Wall clock time and date at job start Sun Mar 29 2020 22:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47291 * 2 1 4 4 C 1.52994 * 109.46930 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.54675 * 304.89093 * 4 3 2 6 6 C 1.53104 * 109.50657 * 184.78311 * 4 3 2 7 7 N 1.47003 * 109.25949 * 183.21911 * 6 4 3 8 8 C 1.46903 * 110.99880 * 182.39320 * 7 6 4 9 9 C 1.50694 * 109.47066 * 302.41073 * 8 7 6 10 10 H 1.08000 * 120.00563 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99902 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46985 * 179.97438 * 13 11 9 15 15 H 1.48494 * 109.47276 * 299.99832 * 13 11 9 16 16 H 1.48498 * 109.47150 * 60.00043 * 13 11 9 17 17 C 1.47019 * 110.75625 * 58.61760 * 7 6 4 18 18 C 1.53098 * 109.25359 * 301.38639 * 17 7 6 19 19 O 1.43011 * 109.26235 * 56.84486 * 18 17 7 20 20 H 1.08999 * 109.47199 * 299.99713 * 1 2 3 21 21 H 1.09004 * 109.47225 * 59.99863 * 1 2 3 22 22 H 1.08998 * 109.47282 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46581 * 240.00108 * 2 1 3 24 24 H 1.08995 * 109.47057 * 120.00282 * 2 1 3 25 25 H 1.08999 * 109.46765 * 60.00021 * 3 2 1 26 26 H 1.09004 * 109.47098 * 300.00215 * 3 2 1 27 27 H 1.09001 * 109.50397 * 63.28006 * 6 4 3 28 28 H 1.09003 * 109.50682 * 303.15397 * 6 4 3 29 29 H 1.09007 * 109.47052 * 182.40757 * 8 7 6 30 30 H 1.09003 * 109.46808 * 62.41450 * 8 7 6 31 31 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 32 32 H 1.09000 * 109.50443 * 61.31687 * 17 7 6 33 33 H 1.09002 * 109.50577 * 181.40576 * 17 7 6 34 34 H 1.09007 * 109.50330 * 176.78514 * 18 17 7 35 35 H 1.09004 * 109.50386 * 296.90885 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9342 0.8550 0.8434 6 6 4.0812 2.8805 0.1210 7 7 5.5492 2.8813 0.0435 8 6 6.0845 4.2390 0.2119 9 6 5.4968 5.1447 -0.8393 10 1 4.7961 4.7511 -1.5608 11 6 5.8546 6.4756 -0.8809 12 7 6.7083 6.9548 -0.0026 13 14 5.1266 7.5981 -2.1845 14 1 5.6677 8.9706 -2.0141 15 1 5.4843 7.0883 -3.5325 16 1 3.6487 7.6281 -2.0427 17 6 6.0044 2.2889 -1.2227 18 6 5.4739 0.8568 -1.3296 19 8 4.0480 0.8726 -1.2209 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8932 -0.5139 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 3.7669 3.2997 1.0768 28 1 3.6735 3.4810 -0.6922 29 1 7.1694 4.2173 0.1078 30 1 5.8220 4.6127 1.2017 31 1 6.9602 7.8911 -0.0321 32 1 5.6274 2.8799 -2.0574 33 1 7.0941 2.2770 -1.2480 34 1 5.7610 0.4332 -2.2921 35 1 5.8935 0.2522 -0.5255 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308397270.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:28 Heat of formation + Delta-G solvation = -62.404239 kcal Electronic energy + Delta-G solvation = -14832.870954 eV Core-core repulsion = 12444.133315 eV Total energy + Delta-G solvation = -2388.737639 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.07969 -35.46582 -34.57268 -32.37405 -30.83535 -28.30421 -26.47849 -24.77979 -22.72618 -21.85336 -20.64329 -19.49498 -16.47362 -16.12076 -15.56116 -14.69020 -14.51422 -14.35304 -14.24250 -13.52388 -13.06067 -12.88024 -12.48970 -11.96729 -11.77801 -11.35264 -11.20836 -11.03509 -10.92844 -10.79624 -10.59063 -10.50393 -10.28727 -10.08830 -9.79240 -9.62319 -8.92756 -8.45368 -7.24095 -6.05302 -4.14521 3.27401 3.32185 3.35013 4.20329 4.38777 4.79724 5.13111 5.16550 5.25262 5.26211 5.55268 5.64901 5.69939 5.75650 5.84187 5.84916 5.97334 6.01156 6.07816 6.21526 6.23463 6.38495 6.47638 6.58786 6.69920 6.81622 7.20407 7.48285 7.66885 7.86359 7.98273 8.20504 8.25898 8.95014 9.52351 11.00001 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.034429 B = 0.007808 C = 0.007064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.074032 B = 3585.346183 C = 3962.726565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.111 4.111 4 C 0.092 3.908 5 H 0.057 0.943 6 C 0.033 3.967 7 N -0.541 5.541 8 C 0.187 3.813 9 C -0.552 4.552 10 H 0.057 0.943 11 C 0.065 3.935 12 N -0.891 5.891 13 Si 0.890 3.110 14 H -0.286 1.286 15 H -0.277 1.277 16 H -0.277 1.277 17 C 0.024 3.976 18 C 0.065 3.935 19 O -0.387 6.387 20 H 0.052 0.948 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.031 0.969 30 H 0.032 0.968 31 H 0.263 0.737 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.166 -11.355 -0.376 13.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.149 4.149 4 C 0.034 3.966 5 H 0.075 0.925 6 C -0.096 4.096 7 N -0.266 5.266 8 C 0.061 3.939 9 C -0.591 4.591 10 H 0.075 0.925 11 C -0.137 4.137 12 N -0.529 5.529 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.202 1.202 16 H -0.202 1.202 17 C -0.105 4.105 18 C -0.012 4.012 19 O -0.307 6.307 20 H 0.071 0.929 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.999 -11.539 -0.062 13.496 hybrid contribution -0.366 1.510 -1.191 1.958 sum -7.365 -10.029 -1.253 12.506 Atomic orbital electron populations 1.21783 0.96316 1.01145 1.01660 1.21463 0.95147 0.96943 1.02214 1.21605 0.93379 0.97171 1.02713 1.22240 0.93535 0.94058 0.86755 0.92537 1.22556 0.90189 0.94854 1.01987 1.62757 1.07579 1.24681 1.31560 1.19759 0.95536 0.81803 0.96761 1.21713 1.26979 0.94807 1.15558 0.92485 1.24962 0.94868 0.98110 0.95792 1.69936 1.32891 1.14770 1.35340 0.86691 0.79536 0.79827 0.82200 1.21130 1.20246 1.20221 1.22558 1.00184 0.94357 0.93356 1.22652 0.80987 0.96667 1.00854 1.87873 1.21186 1.82114 1.39488 0.92937 0.92838 0.93125 0.91412 0.92411 0.90730 0.91283 0.90970 0.93205 0.95076 0.94978 0.92714 0.93491 0.90894 0.89575 0.93336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.16 0.37 -1.19 16 2 C -0.12 -1.46 5.83 -26.73 -0.16 -1.61 16 3 C -0.11 -1.56 4.93 -26.73 -0.13 -1.69 16 4 C 0.09 1.55 2.81 -26.68 -0.07 1.48 16 5 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 6 C 0.03 0.67 4.56 -3.71 -0.02 0.65 16 7 N -0.54 -11.98 4.94 -235.74 -1.16 -13.15 16 8 C 0.19 4.89 5.15 -4.98 -0.03 4.87 16 9 C -0.55 -15.36 7.66 -34.44 -0.26 -15.62 16 10 H 0.06 1.59 5.79 -52.49 -0.30 1.29 16 11 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 12 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 13 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 C 0.02 0.49 5.39 -3.71 -0.02 0.47 16 18 C 0.07 1.09 7.01 37.21 0.26 1.35 16 19 O -0.39 -6.88 10.01 -35.23 -0.35 -7.23 16 20 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.07 0.88 7.83 -51.93 -0.41 0.47 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 28 H 0.05 1.12 6.42 -51.93 -0.33 0.79 16 29 H 0.03 0.86 8.11 -51.92 -0.42 0.44 16 30 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.05 1.04 6.93 -51.93 -0.36 0.68 16 33 H 0.07 1.41 8.12 -51.93 -0.42 0.99 16 34 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 278.86 15.07 4.20 4.20 Total: -1.00 -29.41 278.86 -7.79 -37.20 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -6.03 Total: -2.49 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -0.16 Total: -9.55 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: -0.43 Total: -38.73 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.35 Total: -7.23 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.41 -7.79 -37.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308397270.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.204 kcal (2) G-P(sol) polarization free energy of solvation -29.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds