Wall clock time and date at job start Sun Mar 29 2020 22:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 116.99644 * 2 1 4 4 O 1.20824 * 120.00126 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99861 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.47203 * 179.97438 * 5 3 2 7 7 C 1.36937 * 120.00090 * 270.00238 * 6 5 3 8 8 H 1.07995 * 119.99965 * 188.59559 * 7 6 5 9 9 C 1.38809 * 119.99888 * 8.59128 * 7 6 5 10 10 N 1.31625 * 120.00188 * 27.21369 * 9 7 6 11 11 Si 1.86807 * 119.99968 * 207.21040 * 9 7 6 12 12 H 1.48502 * 109.46718 * 90.00571 * 11 9 7 13 13 H 1.48505 * 109.47081 * 210.00138 * 11 9 7 14 14 H 1.48495 * 109.47176 * 330.00391 * 11 9 7 15 15 C 1.46498 * 119.99959 * 89.99790 * 6 5 3 16 16 C 1.53001 * 109.47206 * 264.24703 * 15 6 5 17 17 C 1.53001 * 117.49615 * 243.62090 * 16 15 6 18 18 C 1.52995 * 60.00014 * 252.51062 * 17 16 15 19 19 H 1.08999 * 109.46846 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47502 * 299.99630 * 1 2 3 21 21 H 1.08999 * 109.47098 * 60.00266 * 1 2 3 22 22 H 1.09005 * 109.47355 * 60.00201 * 5 3 2 23 23 H 1.08995 * 109.46970 * 300.00114 * 5 3 2 24 24 H 0.96999 * 119.99795 * 179.97438 * 10 9 7 25 25 H 1.09005 * 109.47277 * 24.24334 * 15 6 5 26 26 H 1.08996 * 109.47499 * 144.24140 * 15 6 5 27 27 H 1.08995 * 115.55258 * 29.32509 * 16 15 6 28 28 H 1.08999 * 117.49996 * 359.97438 * 17 16 15 29 29 H 1.09002 * 117.50090 * 145.01750 * 17 16 15 30 30 H 1.09008 * 117.49887 * 252.50778 * 18 17 16 31 31 H 1.09002 * 117.50147 * 107.49031 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6799 -0.0011 7 6 4.1752 3.3362 -1.1872 8 1 4.6129 4.3235 -1.1928 9 6 3.8091 2.7325 -2.3823 10 7 2.8404 1.8415 -2.3998 11 14 4.6910 3.1846 -3.9658 12 1 5.8575 2.2857 -4.1566 13 1 3.7584 3.0354 -5.1118 14 1 5.1581 4.5920 -3.8877 15 6 4.1897 3.3826 1.2674 16 6 2.9213 4.1542 1.6370 17 6 3.0170 5.6798 1.7047 18 6 2.8954 4.8630 2.9927 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 3.9557 0.7811 -0.8909 23 1 3.9563 0.7807 0.8891 24 1 2.5843 1.4199 -3.2350 25 1 4.4161 2.6592 2.0507 26 1 5.0218 4.0791 1.1647 27 1 1.9872 3.7238 1.2762 28 1 3.9836 6.1336 1.4863 29 1 2.1457 6.2533 1.3882 30 1 1.9441 4.8992 3.5237 31 1 3.7820 4.7795 3.6213 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308305672.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:11 Heat of formation + Delta-G solvation = -32.395307 kcal Electronic energy + Delta-G solvation = -14977.739288 eV Core-core repulsion = 12454.469840 eV Total energy + Delta-G solvation = -2523.269448 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.92479 -37.06505 -35.30494 -34.28743 -31.17397 -28.26856 -26.30359 -25.82833 -22.15810 -21.74871 -20.00034 -19.35650 -16.88490 -16.20245 -15.70420 -15.06770 -14.84081 -14.36563 -13.68209 -13.42188 -13.27226 -12.29183 -12.12965 -11.64860 -11.23161 -11.09012 -10.96142 -10.85706 -10.82297 -10.47024 -10.15386 -9.98507 -9.66738 -9.41796 -9.09148 -8.95502 -8.45415 -7.09057 -5.90922 -3.14928 3.38653 3.46127 3.47714 3.91869 4.09240 4.46872 4.56375 5.27970 5.30917 5.54293 5.67145 5.82826 5.87150 5.90468 6.11579 6.13082 6.30060 6.33285 6.46911 6.50130 6.55280 6.67699 6.82769 7.06342 7.34159 7.73522 7.86492 8.19611 9.05663 9.44945 9.75847 10.16974 11.21130 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.019889 B = 0.015711 C = 0.009876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.494643 B = 1781.726331 C = 2834.519801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.384 6.384 3 C 0.466 3.534 4 O -0.504 6.504 5 C 0.187 3.813 6 N -0.566 5.566 7 C -0.247 4.247 8 H 0.082 0.918 9 C -0.001 4.001 10 N -0.901 5.901 11 Si 0.905 3.095 12 H -0.287 1.287 13 H -0.294 1.294 14 H -0.280 1.280 15 C 0.173 3.827 16 C -0.159 4.159 17 C -0.180 4.180 18 C -0.201 4.201 19 H 0.079 0.921 20 H 0.044 0.956 21 H 0.052 0.948 22 H 0.111 0.889 23 H 0.054 0.946 24 H 0.256 0.744 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.125 0.875 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.073 -1.453 6.685 6.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.301 6.301 3 C 0.306 3.694 4 O -0.389 6.389 5 C 0.057 3.943 6 N -0.285 5.285 7 C -0.375 4.375 8 H 0.100 0.900 9 C -0.199 4.199 10 N -0.547 5.547 11 Si 0.735 3.265 12 H -0.214 1.214 13 H -0.221 1.221 14 H -0.206 1.206 15 C 0.047 3.953 16 C -0.179 4.179 17 C -0.217 4.217 18 C -0.239 4.239 19 H 0.097 0.903 20 H 0.063 0.937 21 H 0.071 0.929 22 H 0.129 0.871 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.142 0.858 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.184 -1.199 6.528 6.640 hybrid contribution -0.293 0.469 -1.048 1.185 sum -0.477 -0.730 5.481 5.550 Atomic orbital electron populations 1.22833 0.80053 1.01176 1.01161 1.86555 1.20826 1.36935 1.85793 1.25616 0.93553 0.80159 0.70080 1.90376 1.66629 1.36301 1.45577 1.20497 0.85599 0.86752 1.01408 1.44332 1.75115 1.07116 1.01919 1.19293 1.33908 1.01584 0.82744 0.90019 1.24726 0.97366 0.99881 0.97899 1.69878 1.26113 1.32279 1.26384 0.86215 0.79365 0.78020 0.82863 1.21405 1.22082 1.20569 1.20604 0.93271 0.94093 0.87369 1.23766 1.04124 0.93609 0.96424 1.22796 1.01856 0.95680 1.01357 1.22886 1.01580 1.08008 0.91407 0.90280 0.93745 0.92913 0.87149 0.92854 0.93310 0.93415 0.93075 0.85757 0.89658 0.90106 0.90176 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.84 16 2 O -0.38 -8.45 10.57 -39.26 -0.41 -8.86 16 3 C 0.47 11.43 6.02 36.01 0.22 11.65 16 4 O -0.50 -13.70 13.18 -18.75 -0.25 -13.95 16 5 C 0.19 4.38 5.58 -5.19 -0.03 4.35 16 6 N -0.57 -13.83 2.07 -174.61 -0.36 -14.19 16 7 C -0.25 -6.63 9.67 -15.06 -0.15 -6.77 16 8 H 0.08 2.18 7.96 -52.49 -0.42 1.76 16 9 C 0.00 -0.03 4.83 -17.43 -0.08 -0.12 16 10 N -0.90 -25.58 9.07 55.49 0.50 -25.08 16 11 Si 0.91 21.62 29.63 -169.99 -5.04 16.59 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 15 C 0.17 3.58 6.00 -4.04 -0.02 3.55 16 16 C -0.16 -3.27 5.91 -90.62 -0.54 -3.81 16 17 C -0.18 -3.28 10.18 -26.73 -0.27 -3.56 16 18 C -0.20 -3.34 10.25 -26.73 -0.27 -3.62 16 19 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 20 H 0.04 0.77 8.13 -51.93 -0.42 0.34 16 21 H 0.05 1.03 8.13 -51.93 -0.42 0.60 16 22 H 0.11 2.77 6.38 -51.93 -0.33 2.44 16 23 H 0.05 1.06 7.86 -51.93 -0.41 0.65 16 24 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.05 0.88 7.83 -51.93 -0.41 0.47 16 26 H 0.05 1.01 7.82 -51.93 -0.41 0.61 16 27 H 0.12 3.03 5.36 -51.93 -0.28 2.75 16 28 H 0.08 1.47 8.03 -51.93 -0.42 1.06 16 29 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 30 H 0.08 1.26 8.14 -51.92 -0.42 0.83 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 263.22 15.07 3.97 3.97 Total: -1.00 -30.47 263.22 -6.01 -36.48 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -4.34 Total: 1.52 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -0.08 Total: 3.53 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.14 Total: -39.26 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.66 Total: -22.81 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.04 Total: 16.59 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.47 -6.01 -36.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308305672.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.082 kcal (2) G-P(sol) polarization free energy of solvation -30.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds