Wall clock time and date at job start Sun Mar 29 2020 22:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00022 * 2 1 4 4 H 1.48508 * 109.46857 * 240.00042 * 3 2 1 5 5 H 1.48499 * 109.47335 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47117 * 120.00021 * 3 2 1 7 7 C 1.37871 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00325 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99857 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47067 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47360 * 180.02562 * 10 9 7 12 12 C 1.46897 * 111.00028 * 185.01557 * 11 10 9 13 13 H 1.08994 * 109.47379 * 329.96354 * 12 11 10 14 14 C 1.53005 * 109.47014 * 209.96461 * 12 11 10 15 15 C 1.52995 * 109.47435 * 65.00018 * 14 12 11 16 16 O 1.42901 * 109.47452 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47114 * 89.96695 * 12 11 10 18 18 C 1.52996 * 117.51602 * 346.33586 * 17 12 11 19 19 C 1.52996 * 117.50041 * 54.96709 * 17 12 11 20 20 H 0.97001 * 120.00005 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.46970 * 60.01188 * 9 7 2 22 22 H 1.08998 * 109.47359 * 300.00134 * 9 7 2 23 23 H 1.09004 * 109.47108 * 59.99987 * 10 9 7 24 24 H 1.08999 * 109.47233 * 300.00127 * 10 9 7 25 25 H 1.00895 * 111.00148 * 308.97747 * 11 10 9 26 26 H 1.09005 * 109.47055 * 185.00174 * 14 12 11 27 27 H 1.09006 * 109.46947 * 304.99889 * 14 12 11 28 28 H 1.08996 * 109.47302 * 300.00686 * 15 14 12 29 29 H 1.09005 * 109.46754 * 59.99650 * 15 14 12 30 30 H 0.96702 * 113.99732 * 180.02562 * 16 15 14 31 31 H 1.08996 * 115.55320 * 200.63776 * 17 12 11 32 32 H 1.09000 * 117.49986 * 214.97072 * 18 17 12 33 33 H 1.08997 * 117.50306 * 359.97438 * 18 17 12 34 34 H 1.09004 * 117.50125 * 359.97292 * 19 17 12 35 35 H 1.09003 * 117.50259 * 144.99835 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5107 -4.9342 -0.0012 12 6 2.4306 -6.0732 0.1187 13 1 3.3875 -5.8169 -0.3357 14 6 1.8350 -7.2873 -0.5971 15 6 1.7405 -6.9995 -2.0968 16 8 1.1848 -8.1336 -2.7654 17 6 2.6409 -6.4055 1.5973 18 6 2.1751 -5.3740 2.6268 19 6 1.3962 -6.6781 2.4441 20 1 -0.4850 0.8400 -0.0004 21 1 0.6242 -2.5567 -0.8904 22 1 0.6246 -2.5570 0.8896 23 1 2.8719 -3.6043 0.8895 24 1 2.8719 -3.6043 -0.8905 25 1 0.8166 -4.9514 0.7309 26 1 2.4739 -8.1552 -0.4332 27 1 0.8393 -7.4894 -0.2024 28 1 1.1018 -6.1316 -2.2607 29 1 2.7363 -6.7974 -2.4914 30 1 1.0959 -8.0217 -3.7218 31 1 3.5410 -6.9754 1.8277 32 1 2.7688 -5.2653 3.5345 33 1 1.7191 -4.4581 2.2508 34 1 0.4273 -6.6203 1.9480 35 1 1.4773 -7.4274 3.2316 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308397460.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:25 Heat of formation + Delta-G solvation = -40.654066 kcal Electronic energy + Delta-G solvation = -14401.996658 eV Core-core repulsion = 12014.202178 eV Total energy + Delta-G solvation = -2387.794480 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.02358 -36.61922 -34.45288 -32.95843 -31.54071 -28.51772 -25.65260 -23.71498 -22.47119 -21.50397 -20.54843 -19.33190 -17.10840 -16.43737 -16.29179 -15.42660 -14.67721 -14.47100 -13.70175 -13.63930 -13.29102 -12.87166 -12.29471 -11.86095 -11.66000 -11.36206 -11.28098 -11.04259 -10.92414 -10.76775 -10.53770 -10.14709 -10.03341 -9.84496 -9.73018 -9.32343 -9.16957 -8.36732 -7.82686 -6.00853 -4.03622 3.32526 3.37081 3.39286 3.87266 4.37902 4.42294 4.68965 4.98897 5.05939 5.11561 5.25454 5.35093 5.41926 5.62185 5.69817 5.77541 5.84749 6.02686 6.09213 6.21048 6.27406 6.29191 6.36726 6.43799 6.46250 6.96450 7.48243 7.70702 7.75615 7.82298 7.94267 8.06384 8.42213 9.03417 9.60333 11.10483 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031356 B = 0.006721 C = 0.005939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.748772 B = 4164.975982 C = 4713.851648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.062 3.938 11 N -0.687 5.687 12 C 0.115 3.885 13 H 0.078 0.922 14 C -0.097 4.097 15 C 0.078 3.922 16 O -0.584 6.584 17 C -0.179 4.179 18 C -0.185 4.185 19 C -0.180 4.180 20 H 0.261 0.739 21 H 0.024 0.976 22 H 0.012 0.988 23 H 0.023 0.977 24 H 0.057 0.943 25 H 0.338 0.662 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.375 0.625 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.989 -13.017 0.405 13.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.066 4.066 11 N -0.319 5.319 12 C 0.004 3.996 13 H 0.096 0.904 14 C -0.135 4.135 15 C 0.001 3.999 16 O -0.389 6.389 17 C -0.199 4.199 18 C -0.222 4.222 19 C -0.217 4.217 20 H 0.071 0.929 21 H 0.042 0.958 22 H 0.031 0.969 23 H 0.041 0.959 24 H 0.075 0.925 25 H 0.158 0.842 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.221 0.779 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.127 0.873 34 H 0.114 0.886 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.785 -13.149 0.329 13.686 hybrid contribution 0.812 1.296 0.473 1.601 sum 4.597 -11.853 0.802 12.738 Atomic orbital electron populations 1.69961 1.06029 1.26719 1.50550 1.24998 0.94833 0.99200 0.95280 0.86654 0.79572 0.83145 0.78593 1.20238 1.21268 1.20289 1.21127 0.92937 0.90996 1.51004 0.92811 1.19079 0.94017 0.90619 0.97570 1.22254 0.97178 0.88275 0.98914 1.60791 1.15718 1.02404 1.53030 1.21044 0.96252 0.91293 0.90995 0.90414 1.21382 1.01825 0.96916 0.93425 1.22177 0.96939 0.88106 0.92664 1.86417 1.86458 1.41681 1.24345 1.23021 0.98674 1.04096 0.94135 1.23221 1.04041 0.94479 1.00492 1.22918 0.96301 0.99729 1.02739 0.92926 0.95761 0.96949 0.95905 0.92462 0.84158 0.91942 0.91346 0.91668 0.94534 0.77871 0.88176 0.89041 0.87305 0.88551 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.63 5.18 -27.88 -0.14 0.49 16 10 C 0.06 1.27 4.56 -3.82 -0.02 1.25 16 11 N -0.69 -11.87 5.55 -106.73 -0.59 -12.46 16 12 C 0.12 1.66 2.45 -67.71 -0.17 1.49 16 13 H 0.08 1.14 7.78 -51.93 -0.40 0.73 16 14 C -0.10 -1.32 5.09 -26.73 -0.14 -1.45 16 15 C 0.08 1.07 6.93 37.15 0.26 1.33 16 16 O -0.58 -7.66 13.66 -35.23 -0.48 -8.14 16 17 C -0.18 -2.36 5.79 -90.62 -0.52 -2.89 16 18 C -0.19 -2.61 8.94 -26.73 -0.24 -2.85 16 19 C -0.18 -2.24 9.44 -26.73 -0.25 -2.50 16 20 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 21 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.02 0.46 6.70 -51.93 -0.35 0.12 16 24 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.34 5.87 5.69 -39.29 -0.22 5.65 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.97 7.82 -51.93 -0.41 0.56 16 28 H 0.07 0.99 7.75 -51.93 -0.40 0.58 16 29 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.38 3.23 9.12 45.56 0.42 3.64 16 31 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.11 1.81 5.11 -51.93 -0.27 1.55 16 34 H 0.10 1.23 7.38 -51.93 -0.38 0.85 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 284.86 15.07 4.29 4.29 Total: -1.00 -30.35 284.86 -7.64 -37.99 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -4.94 Total: 6.41 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -1.63 Total: -18.58 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.14 Total: -38.57 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.48 Total: -8.14 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.35 -7.64 -37.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308397460.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.666 kcal (2) G-P(sol) polarization free energy of solvation -30.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds