Wall clock time and date at job start Sun Mar 29 2020 22:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 113.99969 * 2 1 4 4 C 1.53006 * 109.47354 * 175.18089 * 3 2 1 5 5 C 1.50691 * 115.55235 * 65.54753 * 4 3 2 6 6 O 1.21298 * 120.00331 * 254.30670 * 5 4 3 7 7 N 1.34778 * 120.00146 * 74.29938 * 5 4 3 8 8 C 1.46507 * 119.99871 * 356.71699 * 7 5 4 9 9 C 1.37098 * 120.00436 * 176.71384 * 7 5 4 10 10 H 1.08001 * 119.99612 * 358.65125 * 9 7 5 11 11 C 1.38947 * 120.00371 * 178.65450 * 9 7 5 12 12 N 1.31419 * 119.99780 * 7.49308 * 11 9 7 13 13 Si 1.86795 * 120.00141 * 187.49200 * 11 9 7 14 14 H 1.48503 * 109.47298 * 90.00105 * 13 11 9 15 15 H 1.48502 * 109.47138 * 209.99797 * 13 11 9 16 16 H 1.48498 * 109.47202 * 329.99876 * 13 11 9 17 17 C 1.52999 * 117.49265 * 279.88093 * 4 3 2 18 18 C 1.53002 * 117.49875 * 211.22124 * 4 3 2 19 19 H 1.08997 * 109.47612 * 300.00182 * 1 2 3 20 20 H 1.08997 * 109.47275 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.46812 * 60.00251 * 1 2 3 22 22 H 1.09004 * 109.47292 * 295.17826 * 3 2 1 23 23 H 1.08996 * 109.47534 * 55.17970 * 3 2 1 24 24 H 1.09003 * 109.46811 * 359.57583 * 8 7 5 25 25 H 1.08997 * 109.47099 * 119.57588 * 8 7 5 26 26 H 1.08998 * 109.46643 * 239.57979 * 8 7 5 27 27 H 0.96993 * 119.99543 * 180.02562 * 12 11 9 28 28 H 1.08995 * 117.50264 * 359.97438 * 17 4 3 29 29 H 1.09004 * 117.49683 * 145.02521 * 17 4 3 30 30 H 1.08998 * 117.50068 * 214.97491 * 18 4 3 31 31 H 1.09004 * 117.49713 * 359.97438 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5308 1.1868 0.1212 5 6 4.2267 0.5333 -1.0448 6 8 4.6514 -0.5982 -0.9411 7 7 4.3773 1.2061 -2.2029 8 6 3.8016 2.5450 -2.3525 9 6 5.0692 0.6376 -3.2410 10 1 5.5122 -0.3404 -3.1233 11 6 5.2005 1.3194 -4.4445 12 7 4.7918 2.5646 -4.5422 13 14 5.9579 0.4663 -5.9236 14 1 4.8908 -0.2066 -6.7071 15 1 6.6409 1.4705 -6.7782 16 1 6.9441 -0.5432 -5.4615 17 6 4.1115 0.9456 1.5160 18 6 4.2717 2.3124 0.8456 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 1.7585 1.8152 -0.9300 23 1 1.6219 1.8761 0.8436 24 1 3.2867 2.8238 -1.4331 25 1 4.5972 3.2619 -2.5552 26 1 3.0926 2.5451 -3.1803 27 1 4.8831 3.0405 -5.3824 28 1 3.4104 0.8719 2.3473 29 1 4.9973 0.3147 1.5902 30 1 5.2627 2.5801 0.4791 31 1 3.6759 3.1378 1.2355 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308404313.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:20 Heat of formation + Delta-G solvation = -58.962287 kcal Electronic energy + Delta-G solvation = -14844.149093 eV Core-core repulsion = 12319.727614 eV Total energy + Delta-G solvation = -2524.421479 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.98906 -38.73640 -37.19786 -36.56228 -33.51036 -29.35592 -28.30667 -26.75588 -26.37147 -23.54031 -23.31221 -19.95949 -18.95881 -18.02662 -17.06068 -17.00591 -16.67612 -16.04695 -15.88000 -15.40986 -15.04729 -14.45512 -13.70323 -13.57181 -13.33766 -12.94333 -12.81443 -12.66774 -12.44783 -12.35300 -12.18750 -12.11576 -11.44469 -11.11775 -11.03492 -10.57402 -10.23200 -9.88143 -8.25993 -5.91539 1.34484 1.37827 1.50583 1.99986 2.23830 2.49665 3.04200 3.09831 3.19521 3.76277 3.95524 4.04347 4.17571 4.34424 4.51457 4.55561 4.66142 4.72766 4.76127 4.84019 4.92117 5.00795 5.20476 5.24707 5.42299 5.50549 6.03025 6.30874 6.48819 7.16440 7.50026 8.05916 8.65435 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036038 B = 0.009552 C = 0.009080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.776190 B = 2930.692789 C = 3082.865301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.109 3.891 4 C -0.167 4.167 5 C 0.467 3.533 6 O -0.642 6.642 7 N -0.460 5.460 8 C 0.131 3.869 9 C -0.345 4.345 10 H 0.071 0.929 11 C -0.004 4.004 12 N -0.895 5.895 13 Si 0.992 3.008 14 H -0.272 1.272 15 H -0.265 1.265 16 H -0.277 1.277 17 C -0.138 4.138 18 C -0.130 4.130 19 H 0.067 0.933 20 H 0.090 0.910 21 H 0.042 0.958 22 H 0.050 0.950 23 H 0.096 0.904 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.272 0.728 28 H 0.130 0.870 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.366 4.784 7.915 11.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C 0.032 3.968 4 C -0.170 4.170 5 C 0.256 3.744 6 O -0.531 6.531 7 N -0.178 5.178 8 C -0.011 4.011 9 C -0.473 4.473 10 H 0.089 0.911 11 C -0.205 4.205 12 N -0.535 5.535 13 Si 0.815 3.185 14 H -0.197 1.197 15 H -0.189 1.189 16 H -0.202 1.202 17 C -0.175 4.175 18 C -0.167 4.167 19 H 0.085 0.915 20 H 0.108 0.892 21 H 0.061 0.939 22 H 0.069 0.931 23 H 0.114 0.886 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.148 0.852 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.055 4.271 7.763 11.326 hybrid contribution 0.336 -0.419 -1.124 1.246 sum -6.719 3.852 6.640 10.201 Atomic orbital electron populations 1.22938 0.79402 1.03625 1.01105 1.87991 1.21591 1.28793 1.95550 1.22067 0.88366 0.84677 1.01655 1.21175 0.94911 1.07400 0.93527 1.19824 0.84119 0.86160 0.84257 1.90435 1.56998 1.21488 1.84174 1.43900 1.46444 1.16119 1.11292 1.21657 0.98130 0.82804 0.98517 1.19736 1.32106 1.02950 0.92465 0.91108 1.26036 0.97453 0.96270 1.00723 1.70261 1.46764 1.09306 1.27152 0.84958 0.78254 0.77978 0.77264 1.19699 1.18911 1.20154 1.22960 1.02559 0.98782 0.93215 1.23206 1.01145 0.92267 1.00109 0.91491 0.89157 0.93893 0.93140 0.88638 0.91598 0.92332 0.93839 0.91736 0.85232 0.90674 0.89576 0.83807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.88 16 2 O -0.42 -15.52 10.64 -148.98 -1.58 -17.10 16 3 C 0.11 3.55 5.37 71.98 0.39 3.93 16 4 C -0.17 -6.47 0.98 -52.93 -0.05 -6.52 16 5 C 0.47 25.11 6.76 87.65 0.59 25.70 16 6 O -0.64 -40.59 16.51 -3.09 -0.05 -40.64 16 7 N -0.46 -25.48 3.03 -658.88 -1.99 -27.47 16 8 C 0.13 6.15 8.13 127.77 1.04 7.19 16 9 C -0.34 -20.82 9.57 84.04 0.80 -20.01 16 10 H 0.07 4.62 7.18 -2.91 -0.02 4.60 16 11 C 0.00 -0.22 5.44 84.92 0.46 0.24 16 12 N -0.89 -47.71 9.47 21.66 0.21 -47.51 16 13 Si 0.99 44.09 29.56 68.60 2.03 46.12 16 14 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 15 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 16 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 17 C -0.14 -4.47 9.82 30.62 0.30 -4.17 16 18 C -0.13 -3.82 9.03 30.62 0.28 -3.55 16 19 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 20 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 21 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.05 1.69 6.53 -2.39 -0.02 1.68 16 23 H 0.10 2.19 8.08 -2.39 -0.02 2.17 16 24 H 0.07 2.49 4.33 -2.39 -0.01 2.48 16 25 H 0.06 2.87 6.93 -2.39 -0.02 2.85 16 26 H 0.04 2.15 7.17 -2.39 -0.02 2.13 16 27 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 28 H 0.13 3.25 8.14 -2.39 -0.02 3.23 16 29 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.14 2.87 8.14 -2.38 -0.02 2.85 16 Total: -1.00 -75.19 262.14 4.78 -70.41 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 1.11 Total: 11.50 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 5.06 Total: 4.69 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -1.79 Total: -74.98 kcal Atomic # 8 Polarization: -56.11 SS G_CDS: -1.64 Total: -57.74 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -75.19 4.78 -70.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308404313.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.449 kcal (2) G-P(sol) polarization free energy of solvation -75.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds