Wall clock time and date at job start Sun Mar 29 2020 22:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47291 * 2 1 4 4 C 1.52994 * 109.46930 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.54675 * 304.89093 * 4 3 2 6 6 C 1.53104 * 109.50657 * 184.78311 * 4 3 2 7 7 N 1.47003 * 109.25949 * 183.21911 * 6 4 3 8 8 C 1.46903 * 110.99880 * 182.39320 * 7 6 4 9 9 C 1.50694 * 109.47066 * 302.41073 * 8 7 6 10 10 H 1.08000 * 120.00563 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99902 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46985 * 179.97438 * 13 11 9 15 15 H 1.48494 * 109.47276 * 299.99832 * 13 11 9 16 16 H 1.48498 * 109.47150 * 60.00043 * 13 11 9 17 17 C 1.47019 * 110.75625 * 58.61760 * 7 6 4 18 18 C 1.53098 * 109.25359 * 301.38639 * 17 7 6 19 19 O 1.43011 * 109.26235 * 56.84486 * 18 17 7 20 20 H 1.08999 * 109.47199 * 299.99713 * 1 2 3 21 21 H 1.09004 * 109.47225 * 59.99863 * 1 2 3 22 22 H 1.08998 * 109.47282 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46581 * 240.00108 * 2 1 3 24 24 H 1.08995 * 109.47057 * 120.00282 * 2 1 3 25 25 H 1.08999 * 109.46765 * 60.00021 * 3 2 1 26 26 H 1.09004 * 109.47098 * 300.00215 * 3 2 1 27 27 H 1.09001 * 109.50397 * 63.28006 * 6 4 3 28 28 H 1.09003 * 109.50682 * 303.15397 * 6 4 3 29 29 H 1.09007 * 109.47052 * 182.40757 * 8 7 6 30 30 H 1.09003 * 109.46808 * 62.41450 * 8 7 6 31 31 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 32 32 H 1.09000 * 109.50443 * 61.31687 * 17 7 6 33 33 H 1.09002 * 109.50577 * 181.40576 * 17 7 6 34 34 H 1.09007 * 109.50330 * 176.78514 * 18 17 7 35 35 H 1.09004 * 109.50386 * 296.90885 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9342 0.8550 0.8434 6 6 4.0812 2.8805 0.1210 7 7 5.5492 2.8813 0.0435 8 6 6.0845 4.2390 0.2119 9 6 5.4968 5.1447 -0.8393 10 1 4.7961 4.7511 -1.5608 11 6 5.8546 6.4756 -0.8809 12 7 6.7083 6.9548 -0.0026 13 14 5.1266 7.5981 -2.1845 14 1 5.6677 8.9706 -2.0141 15 1 5.4843 7.0883 -3.5325 16 1 3.6487 7.6281 -2.0427 17 6 6.0044 2.2889 -1.2227 18 6 5.4739 0.8568 -1.3296 19 8 4.0480 0.8726 -1.2209 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8932 -0.5139 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 3.7669 3.2997 1.0768 28 1 3.6735 3.4810 -0.6922 29 1 7.1694 4.2173 0.1078 30 1 5.8220 4.6127 1.2017 31 1 6.9602 7.8911 -0.0321 32 1 5.6274 2.8799 -2.0574 33 1 7.0941 2.2770 -1.2480 34 1 5.7610 0.4332 -2.2921 35 1 5.8935 0.2522 -0.5255 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308397270.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:28 Heat of formation + Delta-G solvation = -82.037704 kcal Electronic energy + Delta-G solvation = -14833.722325 eV Core-core repulsion = 12444.133315 eV Total energy + Delta-G solvation = -2389.589009 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.59184 -37.11738 -35.77082 -34.48091 -32.11809 -30.08491 -28.01138 -26.51781 -24.32467 -23.36412 -21.81699 -21.16518 -18.59845 -17.45684 -17.20734 -16.43996 -16.07290 -15.81561 -15.35801 -15.33761 -14.71299 -14.14269 -13.85001 -13.60303 -13.19511 -13.07332 -12.85271 -12.62205 -12.53217 -12.23734 -12.20643 -11.90367 -11.82310 -11.71692 -11.47131 -11.14230 -10.65315 -10.43988 -9.14361 -8.21308 -6.40917 1.33774 1.34994 1.43634 2.33348 2.86358 3.03948 3.21987 3.85130 4.07401 4.17914 4.22585 4.33356 4.36009 4.47717 4.51107 4.67992 4.76130 4.81647 4.94981 5.00490 5.02334 5.10039 5.16970 5.17840 5.24929 5.32202 5.42098 5.53578 5.67816 5.95490 6.14457 6.27213 6.39609 6.77781 7.30500 8.81784 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.034429 B = 0.007808 C = 0.007064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.074032 B = 3585.346183 C = 3962.726565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.108 4.108 4 C 0.099 3.901 5 H 0.067 0.933 6 C 0.035 3.965 7 N -0.542 5.542 8 C 0.199 3.801 9 C -0.561 4.561 10 H 0.052 0.948 11 C 0.014 3.986 12 N -0.924 5.924 13 Si 0.957 3.043 14 H -0.278 1.278 15 H -0.271 1.271 16 H -0.270 1.270 17 C 0.023 3.977 18 C 0.072 3.928 19 O -0.394 6.394 20 H 0.058 0.942 21 H 0.050 0.950 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.023 0.977 29 H 0.008 0.992 30 H 0.007 0.993 31 H 0.267 0.733 32 H 0.021 0.979 33 H 0.075 0.925 34 H 0.117 0.883 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.335 -12.452 -0.985 15.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.146 4.146 4 C 0.042 3.958 5 H 0.085 0.915 6 C -0.094 4.094 7 N -0.266 5.266 8 C 0.073 3.927 9 C -0.600 4.600 10 H 0.071 0.929 11 C -0.186 4.186 12 N -0.563 5.563 13 Si 0.782 3.218 14 H -0.203 1.203 15 H -0.196 1.196 16 H -0.195 1.195 17 C -0.106 4.106 18 C -0.005 4.005 19 O -0.313 6.313 20 H 0.078 0.922 21 H 0.069 0.931 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.104 0.896 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.026 0.974 30 H 0.025 0.975 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.094 0.906 34 H 0.134 0.866 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.175 -12.658 -0.675 15.083 hybrid contribution 0.034 1.831 -0.970 2.073 sum -8.141 -10.826 -1.645 13.645 Atomic orbital electron populations 1.21760 0.94807 1.02181 1.01907 1.21411 0.96430 0.95152 1.02221 1.21626 0.91232 0.98875 1.02834 1.22266 0.95273 0.91363 0.86939 0.91493 1.22618 0.88771 0.97283 1.00755 1.62696 1.08837 1.22071 1.32956 1.19430 0.94167 0.84008 0.95122 1.21905 1.26916 0.95462 1.15744 0.92939 1.25811 0.95181 0.99668 0.97934 1.70050 1.34000 1.15325 1.36953 0.85620 0.78897 0.77879 0.79400 1.20274 1.19604 1.19523 1.22659 1.00503 0.96268 0.91147 1.22735 0.80399 0.94119 1.03221 1.87884 1.21751 1.81789 1.39888 0.92250 0.93082 0.91723 0.92269 0.91516 0.89559 0.92280 0.91254 0.95847 0.97397 0.97474 0.92423 0.96069 0.90635 0.86551 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.91 71.98 0.71 -1.97 16 2 C -0.11 -2.50 5.83 30.59 0.18 -2.32 16 3 C -0.11 -2.86 4.93 30.59 0.15 -2.71 16 4 C 0.10 3.22 2.81 30.63 0.09 3.30 16 5 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 6 C 0.03 1.41 4.56 86.32 0.39 1.80 16 7 N -0.54 -24.27 4.94 -899.76 -4.44 -28.71 16 8 C 0.20 10.79 5.15 85.55 0.44 11.23 16 9 C -0.56 -31.94 7.66 25.60 0.20 -31.75 16 10 H 0.05 2.99 5.79 -2.91 -0.02 2.97 16 11 C 0.01 0.79 5.46 84.66 0.46 1.26 16 12 N -0.92 -55.43 13.29 21.45 0.28 -55.14 16 13 Si 0.96 44.48 29.54 68.60 2.03 46.50 16 14 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 15 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 C 0.02 0.92 5.39 86.31 0.46 1.38 16 18 C 0.07 2.24 7.01 72.01 0.50 2.74 16 19 O -0.39 -13.24 10.01 -148.98 -1.49 -14.73 16 20 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 21 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.06 1.40 7.83 -2.38 -0.02 1.38 16 24 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 28 H 0.02 1.07 6.42 -2.39 -0.02 1.05 16 29 H 0.01 0.46 8.11 -2.38 -0.02 0.44 16 30 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 32 H 0.02 0.95 6.93 -2.39 -0.02 0.93 16 33 H 0.08 2.92 8.12 -2.39 -0.02 2.90 16 34 H 0.12 2.94 8.14 -2.38 -0.02 2.93 16 35 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -63.10 278.86 1.00 -62.10 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 1.03 Total: 7.01 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: 3.59 Total: -17.02 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -4.16 Total: -83.86 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -1.49 Total: -14.73 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -63.10 1.00 -62.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308397270.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.936 kcal (2) G-P(sol) polarization free energy of solvation -63.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds