Wall clock time and date at job start Sun Mar 29 2020 22:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 117.00243 * 2 1 4 4 O 1.20821 * 120.00081 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99678 * 179.97438 * 3 2 1 6 6 N 1.46500 * 110.43893 * 32.45602 * 5 3 2 7 7 C 1.36937 * 119.99921 * 302.54157 * 6 5 3 8 8 H 1.07999 * 120.00021 * 359.97438 * 7 6 5 9 9 C 1.38812 * 119.99949 * 179.97438 * 7 6 5 10 10 N 1.31614 * 120.00018 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99648 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47000 * 90.00424 * 11 9 7 13 13 H 1.48506 * 109.46693 * 209.99616 * 11 9 7 14 14 H 1.48495 * 109.47472 * 329.99690 * 11 9 7 15 15 C 1.54893 * 110.48463 * 269.76900 * 5 3 2 16 16 C 1.54887 * 102.74533 * 203.38295 * 15 5 3 17 17 C 1.54266 * 104.19888 * 37.94403 * 16 15 5 18 18 C 1.53872 * 106.59640 * 336.38805 * 17 16 15 19 19 H 1.08993 * 109.47410 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.47105 * 300.01033 * 1 2 3 21 21 H 1.09002 * 109.46704 * 60.00253 * 1 2 3 22 22 H 0.97000 * 119.99888 * 122.53347 * 6 5 3 23 23 H 0.96998 * 120.00054 * 179.97438 * 10 9 7 24 24 H 1.09001 * 110.75228 * 85.07031 * 15 5 3 25 25 H 1.09000 * 110.75571 * 321.69664 * 15 5 3 26 26 H 1.09001 * 110.48816 * 279.26329 * 16 15 5 27 27 H 1.09004 * 110.48531 * 156.62545 * 16 15 5 28 28 H 1.09003 * 110.03179 * 95.67576 * 17 16 15 29 29 H 1.09003 * 110.02980 * 217.05505 * 17 16 15 30 30 H 1.09002 * 110.03208 * 119.28196 * 18 17 16 31 31 H 1.08996 * 110.03362 * 240.71095 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 7 4.1381 0.1445 -0.7357 7 6 3.8459 -1.1383 -0.3558 8 1 3.1943 -1.3168 0.4868 9 6 4.3872 -2.2091 -1.0537 10 7 5.1808 -1.9916 -2.0809 11 14 3.9891 -3.9590 -0.5350 12 1 2.7759 -4.4245 -1.2539 13 1 5.1326 -4.8461 -0.8678 14 1 3.7424 -3.9975 0.9288 15 6 4.1068 1.3092 1.4518 16 6 5.4922 1.9813 1.2846 17 6 5.2618 3.0600 0.2061 18 6 4.0373 2.6107 -0.6103 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5140 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 4.7235 0.3049 -1.4923 23 1 5.5593 -2.7399 -2.5683 24 1 4.2127 0.2995 1.8486 25 1 3.4602 1.9107 2.0906 26 1 6.2305 1.2545 0.9457 27 1 5.8092 2.4399 2.2213 28 1 5.0637 4.0227 0.6772 29 1 6.1361 3.1339 -0.4407 30 1 3.2449 3.3554 -0.5353 31 1 4.3169 2.4662 -1.6538 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308300502.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:56 Heat of formation + Delta-G solvation = -81.802272 kcal Electronic energy + Delta-G solvation = -15083.770859 eV Core-core repulsion = 12558.358964 eV Total energy + Delta-G solvation = -2525.411895 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.93322 -37.47793 -35.55745 -33.47931 -30.73661 -28.27251 -27.64712 -26.61259 -23.52966 -21.90860 -20.04670 -18.81353 -17.24738 -16.93380 -15.75008 -15.48475 -15.01369 -14.39286 -13.88211 -13.41251 -13.14116 -12.58725 -12.55533 -11.76015 -11.43863 -11.25927 -10.92645 -10.79083 -10.71322 -10.55451 -10.48658 -10.11443 -10.04120 -9.96937 -9.74575 -9.62253 -8.89142 -7.10508 -5.83438 -3.11293 3.00040 3.39672 3.48032 3.49635 3.62186 4.55252 5.07939 5.16268 5.31848 5.54656 5.59041 5.64412 5.67173 5.82474 5.93545 5.98290 6.04719 6.15350 6.24913 6.37669 6.40863 6.52896 6.68844 6.79507 6.93952 7.20217 7.80472 8.30695 8.62153 9.46673 9.94071 10.31608 11.38367 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.025881 B = 0.013561 C = 0.010156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.613683 B = 2064.219579 C = 2756.239662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.319 6.319 3 C 0.458 3.542 4 O -0.546 6.546 5 C 0.206 3.794 6 N -0.692 5.692 7 C -0.229 4.229 8 H 0.084 0.916 9 C -0.008 4.008 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.289 1.289 13 H -0.293 1.293 14 H -0.280 1.280 15 C -0.127 4.127 16 C -0.112 4.112 17 C -0.117 4.117 18 C -0.120 4.120 19 H 0.091 0.909 20 H 0.050 0.950 21 H 0.052 0.948 22 H 0.391 0.609 23 H 0.256 0.744 24 H 0.082 0.918 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.765 6.147 4.981 8.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.233 6.233 3 C 0.300 3.700 4 O -0.436 6.436 5 C 0.110 3.890 6 N -0.333 5.333 7 C -0.359 4.359 8 H 0.102 0.898 9 C -0.204 4.204 10 N -0.577 5.577 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.219 1.219 14 H -0.205 1.205 15 C -0.167 4.167 16 C -0.150 4.150 17 C -0.155 4.155 18 C -0.158 4.158 19 H 0.109 0.891 20 H 0.069 0.931 21 H 0.071 0.929 22 H 0.226 0.774 23 H 0.066 0.934 24 H 0.101 0.899 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.018 6.227 5.017 8.547 hybrid contribution -0.387 -0.944 -0.144 1.030 sum -3.405 5.282 4.873 7.952 Atomic orbital electron populations 1.23161 0.80220 1.02604 1.01081 1.87063 1.20381 1.33206 1.82658 1.26020 0.93456 0.80768 0.69733 1.90508 1.67699 1.37104 1.48294 1.20369 0.84269 0.90133 0.94205 1.42527 1.55173 1.00403 1.35161 1.19343 1.22632 0.82135 1.11804 0.89794 1.24781 0.99759 0.98087 0.97810 1.69667 1.35863 1.30536 1.21632 0.86160 0.77233 0.84549 0.78059 1.21662 1.21894 1.20539 1.22909 0.96347 1.01584 0.95860 1.22214 0.97606 0.97500 0.97660 1.22054 0.97588 0.98299 0.97569 1.22356 0.98225 0.95462 0.99750 0.89080 0.93134 0.92946 0.77369 0.93375 0.89894 0.92580 0.90696 0.92455 0.92320 0.91919 0.90072 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.56 101.05 1.07 1.47 16 2 O -0.32 -6.94 7.79 -39.26 -0.31 -7.25 16 3 C 0.46 9.96 6.89 36.01 0.25 10.20 16 4 O -0.55 -12.06 15.36 -18.75 -0.29 -12.35 16 5 C 0.21 4.26 0.89 -131.31 -0.12 4.15 16 6 N -0.69 -16.75 5.14 -46.76 -0.24 -16.99 16 7 C -0.23 -6.04 7.77 -15.06 -0.12 -6.16 16 8 H 0.08 2.21 6.55 -52.49 -0.34 1.86 16 9 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 10 N -0.93 -27.05 13.06 55.49 0.72 -26.32 16 11 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 C -0.13 -2.34 5.90 -24.74 -0.15 -2.49 16 16 C -0.11 -1.81 6.79 -25.07 -0.17 -1.98 16 17 C -0.12 -1.79 6.80 -25.61 -0.17 -1.96 16 18 C -0.12 -2.14 5.98 -25.61 -0.15 -2.30 16 19 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 20 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 21 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 22 H 0.39 9.99 7.48 -40.82 -0.31 9.68 16 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.08 1.64 7.42 -51.93 -0.39 1.26 16 25 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16 26 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.45 6.80 -51.93 -0.35 1.09 16 31 H 0.07 1.28 7.76 -51.93 -0.40 0.88 16 LS Contribution 258.66 15.07 3.90 3.90 Total: -1.00 -29.77 258.66 -5.20 -34.96 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -4.30 Total: 6.52 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 0.34 Total: 0.61 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.48 Total: -43.31 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.59 Total: -19.59 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.77 -5.20 -34.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308300502.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.838 kcal (2) G-P(sol) polarization free energy of solvation -29.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds