Wall clock time and date at job start Sun Mar 29 2020 22:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 113.99969 * 2 1 4 4 C 1.53006 * 109.47354 * 175.18089 * 3 2 1 5 5 C 1.50691 * 115.55235 * 65.54753 * 4 3 2 6 6 O 1.21298 * 120.00331 * 254.30670 * 5 4 3 7 7 N 1.34778 * 120.00146 * 74.29938 * 5 4 3 8 8 C 1.46507 * 119.99871 * 356.71699 * 7 5 4 9 9 C 1.37098 * 120.00436 * 176.71384 * 7 5 4 10 10 H 1.08001 * 119.99612 * 358.65125 * 9 7 5 11 11 C 1.38947 * 120.00371 * 178.65450 * 9 7 5 12 12 N 1.31419 * 119.99780 * 7.49308 * 11 9 7 13 13 Si 1.86795 * 120.00141 * 187.49200 * 11 9 7 14 14 H 1.48503 * 109.47298 * 90.00105 * 13 11 9 15 15 H 1.48502 * 109.47138 * 209.99797 * 13 11 9 16 16 H 1.48498 * 109.47202 * 329.99876 * 13 11 9 17 17 C 1.52999 * 117.49265 * 279.88093 * 4 3 2 18 18 C 1.53002 * 117.49875 * 211.22124 * 4 3 2 19 19 H 1.08997 * 109.47612 * 300.00182 * 1 2 3 20 20 H 1.08997 * 109.47275 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.46812 * 60.00251 * 1 2 3 22 22 H 1.09004 * 109.47292 * 295.17826 * 3 2 1 23 23 H 1.08996 * 109.47534 * 55.17970 * 3 2 1 24 24 H 1.09003 * 109.46811 * 359.57583 * 8 7 5 25 25 H 1.08997 * 109.47099 * 119.57588 * 8 7 5 26 26 H 1.08998 * 109.46643 * 239.57979 * 8 7 5 27 27 H 0.96993 * 119.99543 * 180.02562 * 12 11 9 28 28 H 1.08995 * 117.50264 * 359.97438 * 17 4 3 29 29 H 1.09004 * 117.49683 * 145.02521 * 17 4 3 30 30 H 1.08998 * 117.50068 * 214.97491 * 18 4 3 31 31 H 1.09004 * 117.49713 * 359.97438 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5308 1.1868 0.1212 5 6 4.2267 0.5333 -1.0448 6 8 4.6514 -0.5982 -0.9411 7 7 4.3773 1.2061 -2.2029 8 6 3.8016 2.5450 -2.3525 9 6 5.0692 0.6376 -3.2410 10 1 5.5122 -0.3404 -3.1233 11 6 5.2005 1.3194 -4.4445 12 7 4.7918 2.5646 -4.5422 13 14 5.9579 0.4663 -5.9236 14 1 4.8908 -0.2066 -6.7071 15 1 6.6409 1.4705 -6.7782 16 1 6.9441 -0.5432 -5.4615 17 6 4.1115 0.9456 1.5160 18 6 4.2717 2.3124 0.8456 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 1.7585 1.8152 -0.9300 23 1 1.6219 1.8761 0.8436 24 1 3.2867 2.8238 -1.4331 25 1 4.5972 3.2619 -2.5552 26 1 3.0926 2.5451 -3.1803 27 1 4.8831 3.0405 -5.3824 28 1 3.4104 0.8719 2.3473 29 1 4.9973 0.3147 1.5902 30 1 5.2627 2.5801 0.4791 31 1 3.6759 3.1378 1.2355 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308404313.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:20 Heat of formation + Delta-G solvation = -35.626195 kcal Electronic energy + Delta-G solvation = -14843.137164 eV Core-core repulsion = 12319.727614 eV Total energy + Delta-G solvation = -2523.409550 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.26510 -37.22184 -35.64947 -34.49785 -31.40533 -28.04154 -26.43623 -25.27950 -24.59206 -22.00182 -21.76760 -18.20273 -16.88020 -16.41787 -15.69800 -15.46351 -15.01531 -14.40387 -14.03089 -13.73924 -13.37103 -12.80181 -12.19555 -11.79263 -11.59119 -11.35897 -11.17107 -11.04251 -10.92309 -10.70009 -10.32601 -10.20945 -10.02309 -9.65807 -9.28325 -8.97201 -8.23769 -7.77638 -6.18115 -3.73165 3.19834 3.27805 3.33882 3.75244 3.94373 4.15990 4.48006 4.86762 5.12086 5.15619 5.35859 5.45458 5.54579 5.56228 5.60292 5.79281 5.82818 5.96463 6.06986 6.28427 6.35018 6.52059 6.57135 7.16127 7.45461 7.49128 7.62377 8.15143 8.57524 9.27143 9.53923 10.09979 10.76371 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036038 B = 0.009552 C = 0.009080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.776190 B = 2930.692789 C = 3082.865301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.376 6.376 3 C 0.105 3.895 4 C -0.135 4.135 5 C 0.481 3.519 6 O -0.587 6.587 7 N -0.446 5.446 8 C 0.117 3.883 9 C -0.296 4.296 10 H 0.103 0.897 11 C 0.024 3.976 12 N -0.890 5.890 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.270 1.270 17 C -0.144 4.144 18 C -0.159 4.159 19 H 0.035 0.965 20 H 0.083 0.917 21 H 0.039 0.961 22 H 0.060 0.940 23 H 0.048 0.952 24 H 0.025 0.975 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.264 0.736 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.181 3.101 7.191 9.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.295 6.295 3 C 0.028 3.972 4 C -0.139 4.139 5 C 0.268 3.732 6 O -0.471 6.471 7 N -0.164 5.164 8 C -0.026 4.026 9 C -0.424 4.424 10 H 0.121 0.879 11 C -0.177 4.177 12 N -0.532 5.532 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.194 1.194 17 C -0.182 4.182 18 C -0.196 4.196 19 H 0.054 0.946 20 H 0.101 0.899 21 H 0.057 0.943 22 H 0.078 0.922 23 H 0.066 0.934 24 H 0.043 0.957 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.846 2.536 7.040 9.496 hybrid contribution -0.026 0.113 -0.897 0.905 sum -5.873 2.650 6.143 8.902 Atomic orbital electron populations 1.22704 0.81923 1.02454 0.99447 1.88043 1.18667 1.27536 1.95220 1.22020 0.90308 0.84715 1.00130 1.21198 0.93329 1.04342 0.95002 1.18684 0.84916 0.86598 0.83038 1.90495 1.54773 1.18911 1.82941 1.43631 1.46560 1.15036 1.11200 1.21793 0.99059 0.84691 0.97099 1.19823 1.29360 1.03043 0.90198 0.87880 1.25285 0.97716 0.95647 0.99033 1.70177 1.47772 1.09031 1.26236 0.85855 0.79029 0.78750 0.80648 1.20418 1.20980 1.19448 1.22856 1.03042 0.98456 0.93799 1.23050 1.01854 0.91825 1.02915 0.94593 0.89878 0.94269 0.92239 0.93425 0.95662 0.90924 0.92130 0.92526 0.88814 0.88200 0.88100 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.38 -7.22 10.64 -35.23 -0.37 -7.59 16 3 C 0.11 1.86 5.37 37.16 0.20 2.06 16 4 C -0.14 -2.71 0.98 -155.66 -0.15 -2.87 16 5 C 0.48 12.56 6.76 -10.99 -0.07 12.49 16 6 O -0.59 -17.58 16.51 5.54 0.09 -17.49 16 7 N -0.45 -12.02 3.03 -122.19 -0.37 -12.38 16 8 C 0.12 2.75 8.13 59.85 0.49 3.23 16 9 C -0.30 -8.59 9.57 -14.93 -0.14 -8.74 16 10 H 0.10 3.14 7.18 -52.49 -0.38 2.77 16 11 C 0.02 0.66 5.44 -17.47 -0.09 0.56 16 12 N -0.89 -23.85 9.47 55.50 0.53 -23.33 16 13 Si 0.93 21.40 29.56 -169.99 -5.02 16.37 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 C -0.14 -2.49 9.82 -26.69 -0.26 -2.75 16 18 C -0.16 -2.59 9.03 -26.69 -0.24 -2.83 16 19 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 20 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 21 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.06 1.06 6.53 -51.93 -0.34 0.72 16 23 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 24 H 0.02 0.50 4.33 -51.93 -0.22 0.27 16 25 H 0.07 1.79 6.93 -51.93 -0.36 1.43 16 26 H 0.06 1.50 7.17 -51.93 -0.37 1.13 16 27 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 28 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 29 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 30 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 31 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 262.14 15.07 3.95 3.95 Total: -1.00 -32.86 262.14 -4.56 -37.41 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -4.19 Total: 0.36 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 0.83 Total: 2.70 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.16 Total: -35.71 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.28 Total: -25.08 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.86 -4.56 -37.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308404313.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.787 kcal (2) G-P(sol) polarization free energy of solvation -32.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds