Wall clock time and date at job start Sun Mar 29 2020 21:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 O 1.42895 * 109.47036 * 239.99631 * 2 1 3 5 5 C 1.42902 * 113.99750 * 90.00531 * 4 2 1 6 6 C 1.53002 * 109.46999 * 179.97438 * 5 4 2 7 7 C 1.52998 * 117.49767 * 243.61820 * 6 5 4 8 8 C 1.53001 * 60.00165 * 252.51178 * 7 6 5 9 9 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 10 10 O 1.21289 * 120.00012 * 115.00189 * 9 2 1 11 11 N 1.34778 * 119.99817 * 295.00053 * 9 2 1 12 12 C 1.37100 * 119.99563 * 180.02562 * 11 9 2 13 13 H 1.08004 * 120.00645 * 359.97438 * 12 11 9 14 14 C 1.38952 * 119.99843 * 180.02562 * 12 11 9 15 15 N 1.31409 * 120.00003 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00149 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47172 * 89.99891 * 16 14 12 18 18 H 1.48499 * 109.47095 * 209.99734 * 16 14 12 19 19 H 1.48496 * 109.46828 * 329.99569 * 16 14 12 20 20 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 23 23 H 1.09004 * 109.46841 * 299.99499 * 5 4 2 24 24 H 1.08997 * 109.47617 * 59.99620 * 5 4 2 25 25 H 1.08998 * 115.54741 * 29.33232 * 6 5 4 26 26 H 1.08998 * 117.49871 * 359.97438 * 7 6 5 27 27 H 1.09000 * 117.49690 * 145.02476 * 7 6 5 28 28 H 1.08998 * 117.50138 * 252.51213 * 8 7 6 29 29 H 1.09006 * 117.49959 * 107.48791 * 8 7 6 30 30 H 0.96996 * 120.00289 * 359.97438 * 11 9 2 31 31 H 0.97000 * 120.00057 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2002 0.1829 -2.2940 6 6 2.7092 -0.6407 -3.4787 7 6 4.1061 -0.3198 -4.0139 8 6 2.8681 0.0761 -4.8211 9 6 2.0323 -0.7104 1.2305 10 8 2.6530 -1.7467 1.1215 11 7 1.7918 -0.1941 2.4520 12 6 2.2492 -0.8402 3.5714 13 1 2.8019 -1.7630 3.4744 14 6 2.0009 -0.3082 4.8308 15 7 1.3280 0.8143 4.9489 16 14 2.6234 -1.1888 6.3561 17 1 3.9845 -0.6979 6.6902 18 1 1.7068 -0.9183 7.4926 19 1 2.6739 -2.6503 6.0979 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.2539 0.6546 -2.5588 24 1 2.9320 0.9513 -2.0450 25 1 2.3889 -1.6824 -3.4993 26 1 4.6624 0.4783 -3.5223 27 1 4.7053 -1.1506 -4.3866 28 1 2.6529 -0.4941 -5.7247 29 1 2.6100 1.1345 -4.8601 30 1 1.2958 0.6349 2.5391 31 1 1.1549 1.1859 5.8280 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308344181.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:11 Heat of formation + Delta-G solvation = -66.578417 kcal Electronic energy + Delta-G solvation = -13990.201452 eV Core-core repulsion = 11465.449713 eV Total energy + Delta-G solvation = -2524.751739 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.88046 -37.66828 -36.13877 -33.87265 -31.63869 -30.42489 -26.87096 -25.24233 -22.96278 -22.42767 -20.70993 -19.18154 -17.97216 -16.73309 -15.89362 -15.50146 -15.01702 -14.52629 -13.99057 -13.76527 -13.60016 -12.92279 -12.47584 -12.16257 -11.78457 -11.60431 -11.54245 -11.20685 -11.04378 -10.70815 -10.48086 -10.38079 -10.20995 -10.15837 -9.51285 -9.29008 -8.21098 -7.96579 -6.41354 -3.82257 3.18935 3.27422 3.33249 3.56960 3.88964 3.91018 4.23783 4.77619 4.87088 4.94411 5.19893 5.22392 5.34560 5.41774 5.52713 5.59548 5.62800 5.78394 5.83662 5.94640 6.01687 6.04214 6.24422 6.32466 6.53522 7.53949 7.55993 8.06659 8.62243 9.18389 9.53222 10.05380 10.76430 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.062768 B = 0.005858 C = 0.005591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.980352 B = 4778.766987 C = 5006.608002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.079 3.921 3 H 0.070 0.930 4 O -0.352 6.352 5 C 0.089 3.911 6 C -0.147 4.147 7 C -0.177 4.177 8 C -0.177 4.177 9 C 0.444 3.556 10 O -0.575 6.575 11 N -0.560 5.560 12 C -0.299 4.299 13 H 0.104 0.896 14 C 0.023 3.977 15 N -0.902 5.902 16 Si 0.931 3.069 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.269 1.269 20 H 0.056 0.944 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.050 0.950 24 H 0.047 0.953 25 H 0.114 0.886 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.392 0.608 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.661 3.078 -12.802 13.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.018 3.982 3 H 0.088 0.912 4 O -0.270 6.270 5 C 0.012 3.988 6 C -0.165 4.165 7 C -0.214 4.214 8 C -0.214 4.214 9 C 0.229 3.771 10 O -0.458 6.458 11 N -0.198 5.198 12 C -0.429 4.429 13 H 0.121 0.879 14 C -0.179 4.179 15 N -0.544 5.544 16 Si 0.758 3.242 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.194 1.194 20 H 0.075 0.925 21 H 0.086 0.914 22 H 0.091 0.909 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.132 0.868 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.226 0.774 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.258 2.273 -12.705 12.909 hybrid contribution -0.100 0.484 0.851 0.984 sum -0.358 2.757 -11.855 12.176 Atomic orbital electron populations 1.22216 0.94778 1.03297 1.02143 1.21849 0.94212 0.95775 0.86408 0.91225 1.88041 1.86598 1.33654 1.18740 1.22038 0.98730 0.92107 0.85902 1.22117 1.00177 1.01070 0.93182 1.23050 0.90969 1.03552 1.03848 1.22961 1.02884 1.00983 0.94619 1.19644 0.85785 0.87744 0.83931 1.90535 1.44278 1.24913 1.86092 1.41789 1.49731 1.24145 1.04110 1.19723 1.32464 1.07530 0.83141 0.87859 1.25256 0.97060 0.96317 0.99221 1.69610 1.40167 1.19381 1.25194 0.85839 0.78372 0.79725 0.80258 1.20385 1.20904 1.19366 0.92510 0.91444 0.90890 0.93225 0.93451 0.86793 0.88693 0.88697 0.88620 0.88833 0.77405 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 9.48 37.16 0.35 -2.38 16 2 C 0.08 1.54 3.13 -27.88 -0.09 1.45 16 3 H 0.07 1.19 7.79 -51.93 -0.40 0.79 16 4 O -0.35 -6.91 9.53 -55.09 -0.52 -7.43 16 5 C 0.09 1.30 6.03 37.16 0.22 1.53 16 6 C -0.15 -1.91 6.06 -90.62 -0.55 -2.46 16 7 C -0.18 -2.00 10.18 -26.73 -0.27 -2.27 16 8 C -0.18 -1.76 10.25 -26.73 -0.27 -2.03 16 9 C 0.44 11.20 7.13 -10.99 -0.08 11.12 16 10 O -0.57 -16.95 16.08 -14.31 -0.23 -17.18 16 11 N -0.56 -14.57 5.25 -10.96 -0.06 -14.62 16 12 C -0.30 -8.50 9.68 -14.93 -0.14 -8.64 16 13 H 0.10 3.08 7.16 -52.48 -0.38 2.71 16 14 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 15 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 16 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H 0.06 0.76 7.87 -51.93 -0.41 0.35 16 21 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 22 H 0.07 1.17 7.92 -51.93 -0.41 0.75 16 23 H 0.05 0.63 7.87 -51.93 -0.41 0.22 16 24 H 0.05 0.66 7.82 -51.93 -0.41 0.25 16 25 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 26 H 0.09 1.05 8.03 -51.93 -0.42 0.63 16 27 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.39 9.61 7.68 -40.82 -0.31 9.30 16 31 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 273.37 15.07 4.12 4.12 Total: -1.00 -32.22 273.37 -6.31 -38.53 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -4.39 Total: 7.45 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -0.92 Total: -3.16 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.67 Total: -38.48 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.75 Total: -24.62 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.22 -6.31 -38.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308344181.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.049 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds