Wall clock time and date at job start Sun Mar 29 2020 22:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47040 * 2 1 4 4 C 1.53002 * 109.47040 * 179.97438 * 3 2 1 5 5 H 1.08991 * 109.50955 * 54.99818 * 4 3 2 6 6 C 1.53103 * 109.50584 * 175.08962 * 4 3 2 7 7 N 1.47019 * 109.25664 * 176.82579 * 6 4 3 8 8 C 1.46898 * 110.99901 * 177.60528 * 7 6 4 9 9 C 1.50692 * 109.46967 * 64.48141 * 8 7 6 10 10 H 1.08001 * 120.00535 * 4.85961 * 9 8 7 11 11 C 1.37884 * 120.00006 * 184.85520 * 9 8 7 12 12 N 1.31515 * 120.00057 * 180.02562 * 11 9 8 13 13 Si 1.86806 * 119.99715 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47250 * 89.99839 * 13 11 9 15 15 H 1.48497 * 109.46895 * 209.99771 * 13 11 9 16 16 H 1.48496 * 109.47140 * 329.99776 * 13 11 9 17 17 C 1.47011 * 110.75468 * 301.38491 * 7 6 4 18 18 C 1.53102 * 109.25962 * 58.61093 * 17 7 6 19 19 O 1.43009 * 109.26070 * 303.15437 * 18 17 7 20 20 H 1.08997 * 109.47328 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47090 * 299.99955 * 1 2 3 22 22 H 1.08997 * 109.47060 * 59.99709 * 1 2 3 23 23 H 1.09000 * 109.47090 * 240.00045 * 2 1 3 24 24 H 1.08999 * 109.46825 * 119.99811 * 2 1 3 25 25 H 1.09010 * 109.47186 * 60.00045 * 3 2 1 26 26 H 1.08997 * 109.47431 * 300.00063 * 3 2 1 27 27 H 1.08994 * 109.50359 * 296.75688 * 6 4 3 28 28 H 1.08998 * 109.50952 * 56.89635 * 6 4 3 29 29 H 1.09008 * 109.46890 * 184.48539 * 8 7 6 30 30 H 1.09001 * 109.46811 * 304.47862 * 8 7 6 31 31 H 0.97004 * 119.99504 * 180.02562 * 12 11 9 32 32 H 1.09000 * 109.50580 * 178.55039 * 17 7 6 33 33 H 1.09001 * 109.50454 * 298.67840 * 17 7 6 34 34 H 1.09004 * 109.50031 * 63.09176 * 18 17 7 35 35 H 1.09002 * 109.50624 * 183.17365 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9343 0.8530 -0.8406 6 6 4.0813 2.8803 -0.1229 7 7 5.5494 2.8812 -0.0452 8 6 6.0848 4.2384 -0.2167 9 6 5.6316 5.1056 0.9293 10 1 5.0746 4.6725 1.7470 11 6 5.9282 6.4522 0.9341 12 7 5.5331 7.2089 1.9346 13 14 6.8911 7.2015 -0.4804 14 1 5.9486 7.6662 -1.5296 15 1 7.6854 8.3534 0.0169 16 1 7.8048 6.1805 -1.0529 17 6 6.0044 2.2916 1.2223 18 6 5.4737 0.8597 1.3324 19 8 4.0479 0.8753 1.2236 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9563 0.8901 26 1 1.6767 1.9563 -0.8899 27 1 3.7672 3.2972 -1.0797 28 1 3.6735 3.4826 0.6889 29 1 7.1740 4.1997 -0.2346 30 1 5.7206 4.6566 -1.1551 31 1 5.7415 8.1563 1.9377 32 1 7.0940 2.2789 1.2474 33 1 5.6274 2.8845 2.0556 34 1 5.8935 0.2533 0.5297 35 1 5.7613 0.4380 2.2956 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308397267.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:25 Heat of formation + Delta-G solvation = -58.578340 kcal Electronic energy + Delta-G solvation = -14841.384422 eV Core-core repulsion = 12452.812687 eV Total energy + Delta-G solvation = -2388.571735 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.12837 -35.55905 -34.58995 -32.33935 -30.86110 -28.71068 -26.75526 -24.73715 -22.74876 -21.65131 -20.62936 -19.44548 -16.89942 -16.14796 -15.63353 -14.73043 -14.41545 -14.30759 -14.25779 -13.70065 -13.09624 -12.86890 -12.42529 -12.19223 -11.96384 -11.60440 -11.25424 -11.10104 -10.93027 -10.77900 -10.59270 -10.48793 -10.20085 -10.12170 -9.87884 -9.52820 -8.97320 -8.62547 -7.28448 -6.13389 -4.13831 3.24965 3.32851 3.36642 4.18251 4.36595 4.72544 5.08382 5.15564 5.20703 5.24987 5.53351 5.62068 5.68114 5.71926 5.82240 5.83262 5.96390 5.99331 6.05784 6.16312 6.22031 6.38041 6.45713 6.54592 6.69270 6.80815 6.86090 7.02717 7.50690 7.64445 7.95760 7.99904 8.41145 8.89034 9.48877 10.99436 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.040310 B = 0.007528 C = 0.007022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.453393 B = 3718.545999 C = 3986.771425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.111 4.111 4 C 0.094 3.906 5 H 0.056 0.944 6 C 0.030 3.970 7 N -0.535 5.535 8 C 0.154 3.846 9 C -0.554 4.554 10 H 0.076 0.924 11 C 0.072 3.928 12 N -0.898 5.898 13 Si 0.880 3.120 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.264 1.264 17 C 0.022 3.978 18 C 0.066 3.934 19 O -0.386 6.386 20 H 0.050 0.950 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.029 0.971 30 H 0.025 0.975 31 H 0.264 0.736 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.540 -12.130 -4.392 13.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.149 4.149 4 C 0.036 3.964 5 H 0.074 0.926 6 C -0.099 4.099 7 N -0.258 5.258 8 C 0.027 3.973 9 C -0.592 4.592 10 H 0.094 0.906 11 C -0.130 4.130 12 N -0.536 5.536 13 Si 0.707 3.293 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.189 1.189 17 C -0.106 4.106 18 C -0.011 4.011 19 O -0.305 6.305 20 H 0.069 0.931 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.469 -12.302 -4.570 13.863 hybrid contribution 0.451 1.349 -0.157 1.431 sum -4.018 -10.952 -4.727 12.588 Atomic orbital electron populations 1.21783 0.96277 1.01155 1.01702 1.21459 0.95195 0.96897 1.02195 1.21608 0.93265 0.97229 1.02821 1.22206 0.93663 0.93779 0.86766 0.92566 1.22592 0.89813 0.95370 1.02102 1.62687 1.07874 1.23143 1.32134 1.20181 0.95569 0.84843 0.96662 1.21689 1.36838 0.93610 1.07072 0.90641 1.24980 0.95136 0.97132 0.95787 1.69933 1.46220 1.06178 1.31245 0.86784 0.80680 0.79111 0.82755 1.20176 1.21238 1.18886 1.22598 1.00218 0.94463 0.93348 1.22651 0.80990 0.96531 1.00945 1.87891 1.21159 1.82155 1.39274 0.93120 0.92763 0.92957 0.92462 0.91374 0.91110 0.90747 0.91036 0.92722 0.95294 0.95646 0.92638 0.90837 0.92619 0.93409 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.16 0.37 -1.20 16 2 C -0.12 -1.45 5.83 -26.73 -0.16 -1.60 16 3 C -0.11 -1.56 4.93 -26.73 -0.13 -1.69 16 4 C 0.09 1.56 2.80 -26.68 -0.07 1.49 16 5 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 6 C 0.03 0.60 4.66 -3.71 -0.02 0.58 16 7 N -0.53 -11.43 4.94 -235.75 -1.16 -12.60 16 8 C 0.15 3.75 4.21 -4.98 -0.02 3.73 16 9 C -0.55 -15.54 8.21 -34.44 -0.28 -15.82 16 10 H 0.08 2.32 6.05 -52.49 -0.32 2.01 16 11 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 12 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 13 Si 0.88 21.43 27.38 -169.99 -4.65 16.77 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.26 -6.20 6.68 56.52 0.38 -5.83 16 17 C 0.02 0.45 5.30 -3.71 -0.02 0.43 16 18 C 0.07 1.09 7.01 37.21 0.26 1.35 16 19 O -0.39 -6.85 10.01 -35.23 -0.35 -7.20 16 20 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.89 7.83 -51.93 -0.41 0.48 16 25 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.05 1.25 6.93 -51.93 -0.36 0.89 16 29 H 0.03 0.71 7.54 -51.92 -0.39 0.32 16 30 H 0.03 0.62 7.29 -51.93 -0.38 0.24 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.06 1.27 6.42 -51.93 -0.33 0.94 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 275.42 15.07 4.15 4.15 Total: -1.00 -30.20 275.42 -7.41 -37.61 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -6.00 Total: -1.31 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -0.17 Total: -10.76 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: -0.39 Total: -39.26 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.35 Total: -7.20 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.65 Total: 16.77 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.20 -7.41 -37.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308397267.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.970 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds