209 1.209 16 H -0.198 1.198 17 C -0.156 4.156 18 C -0.203 4.203 19 C -0.209 4.209 20 H 0.051 0.949 21 H 0.063 0.937 22 H 0.100 0.900 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.040 0.960 26 H 0.077 0.923 27 H 0.129 0.871 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.157 -1.879 8.409 9.177 hybrid contribution -0.001 0.800 -0.774 1.113 sum -3.158 -1.079 7.635 8.332 Atomic orbital electron populations 1.22727 0.81730 1.02203 0.99580 1.87899 1.19018 1.26205 1.94655 1.21445 0.93527 0.85147 0.94694 0.91525 1.20550 0.85253 0.82436 0.90254 1.90516 1.56104 1.53691 1.45713 1.43573 1.56689 1.09327 1.06679 1.21642 0.98660 0.95476 0.87320 1.19590 1.21759 1.17796 0.84337 0.88668 1.25337 0.94416 0.98186 0.99243 1.69979 1.19036 1.29066 1.34011 0.86009 0.77847 0.78743 0.82144 1.19970 1.20938 1.19806 1.22038 0.97577 1.05169 0.90768 1.23084 1.03188 0.92046 1.01975 1.22881 1.02789 0.97460 0.97727 0.94887 0.93728 0.89987 0.92340 0.91022 0.96025 0.92253 0.87129 0.88206 0.88648 0.89008 0.88949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.81 101.05 1.09 1.65 16 2 O -0.36 -7.28 9.80 -55.09 -0.54 -7.82 16 3 C 0.11 2.30 1.96 -27.88 -0.05 2.24 16 4 H 0.07 1.21 6.55 -51.93 -0.34 0.87 16 5 C 0.43 11.03 6.99 -10.99 -0.08 10.95 16 6 O -0.58 -17.08 16.23 -14.31 -0.23 -17.32 16 7 N -0.44 -11.62 3.01 -122.19 -0.37 -11.99 16 8 C 0.11 2.52 6.96 59.85 0.42 2.94 16 9 C -0.31 -8.75 9.23 -14.93 -0.14 -8.89 16 10 H 0.10 2.84 7.46 -52.49 -0.39 2.45 16 11 C 0.03 0.84 5.06 -17.47 -0.09 0.75 16 12 N -0.88 -23.62 10.83 55.50 0.60 -23.02 16 13 Si 0.93 21.02 29.57 -169.99 -5.03 15.99 16 14 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 17 C -0.14 -2.47 4.44 -90.62 -0.40 -2.87 16 18 C -0.17 -2.42 7.80 -26.73 -0.21 -2.62 16 19 C -0.17 -2.42 10.16 -26.73 -0.27 -2.69 16 20 H 0.03 0.44 8.09 -51.93 -0.42 0.02 16 21 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.08 1.11 8.14 -51.92 -0.42 0.69 16 23 H 0.06 1.32 6.65 -51.93 -0.35 0.98 16 24 H 0.07 1.70 6.78 -51.93 -0.35 1.35 16 25 H 0.02 0.40 5.04 -51.93 -0.26 0.14 16 26 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 27 H 0.11 2.23 8.11 -51.93 -0.42 1.81 16 28 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 29 H 0.10 1.29 7.08 -51.93 -0.37 0.92 16 30 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 258.93 15.07 3.90 3.90 Total: -1.00 -32.18 258.93 -5.54 -37.72 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -4.15 Total: 1.08 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 0.27 Total: 1.46 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.23 Total: -35.01 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.77 Total: -25.14 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -32.18 -5.54 -37.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308256756.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.325 kcal (2) G-P(sol) polarization free energy of solvation -32.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds