Wall clock time and date at job start Sun Mar 29 2020 22:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 117.00243 * 2 1 4 4 O 1.20821 * 120.00081 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99678 * 179.97438 * 3 2 1 6 6 N 1.46500 * 110.43893 * 32.45602 * 5 3 2 7 7 C 1.36937 * 119.99921 * 302.54157 * 6 5 3 8 8 H 1.07999 * 120.00021 * 359.97438 * 7 6 5 9 9 C 1.38812 * 119.99949 * 179.97438 * 7 6 5 10 10 N 1.31614 * 120.00018 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99648 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47000 * 90.00424 * 11 9 7 13 13 H 1.48506 * 109.46693 * 209.99616 * 11 9 7 14 14 H 1.48495 * 109.47472 * 329.99690 * 11 9 7 15 15 C 1.54893 * 110.48463 * 269.76900 * 5 3 2 16 16 C 1.54887 * 102.74533 * 203.38295 * 15 5 3 17 17 C 1.54266 * 104.19888 * 37.94403 * 16 15 5 18 18 C 1.53872 * 106.59640 * 336.38805 * 17 16 15 19 19 H 1.08993 * 109.47410 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.47105 * 300.01033 * 1 2 3 21 21 H 1.09002 * 109.46704 * 60.00253 * 1 2 3 22 22 H 0.97000 * 119.99888 * 122.53347 * 6 5 3 23 23 H 0.96998 * 120.00054 * 179.97438 * 10 9 7 24 24 H 1.09001 * 110.75228 * 85.07031 * 15 5 3 25 25 H 1.09000 * 110.75571 * 321.69664 * 15 5 3 26 26 H 1.09001 * 110.48816 * 279.26329 * 16 15 5 27 27 H 1.09004 * 110.48531 * 156.62545 * 16 15 5 28 28 H 1.09003 * 110.03179 * 95.67576 * 17 16 15 29 29 H 1.09003 * 110.02980 * 217.05505 * 17 16 15 30 30 H 1.09002 * 110.03208 * 119.28196 * 18 17 16 31 31 H 1.08996 * 110.03362 * 240.71095 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 7 4.1381 0.1445 -0.7357 7 6 3.8459 -1.1383 -0.3558 8 1 3.1943 -1.3168 0.4868 9 6 4.3872 -2.2091 -1.0537 10 7 5.1808 -1.9916 -2.0809 11 14 3.9891 -3.9590 -0.5350 12 1 2.7759 -4.4245 -1.2539 13 1 5.1326 -4.8461 -0.8678 14 1 3.7424 -3.9975 0.9288 15 6 4.1068 1.3092 1.4518 16 6 5.4922 1.9813 1.2846 17 6 5.2618 3.0600 0.2061 18 6 4.0373 2.6107 -0.6103 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5140 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 4.7235 0.3049 -1.4923 23 1 5.5593 -2.7399 -2.5683 24 1 4.2127 0.2995 1.8486 25 1 3.4602 1.9107 2.0906 26 1 6.2305 1.2545 0.9457 27 1 5.8092 2.4399 2.2213 28 1 5.0637 4.0227 0.6772 29 1 6.1361 3.1339 -0.4407 30 1 3.2449 3.3554 -0.5353 31 1 4.3169 2.4662 -1.6538 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308300502.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:56 Heat of formation + Delta-G solvation = -100.490874 kcal Electronic energy + Delta-G solvation = -15084.581258 eV Core-core repulsion = 12558.358964 eV Total energy + Delta-G solvation = -2526.222294 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.58967 -39.01516 -37.25311 -35.31476 -32.56784 -29.68442 -29.28915 -28.08435 -25.49193 -23.47222 -21.42222 -20.43391 -19.15250 -18.63053 -17.39286 -17.11181 -16.61820 -16.03917 -15.52130 -15.19908 -14.69271 -14.13057 -14.07193 -13.34591 -13.04656 -12.90320 -12.75993 -12.33838 -12.26968 -12.10236 -11.90149 -11.81683 -11.65547 -11.61134 -11.55887 -11.16583 -10.81810 -9.07620 -7.90519 -5.19047 1.29641 1.51419 1.51737 1.60617 2.05813 2.59742 3.48301 3.60767 3.76113 3.82932 4.01706 4.31952 4.34277 4.42059 4.56131 4.60993 4.67470 4.74246 4.86481 4.99884 5.11479 5.13784 5.29018 5.39721 5.55996 5.59304 5.70949 6.27718 6.92659 7.38532 7.99972 8.28898 9.32284 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.025881 B = 0.013561 C = 0.010156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.613683 B = 2064.219579 C = 2756.239662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.345 6.345 3 C 0.455 3.545 4 O -0.552 6.552 5 C 0.194 3.806 6 N -0.703 5.703 7 C -0.214 4.214 8 H 0.084 0.916 9 C -0.069 4.069 10 N -0.967 5.967 11 Si 0.965 3.035 12 H -0.291 1.291 13 H -0.298 1.298 14 H -0.268 1.268 15 C -0.123 4.123 16 C -0.107 4.107 17 C -0.110 4.110 18 C -0.117 4.117 19 H 0.116 0.884 20 H 0.065 0.935 21 H 0.054 0.946 22 H 0.381 0.619 23 H 0.250 0.750 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.280 6.998 6.248 9.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.259 6.259 3 C 0.299 3.701 4 O -0.443 6.443 5 C 0.099 3.901 6 N -0.343 5.343 7 C -0.345 4.345 8 H 0.102 0.898 9 C -0.261 4.261 10 N -0.618 5.618 11 Si 0.795 3.205 12 H -0.218 1.218 13 H -0.225 1.225 14 H -0.193 1.193 15 C -0.163 4.163 16 C -0.145 4.145 17 C -0.148 4.148 18 C -0.155 4.155 19 H 0.135 0.865 20 H 0.084 0.916 21 H 0.073 0.927 22 H 0.215 0.785 23 H 0.059 0.941 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.568 7.104 6.325 10.159 hybrid contribution -0.365 -1.116 -0.486 1.271 sum -3.933 5.988 5.840 9.242 Atomic orbital electron populations 1.23466 0.77425 1.04689 1.01935 1.86959 1.23169 1.33242 1.82534 1.25912 0.93876 0.80739 0.69615 1.90495 1.67965 1.37146 1.48730 1.20764 0.83484 0.90287 0.95528 1.42575 1.55531 1.00782 1.35384 1.19535 1.21120 0.83150 1.10723 0.89811 1.25455 1.00708 1.01375 0.98532 1.69802 1.37874 1.30865 1.23255 0.85260 0.76460 0.80618 0.78166 1.21828 1.22528 1.19312 1.22873 0.97990 1.01192 0.94226 1.22194 0.95528 0.97269 0.99478 1.22057 0.96562 0.99054 0.97105 1.22374 0.99509 0.93883 0.99779 0.86524 0.91635 0.92744 0.78515 0.94110 0.91788 0.90906 0.92735 0.89297 0.89536 0.90945 0.89846 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 10.56 113.37 1.20 1.79 16 2 O -0.34 -14.61 7.79 -51.42 -0.40 -15.01 16 3 C 0.46 19.30 6.89 71.24 0.49 19.79 16 4 O -0.55 -23.53 15.36 21.98 0.34 -23.20 16 5 C 0.19 7.82 0.89 3.93 0.00 7.82 16 6 N -0.70 -34.13 5.14 -301.85 -1.55 -35.68 16 7 C -0.21 -11.33 7.77 84.03 0.65 -10.67 16 8 H 0.08 4.37 6.55 -2.91 -0.02 4.35 16 9 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 10 N -0.97 -57.41 13.06 21.65 0.28 -57.12 16 11 Si 0.97 45.32 29.55 68.60 2.03 47.35 16 12 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 13 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 14 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 15 C -0.12 -4.34 5.90 31.89 0.19 -4.15 16 16 C -0.11 -3.20 6.79 31.67 0.22 -2.99 16 17 C -0.11 -3.04 6.80 31.32 0.21 -2.83 16 18 C -0.12 -4.02 5.98 31.32 0.19 -3.83 16 19 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 20 H 0.06 1.87 8.13 -2.39 -0.02 1.85 16 21 H 0.05 1.69 8.13 -2.39 -0.02 1.68 16 22 H 0.38 19.81 7.48 -92.71 -0.69 19.11 16 23 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 24 H 0.06 2.48 7.42 -2.39 -0.02 2.46 16 25 H 0.07 2.31 8.05 -2.39 -0.02 2.29 16 26 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 28 H 0.09 1.94 8.14 -2.39 -0.02 1.93 16 29 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.08 2.81 6.80 -2.39 -0.02 2.80 16 31 H 0.06 2.27 7.76 -2.39 -0.02 2.26 16 Total: -1.00 -63.07 258.66 4.74 -58.33 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.43 Total: 23.75 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 3.61 Total: 1.58 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -1.27 Total: -92.80 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -0.06 Total: -38.21 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -63.07 4.74 -58.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308300502.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.164 kcal (2) G-P(sol) polarization free energy of solvation -63.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds