Wall clock time and date at job start Sun Mar 29 2020 22:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 116.99644 * 2 1 4 4 O 1.20824 * 120.00126 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99861 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.47203 * 179.97438 * 5 3 2 7 7 C 1.36937 * 120.00090 * 270.00238 * 6 5 3 8 8 H 1.07995 * 119.99965 * 188.59559 * 7 6 5 9 9 C 1.38809 * 119.99888 * 8.59128 * 7 6 5 10 10 N 1.31625 * 120.00188 * 27.21369 * 9 7 6 11 11 Si 1.86807 * 119.99968 * 207.21040 * 9 7 6 12 12 H 1.48502 * 109.46718 * 90.00571 * 11 9 7 13 13 H 1.48505 * 109.47081 * 210.00138 * 11 9 7 14 14 H 1.48495 * 109.47176 * 330.00391 * 11 9 7 15 15 C 1.46498 * 119.99959 * 89.99790 * 6 5 3 16 16 C 1.53001 * 109.47206 * 264.24703 * 15 6 5 17 17 C 1.53001 * 117.49615 * 243.62090 * 16 15 6 18 18 C 1.52995 * 60.00014 * 252.51062 * 17 16 15 19 19 H 1.08999 * 109.46846 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47502 * 299.99630 * 1 2 3 21 21 H 1.08999 * 109.47098 * 60.00266 * 1 2 3 22 22 H 1.09005 * 109.47355 * 60.00201 * 5 3 2 23 23 H 1.08995 * 109.46970 * 300.00114 * 5 3 2 24 24 H 0.96999 * 119.99795 * 179.97438 * 10 9 7 25 25 H 1.09005 * 109.47277 * 24.24334 * 15 6 5 26 26 H 1.08996 * 109.47499 * 144.24140 * 15 6 5 27 27 H 1.08995 * 115.55258 * 29.32509 * 16 15 6 28 28 H 1.08999 * 117.49996 * 359.97438 * 17 16 15 29 29 H 1.09002 * 117.50090 * 145.01750 * 17 16 15 30 30 H 1.09008 * 117.49887 * 252.50778 * 18 17 16 31 31 H 1.09002 * 117.50147 * 107.49031 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6799 -0.0011 7 6 4.1752 3.3362 -1.1872 8 1 4.6129 4.3235 -1.1928 9 6 3.8091 2.7325 -2.3823 10 7 2.8404 1.8415 -2.3998 11 14 4.6910 3.1846 -3.9658 12 1 5.8575 2.2857 -4.1566 13 1 3.7584 3.0354 -5.1118 14 1 5.1581 4.5920 -3.8877 15 6 4.1897 3.3826 1.2674 16 6 2.9213 4.1542 1.6370 17 6 3.0170 5.6798 1.7047 18 6 2.8954 4.8630 2.9927 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 3.9557 0.7811 -0.8909 23 1 3.9563 0.7807 0.8891 24 1 2.5843 1.4199 -3.2350 25 1 4.4161 2.6592 2.0507 26 1 5.0218 4.0791 1.1647 27 1 1.9872 3.7238 1.2762 28 1 3.9836 6.1336 1.4863 29 1 2.1457 6.2533 1.3882 30 1 1.9441 4.8992 3.5237 31 1 3.7820 4.7795 3.6213 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308305672.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:10 Heat of formation + Delta-G solvation = -49.921192 kcal Electronic energy + Delta-G solvation = -14978.499268 eV Core-core repulsion = 12454.469840 eV Total energy + Delta-G solvation = -2524.029428 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.76196 -38.66060 -37.03247 -36.16956 -33.13722 -30.00729 -27.96475 -27.62530 -24.00898 -23.12449 -21.74945 -21.03690 -18.81452 -18.04196 -17.50420 -16.86279 -16.54986 -16.10517 -15.35511 -15.08117 -15.01462 -13.92793 -13.88356 -13.48076 -12.93811 -12.77957 -12.72014 -12.51818 -12.32144 -12.21850 -12.02990 -11.93293 -11.36557 -11.06676 -10.85171 -10.56933 -10.44156 -9.01834 -7.95269 -5.19640 1.48876 1.51091 1.58853 2.06015 2.36712 2.58454 3.06476 3.25043 3.60001 4.08499 4.21452 4.35940 4.41136 4.47704 4.55036 4.66818 4.77039 4.81377 4.87955 4.94895 5.03987 5.18501 5.24625 5.32851 5.65471 5.68845 6.04157 6.23306 7.05144 7.56471 7.83897 8.19609 9.14733 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.019889 B = 0.015711 C = 0.009876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.494643 B = 1781.726331 C = 2834.519801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.388 6.388 3 C 0.466 3.534 4 O -0.537 6.537 5 C 0.185 3.815 6 N -0.580 5.580 7 C -0.250 4.250 8 H 0.078 0.922 9 C -0.051 4.051 10 N -0.927 5.927 11 Si 0.966 3.034 12 H -0.280 1.280 13 H -0.306 1.306 14 H -0.275 1.275 15 C 0.172 3.828 16 C -0.189 4.189 17 C -0.184 4.184 18 C -0.164 4.164 19 H 0.125 0.875 20 H 0.051 0.949 21 H 0.032 0.968 22 H 0.090 0.910 23 H 0.091 0.909 24 H 0.248 0.752 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.812 -1.424 7.954 8.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.305 6.305 3 C 0.308 3.692 4 O -0.424 6.424 5 C 0.055 3.945 6 N -0.299 5.299 7 C -0.380 4.380 8 H 0.096 0.904 9 C -0.246 4.246 10 N -0.574 5.574 11 Si 0.795 3.205 12 H -0.207 1.207 13 H -0.233 1.233 14 H -0.200 1.200 15 C 0.047 3.953 16 C -0.210 4.210 17 C -0.221 4.221 18 C -0.202 4.202 19 H 0.143 0.857 20 H 0.070 0.930 21 H 0.051 0.949 22 H 0.108 0.892 23 H 0.109 0.891 24 H 0.058 0.942 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.102 0.898 28 H 0.114 0.886 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.570 -1.175 7.826 7.934 hybrid contribution -0.589 0.445 -1.372 1.558 sum -0.019 -0.730 6.454 6.495 Atomic orbital electron populations 1.23119 0.77790 1.04006 1.00522 1.86508 1.23021 1.35636 1.85303 1.25770 0.94087 0.80205 0.69172 1.90371 1.67469 1.37458 1.47146 1.20524 0.85141 0.86679 1.02106 1.44498 1.75205 1.07609 1.02554 1.19507 1.32965 1.01444 0.84042 0.90382 1.25393 0.98072 1.00603 1.00510 1.70032 1.27411 1.33701 1.26238 0.85277 0.78034 0.77998 0.79183 1.20685 1.23311 1.19965 1.20754 0.93416 0.94676 0.86442 1.23458 1.02225 0.94889 1.00409 1.22873 1.02239 0.94215 1.02812 1.22961 1.03329 1.03829 0.90070 0.85703 0.93048 0.94926 0.89186 0.89130 0.94244 0.90994 0.92351 0.89753 0.88631 0.90628 0.89126 0.87033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.40 10.56 113.37 1.20 2.60 16 2 O -0.39 -16.86 10.57 -51.41 -0.54 -17.40 16 3 C 0.47 22.95 6.02 71.24 0.43 23.38 16 4 O -0.54 -29.74 13.18 21.97 0.29 -29.45 16 5 C 0.19 8.59 5.58 85.63 0.48 9.07 16 6 N -0.58 -28.05 2.07 -706.35 -1.46 -29.51 16 7 C -0.25 -13.44 9.67 84.03 0.81 -12.63 16 8 H 0.08 4.16 7.96 -2.91 -0.02 4.13 16 9 C -0.05 -2.81 4.83 84.86 0.41 -2.40 16 10 N -0.93 -53.56 9.07 21.65 0.20 -53.36 16 11 Si 0.97 44.92 29.63 68.60 2.03 46.95 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.31 -14.68 7.11 99.48 0.71 -13.97 16 14 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 15 C 0.17 6.84 6.00 86.38 0.52 7.36 16 16 C -0.19 -7.59 5.91 -10.79 -0.06 -7.66 16 17 C -0.18 -6.43 10.18 30.59 0.31 -6.12 16 18 C -0.16 -4.98 10.25 30.59 0.31 -4.66 16 19 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 20 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 21 H 0.03 1.27 8.13 -2.39 -0.02 1.25 16 22 H 0.09 4.56 6.38 -2.38 -0.02 4.54 16 23 H 0.09 3.44 7.86 -2.39 -0.02 3.42 16 24 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 25 H 0.07 2.45 7.83 -2.38 -0.02 2.43 16 26 H 0.06 2.20 7.82 -2.39 -0.02 2.18 16 27 H 0.08 4.16 5.36 -2.39 -0.01 4.15 16 28 H 0.10 3.11 8.03 -2.39 -0.02 3.09 16 29 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 31 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -65.90 263.22 6.03 -59.87 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 1.11 Total: 13.96 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 4.41 Total: 8.94 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -1.26 Total: -82.87 kcal Atomic # 8 Polarization: -46.60 SS G_CDS: -0.25 Total: -46.85 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -65.90 6.03 -59.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308305672.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.953 kcal (2) G-P(sol) polarization free energy of solvation -65.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds