Wall clock time and date at job start Sun Mar 29 2020 22:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00022 * 2 1 4 4 H 1.48508 * 109.46857 * 240.00042 * 3 2 1 5 5 H 1.48499 * 109.47335 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47117 * 120.00021 * 3 2 1 7 7 C 1.37871 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00325 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99857 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47067 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47360 * 180.02562 * 10 9 7 12 12 C 1.46897 * 111.00028 * 185.01557 * 11 10 9 13 13 H 1.08994 * 109.47379 * 329.96354 * 12 11 10 14 14 C 1.53005 * 109.47014 * 209.96461 * 12 11 10 15 15 C 1.52995 * 109.47435 * 65.00018 * 14 12 11 16 16 O 1.42901 * 109.47452 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47114 * 89.96695 * 12 11 10 18 18 C 1.52996 * 117.51602 * 346.33586 * 17 12 11 19 19 C 1.52996 * 117.50041 * 54.96709 * 17 12 11 20 20 H 0.97001 * 120.00005 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.46970 * 60.01188 * 9 7 2 22 22 H 1.08998 * 109.47359 * 300.00134 * 9 7 2 23 23 H 1.09004 * 109.47108 * 59.99987 * 10 9 7 24 24 H 1.08999 * 109.47233 * 300.00127 * 10 9 7 25 25 H 1.00895 * 111.00148 * 308.97747 * 11 10 9 26 26 H 1.09005 * 109.47055 * 185.00174 * 14 12 11 27 27 H 1.09006 * 109.46947 * 304.99889 * 14 12 11 28 28 H 1.08996 * 109.47302 * 300.00686 * 15 14 12 29 29 H 1.09005 * 109.46754 * 59.99650 * 15 14 12 30 30 H 0.96702 * 113.99732 * 180.02562 * 16 15 14 31 31 H 1.08996 * 115.55320 * 200.63776 * 17 12 11 32 32 H 1.09000 * 117.49986 * 214.97072 * 18 17 12 33 33 H 1.08997 * 117.50306 * 359.97438 * 18 17 12 34 34 H 1.09004 * 117.50125 * 359.97292 * 19 17 12 35 35 H 1.09003 * 117.50259 * 144.99835 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5107 -4.9342 -0.0012 12 6 2.4306 -6.0732 0.1187 13 1 3.3875 -5.8169 -0.3357 14 6 1.8350 -7.2873 -0.5971 15 6 1.7405 -6.9995 -2.0968 16 8 1.1848 -8.1336 -2.7654 17 6 2.6409 -6.4055 1.5973 18 6 2.1751 -5.3740 2.6268 19 6 1.3962 -6.6781 2.4441 20 1 -0.4850 0.8400 -0.0004 21 1 0.6242 -2.5567 -0.8904 22 1 0.6246 -2.5570 0.8896 23 1 2.8719 -3.6043 0.8895 24 1 2.8719 -3.6043 -0.8905 25 1 0.8166 -4.9514 0.7309 26 1 2.4739 -8.1552 -0.4332 27 1 0.8393 -7.4894 -0.2024 28 1 1.1018 -6.1316 -2.2607 29 1 2.7363 -6.7974 -2.4914 30 1 1.0959 -8.0217 -3.7218 31 1 3.5410 -6.9754 1.8277 32 1 2.7688 -5.2653 3.5345 33 1 1.7191 -4.4581 2.2508 34 1 0.4273 -6.6203 1.9480 35 1 1.4773 -7.4274 3.2316 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308397460.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:25 Heat of formation + Delta-G solvation = -62.374394 kcal Electronic energy + Delta-G solvation = -14402.938522 eV Core-core repulsion = 12014.202178 eV Total energy + Delta-G solvation = -2388.736344 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.21881 -37.65400 -36.10754 -34.67475 -33.05731 -30.26839 -27.04380 -25.51751 -23.56733 -22.62940 -22.33018 -20.50294 -18.51894 -18.09500 -17.64261 -16.67698 -16.49553 -15.72258 -15.15244 -14.99080 -14.73572 -14.33535 -13.94766 -13.33832 -13.11046 -12.85859 -12.71245 -12.55288 -12.39717 -12.32418 -11.96088 -11.79686 -11.39012 -11.28360 -11.18118 -10.82600 -10.77611 -10.56345 -9.26025 -8.20370 -6.31838 1.40080 1.43076 1.51039 2.40317 2.82174 3.13139 3.33625 3.38972 3.89767 3.96927 4.05559 4.18391 4.34144 4.45392 4.56002 4.64663 4.68444 4.75400 4.78033 4.96355 5.04668 5.08388 5.16851 5.20404 5.22744 5.27513 5.47175 5.68498 5.80103 6.15225 6.30766 6.52571 6.85477 6.93325 7.37569 8.91504 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031356 B = 0.006721 C = 0.005939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.748772 B = 4164.975982 C = 4713.851648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.033 3.967 10 C 0.084 3.916 11 N -0.689 5.689 12 C 0.116 3.884 13 H 0.080 0.920 14 C -0.091 4.091 15 C 0.081 3.919 16 O -0.595 6.595 17 C -0.175 4.175 18 C -0.201 4.201 19 C -0.167 4.167 20 H 0.264 0.736 21 H -0.008 1.008 22 H -0.011 1.011 23 H 0.025 0.975 24 H 0.056 0.944 25 H 0.337 0.663 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.394 0.606 31 H 0.122 0.878 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.501 -13.757 0.627 14.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.045 4.045 11 N -0.321 5.321 12 C 0.006 3.994 13 H 0.098 0.902 14 C -0.129 4.129 15 C 0.004 3.996 16 O -0.403 6.403 17 C -0.195 4.195 18 C -0.238 4.238 19 C -0.204 4.204 20 H 0.072 0.928 21 H 0.011 0.989 22 H 0.007 0.993 23 H 0.044 0.956 24 H 0.075 0.925 25 H 0.157 0.843 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.243 0.757 31 H 0.140 0.860 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.305 -13.912 0.535 14.899 hybrid contribution 0.292 1.470 0.375 1.545 sum 5.597 -12.442 0.910 13.673 Atomic orbital electron populations 1.70102 1.07828 1.27838 1.51435 1.25962 0.95734 1.03334 0.94644 0.85498 0.78262 0.78072 0.79196 1.19155 1.20859 1.19146 1.21576 0.93511 0.92240 1.50890 0.92155 1.18913 0.94281 0.92473 0.94808 1.21836 0.95681 0.88073 0.98881 1.60711 1.16142 1.02022 1.53266 1.21100 0.95625 0.90360 0.92358 0.90220 1.21320 1.01631 0.96780 0.93184 1.22082 0.97007 0.87546 0.93001 1.86369 1.86433 1.41334 1.26175 1.23035 0.99917 1.03681 0.92824 1.23141 1.05290 0.93979 1.01415 1.22978 0.95670 0.98918 1.02788 0.92769 0.98918 0.99302 0.95642 0.92536 0.84312 0.90269 0.92125 0.93819 0.93467 0.75699 0.86004 0.87919 0.90409 0.89234 0.86894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.15 13.29 21.45 0.28 -56.86 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 44.28 29.54 68.60 2.03 46.30 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.54 -31.05 9.11 25.60 0.23 -30.81 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.74 5.18 29.85 0.15 1.89 16 10 C 0.08 3.48 4.56 86.30 0.39 3.88 16 11 N -0.69 -23.93 5.55 -491.58 -2.73 -26.66 16 12 C 0.12 3.17 2.45 44.92 0.11 3.28 16 13 H 0.08 2.18 7.78 -2.39 -0.02 2.16 16 14 C -0.09 -2.30 5.09 30.59 0.16 -2.14 16 15 C 0.08 2.11 6.93 71.98 0.50 2.61 16 16 O -0.59 -14.61 13.66 -148.98 -2.04 -16.65 16 17 C -0.17 -4.24 5.79 -10.80 -0.06 -4.30 16 18 C -0.20 -5.49 8.94 30.59 0.27 -5.21 16 19 C -0.17 -3.84 9.44 30.59 0.29 -3.56 16 20 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 21 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 22 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 23 H 0.03 1.04 6.70 -2.39 -0.02 1.03 16 24 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.34 11.95 5.69 -89.70 -0.51 11.44 16 26 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.06 1.63 7.82 -2.38 -0.02 1.61 16 28 H 0.04 1.31 7.75 -2.39 -0.02 1.29 16 29 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.39 6.13 9.12 -74.06 -0.68 5.46 16 31 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.08 2.64 5.11 -2.39 -0.01 2.63 16 34 H 0.09 2.20 7.38 -2.38 -0.02 2.18 16 35 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -65.06 284.86 -0.06 -65.12 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: -0.11 Total: 22.57 kcal Atomic # 6 Polarization: -36.34 SS G_CDS: 2.51 Total: -33.83 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -2.44 Total: -83.52 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -2.04 Total: -16.65 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -65.06 -0.06 -65.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308397460.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.748 kcal (2) G-P(sol) polarization free energy of solvation -65.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds