Wall clock time and date at job start Sun Mar 29 2020 21:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 O 1.42895 * 109.47036 * 239.99631 * 2 1 3 5 5 C 1.42902 * 113.99750 * 90.00531 * 4 2 1 6 6 C 1.53002 * 109.46999 * 179.97438 * 5 4 2 7 7 C 1.52998 * 117.49767 * 243.61820 * 6 5 4 8 8 C 1.53001 * 60.00165 * 252.51178 * 7 6 5 9 9 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 10 10 O 1.21289 * 120.00012 * 115.00189 * 9 2 1 11 11 N 1.34778 * 119.99817 * 295.00053 * 9 2 1 12 12 C 1.37100 * 119.99563 * 180.02562 * 11 9 2 13 13 H 1.08004 * 120.00645 * 359.97438 * 12 11 9 14 14 C 1.38952 * 119.99843 * 180.02562 * 12 11 9 15 15 N 1.31409 * 120.00003 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00149 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47172 * 89.99891 * 16 14 12 18 18 H 1.48499 * 109.47095 * 209.99734 * 16 14 12 19 19 H 1.48496 * 109.46828 * 329.99569 * 16 14 12 20 20 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 23 23 H 1.09004 * 109.46841 * 299.99499 * 5 4 2 24 24 H 1.08997 * 109.47617 * 59.99620 * 5 4 2 25 25 H 1.08998 * 115.54741 * 29.33232 * 6 5 4 26 26 H 1.08998 * 117.49871 * 359.97438 * 7 6 5 27 27 H 1.09000 * 117.49690 * 145.02476 * 7 6 5 28 28 H 1.08998 * 117.50138 * 252.51213 * 8 7 6 29 29 H 1.09006 * 117.49959 * 107.48791 * 8 7 6 30 30 H 0.96996 * 120.00289 * 359.97438 * 11 9 2 31 31 H 0.97000 * 120.00057 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2002 0.1829 -2.2940 6 6 2.7092 -0.6407 -3.4787 7 6 4.1061 -0.3198 -4.0139 8 6 2.8681 0.0761 -4.8211 9 6 2.0323 -0.7104 1.2305 10 8 2.6530 -1.7467 1.1215 11 7 1.7918 -0.1941 2.4520 12 6 2.2492 -0.8402 3.5714 13 1 2.8019 -1.7630 3.4744 14 6 2.0009 -0.3082 4.8308 15 7 1.3280 0.8143 4.9489 16 14 2.6234 -1.1888 6.3561 17 1 3.9845 -0.6979 6.6902 18 1 1.7068 -0.9183 7.4926 19 1 2.6739 -2.6503 6.0979 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.2539 0.6546 -2.5588 24 1 2.9320 0.9513 -2.0450 25 1 2.3889 -1.6824 -3.4993 26 1 4.6624 0.4783 -3.5223 27 1 4.7053 -1.1506 -4.3866 28 1 2.6529 -0.4941 -5.7247 29 1 2.6100 1.1345 -4.8601 30 1 1.2958 0.6349 2.5391 31 1 1.1549 1.1859 5.8280 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308344181.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:11 Heat of formation + Delta-G solvation = -87.972969 kcal Electronic energy + Delta-G solvation = -13991.129189 eV Core-core repulsion = 11465.449713 eV Total energy + Delta-G solvation = -2525.679476 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.58797 -39.04771 -37.40995 -35.98221 -33.56723 -32.05466 -28.00297 -27.23812 -24.61312 -23.23908 -21.76793 -21.01057 -20.03359 -18.17602 -17.55434 -16.87738 -16.58739 -16.16079 -15.59050 -15.34167 -15.07555 -14.53338 -13.89739 -13.56784 -13.50082 -13.16613 -12.93228 -12.53757 -12.45367 -12.34923 -12.12975 -11.93693 -11.56568 -11.37386 -11.23130 -10.61277 -10.12650 -10.06414 -8.49908 -5.99714 1.36935 1.41633 1.54544 1.96037 2.18936 2.45123 2.92084 3.15725 3.34294 3.87863 3.93624 3.98206 4.13971 4.18239 4.29873 4.36867 4.52523 4.69588 4.74177 4.78094 4.84889 5.01413 5.20152 5.23305 5.26608 5.38184 5.90858 6.25136 6.57322 7.08072 7.48125 8.04218 8.67274 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.062768 B = 0.005858 C = 0.005591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.980352 B = 4778.766987 C = 5006.608002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.088 3.912 3 H 0.097 0.903 4 O -0.386 6.386 5 C 0.084 3.916 6 C -0.177 4.177 7 C -0.186 4.186 8 C -0.147 4.147 9 C 0.433 3.567 10 O -0.628 6.628 11 N -0.561 5.561 12 C -0.340 4.340 13 H 0.077 0.923 14 C -0.007 4.007 15 N -0.916 5.916 16 Si 0.995 3.005 17 H -0.269 1.269 18 H -0.267 1.267 19 H -0.274 1.274 20 H 0.096 0.904 21 H 0.050 0.950 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.399 0.601 31 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.172 4.426 -13.387 14.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.027 3.973 3 H 0.115 0.885 4 O -0.305 6.305 5 C 0.008 3.992 6 C -0.195 4.195 7 C -0.223 4.223 8 C -0.183 4.183 9 C 0.220 3.780 10 O -0.515 6.515 11 N -0.199 5.199 12 C -0.469 4.469 13 H 0.095 0.905 14 C -0.208 4.208 15 N -0.556 5.556 16 Si 0.818 3.182 17 H -0.195 1.195 18 H -0.192 1.192 19 H -0.199 1.199 20 H 0.115 0.885 21 H 0.069 0.931 22 H 0.094 0.906 23 H 0.093 0.907 24 H 0.071 0.929 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.234 0.766 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.791 3.665 -13.302 13.820 hybrid contribution 0.075 0.084 0.988 0.994 sum -0.716 3.748 -12.314 12.892 Atomic orbital electron populations 1.22167 0.92243 1.02909 1.04234 1.21732 0.95911 0.95690 0.83959 0.88536 1.88008 1.86929 1.35738 1.19798 1.22322 1.00292 0.91975 0.84635 1.22115 1.01963 1.00695 0.94710 1.23157 0.90908 1.03894 1.04305 1.23075 1.00223 1.01748 0.93291 1.20789 0.84515 0.87273 0.85383 1.90488 1.46517 1.27401 1.87092 1.41813 1.49671 1.24200 1.04206 1.19681 1.34481 1.07840 0.84913 0.90520 1.26047 0.96513 0.96845 1.01379 1.69657 1.39727 1.19784 1.26449 0.84906 0.78382 0.78167 0.76740 1.19471 1.19159 1.19920 0.88548 0.93090 0.90572 0.90732 0.92858 0.88420 0.88618 0.88294 0.86972 0.87135 0.76642 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.91 9.48 71.98 0.68 -4.23 16 2 C 0.09 3.36 3.13 29.85 0.09 3.46 16 3 H 0.10 3.12 7.79 -2.39 -0.02 3.11 16 4 O -0.39 -15.02 9.53 -129.99 -1.24 -16.26 16 5 C 0.08 2.30 6.03 71.98 0.43 2.74 16 6 C -0.18 -4.38 6.06 -10.79 -0.07 -4.45 16 7 C -0.19 -3.93 10.18 30.59 0.31 -3.62 16 8 C -0.15 -2.48 10.25 30.60 0.31 -2.17 16 9 C 0.43 22.37 7.13 87.66 0.63 23.00 16 10 O -0.63 -38.63 16.08 15.93 0.26 -38.37 16 11 N -0.56 -29.77 5.25 -306.98 -1.61 -31.38 16 12 C -0.34 -19.79 9.68 84.04 0.81 -18.98 16 13 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 14 C -0.01 -0.40 5.50 84.93 0.47 0.07 16 15 N -0.92 -49.13 13.05 21.66 0.28 -48.85 16 16 Si 0.99 43.09 29.55 68.60 2.03 45.12 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 18 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 20 H 0.10 2.24 7.87 -2.39 -0.02 2.22 16 21 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.08 2.31 7.92 -2.39 -0.02 2.29 16 23 H 0.07 1.64 7.87 -2.38 -0.02 1.62 16 24 H 0.05 1.38 7.82 -2.39 -0.02 1.36 16 25 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 26 H 0.10 1.99 8.03 -2.39 -0.02 1.97 16 27 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.11 1.52 8.14 -2.38 -0.02 1.51 16 30 H 0.40 19.65 7.68 -92.71 -0.71 18.94 16 31 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -70.89 273.37 3.80 -67.09 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.41 Total: 26.84 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 3.68 Total: -4.19 kcal Atomic # 7 Polarization: -78.90 SS G_CDS: -1.33 Total: -80.23 kcal Atomic # 8 Polarization: -53.65 SS G_CDS: -0.98 Total: -54.63 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -70.89 3.80 -67.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308344181.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.886 kcal (2) G-P(sol) polarization free energy of solvation -70.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds