Wall clock time and date at job start Sun Mar 29 2020 22:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42906 * 109.47181 * 2 1 4 4 C 1.42907 * 113.99953 * 179.97438 * 3 2 1 5 5 C 1.53779 * 113.61372 * 210.00136 * 4 3 2 6 6 C 1.53781 * 87.07868 * 220.02140 * 5 4 3 7 7 C 1.50706 * 113.61083 * 139.98291 * 6 5 4 8 8 O 1.21288 * 120.00224 * 359.72054 * 7 6 5 9 9 N 1.34777 * 119.99766 * 179.97438 * 7 6 5 10 10 C 1.37095 * 119.99970 * 179.97438 * 9 7 6 11 11 H 1.07999 * 119.99992 * 0.02562 * 10 9 7 12 12 C 1.38956 * 120.00025 * 180.02562 * 10 9 7 13 13 N 1.31404 * 120.00146 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99914 * 359.97438 * 12 10 9 15 15 H 1.48508 * 109.46742 * 90.00261 * 14 12 10 16 16 H 1.48501 * 109.47216 * 210.00118 * 14 12 10 17 17 H 1.48499 * 109.47135 * 330.00460 * 14 12 10 18 18 C 1.53775 * 87.08212 * 25.43455 * 6 5 4 19 19 H 1.09001 * 109.47389 * 300.00244 * 1 2 3 20 20 H 1.09001 * 109.47169 * 59.99558 * 1 2 3 21 21 H 1.09000 * 109.47477 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47502 * 240.00297 * 2 1 3 23 23 H 1.08995 * 109.47381 * 120.00083 * 2 1 3 24 24 H 1.08999 * 112.90474 * 341.25611 * 4 3 2 25 25 H 1.08996 * 113.61455 * 105.46874 * 5 4 3 26 26 H 1.09003 * 113.61486 * 334.56861 * 5 4 3 27 27 H 1.08996 * 113.61423 * 270.79527 * 6 5 4 28 28 H 0.96999 * 120.00043 * 0.02562 * 9 7 6 29 29 H 0.96996 * 120.00328 * 179.97438 * 13 12 10 30 30 H 1.08996 * 113.61809 * 89.11589 * 18 6 5 31 31 H 1.09007 * 113.61519 * 220.01948 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9483 2.7253 0.7052 6 6 4.9899 2.8313 -0.4212 7 6 5.2278 4.2429 -0.8925 8 8 4.6159 5.1614 -0.3896 9 7 6.1168 4.4840 -1.8763 10 6 6.3329 5.7680 -2.3055 11 1 5.7910 6.5863 -1.8548 12 6 7.2491 6.0166 -3.3202 13 7 7.4565 7.2473 -3.7312 14 14 8.1869 4.6012 -4.0991 15 1 7.4203 4.0780 -5.2584 16 1 9.5147 5.0810 -4.5596 17 1 8.3712 3.5194 -3.0986 18 6 4.0029 2.0462 -1.3010 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 3.9287 0.5458 0.3236 25 1 4.3835 2.5320 1.6856 26 1 3.2299 3.5450 0.7140 27 1 5.9146 2.2932 -0.2129 28 1 6.6033 3.7490 -2.2813 29 1 8.0963 7.4209 -4.4392 30 1 3.2993 2.6802 -1.8406 31 1 4.4821 1.3046 -1.9402 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308410157.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:24 Heat of formation + Delta-G solvation = -92.519374 kcal Electronic energy + Delta-G solvation = -14050.518941 eV Core-core repulsion = 11524.642318 eV Total energy + Delta-G solvation = -2525.876623 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.14416 -39.30887 -36.98808 -35.97446 -33.75905 -31.82758 -28.16043 -26.64070 -25.52565 -23.63023 -21.73464 -20.90999 -19.85096 -18.39130 -17.25428 -16.74988 -16.49354 -16.43567 -15.57815 -15.15683 -14.87182 -14.53285 -14.00155 -13.77427 -13.42676 -13.34854 -13.00564 -12.48038 -12.39853 -12.33576 -12.03287 -11.91653 -11.70659 -11.56465 -11.47339 -10.44497 -10.28717 -10.26670 -8.43909 -6.05448 1.28896 1.34459 1.43975 1.90137 2.21739 2.69113 3.08521 3.14174 3.55007 3.67905 3.86224 3.95999 4.25450 4.29639 4.41736 4.51464 4.56825 4.74276 4.84835 4.89449 5.02122 5.08560 5.15730 5.26958 5.38258 5.54487 5.92409 6.44998 6.56059 6.84615 7.36974 7.93892 8.73987 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052872 B = 0.006368 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.449504 B = 4395.970476 C = 4618.241142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.046 3.954 3 O -0.403 6.403 4 C 0.080 3.920 5 C -0.119 4.119 6 C -0.125 4.125 7 C 0.457 3.543 8 O -0.631 6.631 9 N -0.585 5.585 10 C -0.335 4.335 11 H 0.052 0.948 12 C -0.014 4.014 13 N -0.933 5.933 14 Si 0.966 3.034 15 H -0.256 1.256 16 H -0.272 1.272 17 H -0.229 1.229 18 C -0.138 4.138 19 H 0.055 0.945 20 H 0.051 0.949 21 H 0.093 0.907 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.130 0.870 25 H 0.094 0.906 26 H 0.062 0.938 27 H 0.145 0.855 28 H 0.391 0.609 29 H 0.280 0.720 30 H 0.061 0.939 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.011 -21.511 4.453 22.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.030 4.030 3 O -0.323 6.323 4 C 0.022 3.978 5 C -0.157 4.157 6 C -0.146 4.146 7 C 0.246 3.754 8 O -0.517 6.517 9 N -0.225 5.225 10 C -0.464 4.464 11 H 0.070 0.930 12 C -0.212 4.212 13 N -0.574 5.574 14 Si 0.785 3.215 15 H -0.180 1.180 16 H -0.197 1.197 17 H -0.152 1.152 18 C -0.176 4.176 19 H 0.074 0.926 20 H 0.070 0.930 21 H 0.112 0.888 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.148 0.852 25 H 0.112 0.888 26 H 0.080 0.920 27 H 0.163 0.837 28 H 0.227 0.773 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.441 -20.588 4.652 21.797 hybrid contribution 0.662 0.296 -0.668 0.987 sum -4.778 -20.291 3.983 21.223 Atomic orbital electron populations 1.21790 0.93587 1.03329 1.02287 1.22761 0.96029 0.82923 1.01288 1.87995 1.21373 1.28341 1.94575 1.23673 0.80906 0.98198 0.95013 1.23054 0.96711 0.97867 0.98039 1.22493 1.00809 0.91630 0.99678 1.20852 0.81228 0.91872 0.81494 1.90522 1.52386 1.48400 1.60385 1.42052 1.38491 1.07494 1.34461 1.19055 1.23694 0.84769 1.18929 0.92971 1.26159 0.97856 1.00514 0.96717 1.69803 1.36062 1.21890 1.29619 0.85359 0.78197 0.78187 0.79768 1.18050 1.19717 1.15242 1.23425 0.97126 0.99204 0.97879 0.92622 0.93005 0.88793 0.92192 0.91661 0.85246 0.88780 0.91973 0.83716 0.77330 0.91020 0.92019 0.87464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 10.28 71.98 0.74 -1.72 16 2 C 0.05 0.81 6.50 71.98 0.47 1.28 16 3 O -0.40 -10.75 10.35 -148.98 -1.54 -12.30 16 4 C 0.08 1.89 4.31 31.12 0.13 2.02 16 5 C -0.12 -3.62 7.24 31.12 0.23 -3.39 16 6 C -0.12 -3.97 4.15 -11.01 -0.05 -4.02 16 7 C 0.46 21.81 7.31 87.66 0.64 22.45 16 8 O -0.63 -37.24 15.47 -3.05 -0.05 -37.28 16 9 N -0.59 -28.71 5.09 -306.98 -1.56 -30.27 16 10 C -0.34 -20.28 10.16 84.04 0.85 -19.43 16 11 H 0.05 3.76 7.39 -2.91 -0.02 3.74 16 12 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 13 N -0.93 -57.14 13.96 21.66 0.30 -56.84 16 14 Si 0.97 39.13 27.74 68.60 1.90 41.03 16 15 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 16 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 17 H -0.23 -7.77 6.52 99.48 0.65 -7.12 16 18 C -0.14 -3.78 7.46 31.12 0.23 -3.55 16 19 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 20 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 21 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.13 1.99 7.87 -2.39 -0.02 1.97 16 25 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.06 2.43 7.43 -2.39 -0.02 2.42 16 27 H 0.15 3.40 8.14 -2.39 -0.02 3.38 16 28 H 0.39 15.77 5.76 -92.71 -0.53 15.24 16 29 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 30 H 0.06 2.11 8.09 -2.39 -0.02 2.09 16 31 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 Total: -1.00 -79.26 266.24 3.29 -75.97 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.53 Total: 26.35 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 3.72 Total: -6.66 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -1.26 Total: -87.11 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: -1.59 Total: -49.58 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 1.90 Total: 41.03 kcal Total: -79.26 3.29 -75.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308410157.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.548 kcal (2) G-P(sol) polarization free energy of solvation -79.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds