Wall clock time and date at job start Sun Mar 29 2020 22:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99685 * 2 1 4 4 H 1.08996 * 109.47581 * 30.00522 * 3 2 1 5 5 C 1.50695 * 109.46991 * 269.99933 * 3 2 1 6 6 O 1.21288 * 120.00560 * 355.00553 * 5 3 2 7 7 N 1.34778 * 120.00022 * 175.00246 * 5 3 2 8 8 C 1.46507 * 119.99870 * 0.02562 * 7 5 3 9 9 C 1.37099 * 120.00502 * 180.02562 * 7 5 3 10 10 H 1.08000 * 119.99387 * 25.03772 * 9 7 5 11 11 C 1.38947 * 119.99928 * 205.04678 * 9 7 5 12 12 N 1.31412 * 120.00512 * 11.75861 * 11 9 7 13 13 Si 1.86799 * 119.99623 * 191.75774 * 11 9 7 14 14 H 1.48503 * 109.47435 * 59.99591 * 13 11 9 15 15 H 1.48500 * 109.47472 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47287 * 299.99837 * 13 11 9 17 17 C 1.53005 * 109.46846 * 150.00211 * 3 2 1 18 18 C 1.52996 * 117.51657 * 231.28119 * 17 3 2 19 19 C 1.53000 * 117.49958 * 299.91441 * 17 3 2 20 20 H 1.09004 * 109.47069 * 299.99743 * 1 2 3 21 21 H 1.08992 * 109.47583 * 59.99838 * 1 2 3 22 22 H 1.09007 * 109.47196 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47512 * 85.26512 * 8 7 5 24 24 H 1.09000 * 109.46820 * 205.26569 * 8 7 5 25 25 H 1.08997 * 109.46645 * 325.26112 * 8 7 5 26 26 H 0.97002 * 119.99632 * 180.02562 * 12 11 9 27 27 H 1.09004 * 115.55060 * 85.58024 * 17 3 2 28 28 H 1.09002 * 117.49857 * 214.96747 * 18 17 3 29 29 H 1.08999 * 117.50268 * 359.97438 * 18 17 3 30 30 H 1.09006 * 117.49423 * 359.96980 * 19 17 3 31 31 H 1.08997 * 117.50282 * 144.99755 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2144 1.7643 -1.4208 6 8 1.9790 1.0106 -2.3414 7 7 2.6587 3.0124 -1.6686 8 6 2.9436 3.9228 -0.5566 9 6 2.8441 3.4301 -2.9611 10 1 2.2872 2.9683 -3.7630 11 6 3.7486 4.4476 -3.2395 12 7 4.5896 4.8507 -2.3137 13 14 3.7690 5.2424 -4.9298 14 1 2.4444 5.8546 -5.2051 15 1 4.8183 6.2924 -4.9705 16 1 4.0611 4.2115 -5.9581 17 6 3.3589 1.2632 0.7212 18 6 3.6000 2.2897 1.8299 19 6 3.3633 0.8205 2.1858 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 3.9577 3.7502 -0.1963 24 1 2.8499 4.9537 -0.8980 25 1 2.2351 3.7418 0.2517 26 1 5.2207 5.5612 -2.5080 27 1 4.2121 0.9767 0.1063 28 1 4.6119 2.6784 1.9444 29 1 2.7980 2.9956 2.0454 30 1 2.4052 0.5598 2.6356 31 1 4.2193 0.2429 2.5344 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308256756.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:01 Heat of formation + Delta-G solvation = -63.398859 kcal Electronic energy + Delta-G solvation = -14939.303552 eV Core-core repulsion = 12414.689689 eV Total energy + Delta-G solvation = -2524.613863 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.99607 -38.59802 -37.45754 -36.39460 -33.63369 -29.95000 -28.23678 -27.11108 -25.83326 -23.18167 -22.25625 -20.84963 -18.95698 -18.42152 -17.28288 -16.89548 -16.66361 -16.07808 -15.63090 -15.24722 -15.17005 -14.36104 -13.77759 -13.68018 -13.31642 -13.15408 -12.72658 -12.56147 -12.52176 -12.19117 -12.15120 -11.97710 -11.45857 -11.30588 -11.05275 -10.91379 -9.95388 -9.66177 -8.34991 -6.01649 1.37089 1.39134 1.49797 1.93418 2.25106 2.52051 2.95914 3.07886 3.35417 3.77631 3.90703 3.91416 4.15411 4.30191 4.43763 4.54478 4.65849 4.71022 4.80220 4.85143 5.03881 5.06269 5.22754 5.32364 5.40996 5.42054 6.00516 6.17499 6.50755 7.15373 7.43571 8.01287 8.67139 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038684 B = 0.010220 C = 0.008553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.648776 B = 2738.936068 C = 3273.037573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.382 6.382 3 C 0.128 3.872 4 H 0.094 0.906 5 C 0.411 3.589 6 O -0.632 6.632 7 N -0.454 5.454 8 C 0.123 3.877 9 C -0.351 4.351 10 H 0.066 0.934 11 C 0.001 3.999 12 N -0.891 5.891 13 Si 0.989 3.011 14 H -0.266 1.266 15 H -0.266 1.266 16 H -0.280 1.280 17 C -0.177 4.177 18 C -0.151 4.151 19 C -0.142 4.142 20 H 0.068 0.932 21 H 0.019 0.981 22 H 0.106 0.894 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.275 0.725 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.407 -0.646 10.752 11.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.299 6.299 3 C 0.067 3.933 4 H 0.112 0.888 5 C 0.200 3.800 6 O -0.519 6.519 7 N -0.173 5.173 8 C -0.019 4.019 9 C -0.479 4.479 10 H 0.084 0.916 11 C -0.201 4.201 12 N -0.529 5.529 13 Si 0.812 3.188 14 H -0.191 1.191 15 H -0.190 1.190 16 H -0.206 1.206 17 C -0.196 4.196 18 C -0.188 4.188 19 C -0.178 4.178 20 H 0.087 0.913 21 H 0.038 0.962 22 H 0.124 0.876 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.125 0.875 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.252 -1.000 10.354 10.899 hybrid contribution 0.042 0.502 -1.359 1.449 sum -3.210 -0.498 8.995 9.563 Atomic orbital electron populations 1.22979 0.79827 1.04068 1.00025 1.87882 1.21249 1.26351 1.94453 1.21316 0.95355 0.85665 0.90958 0.88843 1.21709 0.83955 0.81807 0.92487 1.90457 1.58281 1.55066 1.48126 1.43845 1.56334 1.10244 1.06894 1.21623 0.99561 0.93700 0.87042 1.19557 1.23479 1.19609 0.85232 0.91629 1.26084 0.93379 0.97676 1.02990 1.70036 1.18622 1.28839 1.35355 0.85080 0.78588 0.77804 0.77337 1.19073 1.19025 1.20565 1.21876 0.95219 1.10045 0.92426 1.23224 1.04266 0.92622 0.98653 1.23004 1.04299 0.97127 0.93414 0.91317 0.96226 0.87612 0.92703 0.92640 0.92072 0.91520 0.90557 0.87504 0.86927 0.87310 0.87376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 10.81 113.37 1.23 2.05 16 2 O -0.38 -15.10 9.80 -129.99 -1.27 -16.37 16 3 C 0.13 5.09 1.96 29.85 0.06 5.15 16 4 H 0.09 3.15 6.55 -2.39 -0.02 3.13 16 5 C 0.41 21.79 6.99 87.66 0.61 22.41 16 6 O -0.63 -39.34 16.23 15.93 0.26 -39.09 16 7 N -0.45 -24.37 3.01 -658.90 -1.98 -26.35 16 8 C 0.12 5.43 6.96 127.77 0.89 6.32 16 9 C -0.35 -20.69 9.23 84.04 0.78 -19.91 16 10 H 0.07 4.16 7.46 -2.91 -0.02 4.13 16 11 C 0.00 0.06 5.06 84.93 0.43 0.49 16 12 N -0.89 -47.36 10.83 21.66 0.23 -47.12 16 13 Si 0.99 43.13 29.57 68.60 2.03 45.16 16 14 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 15 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 16 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 17 C -0.18 -6.17 4.44 -10.79 -0.05 -6.22 16 18 C -0.15 -3.90 7.80 30.60 0.24 -3.67 16 19 C -0.14 -3.49 10.16 30.60 0.31 -3.18 16 20 H 0.07 1.60 8.09 -2.38 -0.02 1.59 16 21 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 22 H 0.11 2.67 8.14 -2.38 -0.02 2.65 16 23 H 0.05 2.43 6.65 -2.39 -0.02 2.42 16 24 H 0.05 2.59 6.78 -2.39 -0.02 2.58 16 25 H 0.06 2.15 5.04 -2.39 -0.01 2.14 16 26 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 27 H 0.08 3.16 8.11 -2.38 -0.02 3.14 16 28 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.11 2.53 7.08 -2.39 -0.02 2.51 16 30 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16 31 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -72.47 258.93 4.87 -67.60 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 1.12 Total: 12.73 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 4.49 Total: 3.45 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -1.75 Total: -73.47 kcal Atomic # 8 Polarization: -54.44 SS G_CDS: -1.01 Total: -55.46 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -72.47 4.87 -67.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308256756.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.200 kcal (2) G-P(sol) polarization free energy of solvation -72.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds