Wall clock time and date at job start Sun Mar 29 2020 22:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 114.00148 * 2 1 4 4 C 1.52994 * 109.47513 * 179.97438 * 3 2 1 5 5 C 1.50697 * 112.85291 * 309.66723 * 4 3 2 6 6 O 1.21291 * 120.00763 * 228.52907 * 5 4 3 7 7 N 1.34784 * 119.99774 * 48.80009 * 5 4 3 8 8 C 1.37092 * 119.99968 * 179.72830 * 7 5 4 9 9 H 1.08005 * 120.00127 * 359.97438 * 8 7 5 10 10 C 1.38955 * 120.00107 * 179.97438 * 8 7 5 11 11 N 1.31413 * 119.99828 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00407 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47025 * 89.99899 * 12 10 8 14 14 H 1.48496 * 109.47352 * 210.00610 * 12 10 8 15 15 H 1.48511 * 109.46991 * 330.00512 * 12 10 8 16 16 C 1.53789 * 113.69095 * 80.93553 * 4 3 2 17 17 C 1.53781 * 87.07999 * 89.12756 * 16 4 3 18 18 C 1.53785 * 87.08407 * 25.43428 * 17 16 4 19 19 H 1.09004 * 109.47101 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47407 * 299.99797 * 1 2 3 21 21 H 1.08998 * 109.47537 * 60.00307 * 1 2 3 22 22 H 1.09004 * 109.47031 * 59.99802 * 3 2 1 23 23 H 1.09004 * 109.47368 * 300.00225 * 3 2 1 24 24 H 0.97005 * 119.99846 * 359.72750 * 7 5 4 25 25 H 0.96990 * 120.00373 * 180.02562 * 11 10 8 26 26 H 1.09001 * 113.61182 * 203.67539 * 16 4 3 27 27 H 1.08996 * 113.61248 * 334.57978 * 16 4 3 28 28 H 1.09001 * 113.61382 * 270.88500 * 17 16 4 29 29 H 1.09004 * 113.61016 * 139.98068 * 17 16 4 30 30 H 1.08992 * 113.61366 * 220.01838 * 18 17 16 31 31 H 1.08996 * 113.61272 * 89.11122 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.0484 0.2550 1.0700 6 8 4.9552 0.6061 1.7950 7 7 3.5032 -0.9689 1.2172 8 6 3.9737 -1.8167 2.1864 9 1 4.7814 -1.5042 2.8316 10 6 3.4113 -3.0783 2.3385 11 7 2.4288 -3.4587 1.5531 12 14 4.0527 -4.2339 3.6585 13 1 3.2950 -4.0169 4.9171 14 1 3.8796 -5.6396 3.2125 15 1 5.4937 -3.9636 3.8955 16 6 4.1344 0.9145 -1.3898 17 6 4.2022 2.4401 -1.5704 18 6 4.2607 2.5402 -0.0369 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.6885 1.8463 0.8900 23 1 1.6886 1.8464 -0.8900 24 1 2.7780 -1.2497 0.6374 25 1 2.0360 -4.3391 1.6594 26 1 5.1126 0.4346 -1.3580 27 1 3.4433 0.4239 -2.0751 28 1 3.2979 2.8693 -2.0018 29 1 5.1116 2.7812 -2.0652 30 1 3.6715 3.3621 0.3698 31 1 5.2734 2.5048 0.3646 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308410252.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:54 Heat of formation + Delta-G solvation = -65.035175 kcal Electronic energy + Delta-G solvation = -14899.993846 eV Core-core repulsion = 12375.309027 eV Total energy + Delta-G solvation = -2524.684819 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.77179 -36.95686 -36.45874 -33.66724 -31.02687 -28.60385 -25.91861 -25.39797 -24.70162 -23.33155 -20.00669 -18.16020 -17.49631 -16.34429 -15.80912 -15.31014 -14.91833 -14.47372 -13.92110 -13.80751 -13.21810 -13.02047 -12.30244 -11.87277 -11.68901 -11.53611 -11.32218 -11.02165 -10.86883 -10.49598 -10.26694 -10.13522 -9.95737 -9.89974 -9.34519 -9.25624 -8.09910 -7.76211 -6.26553 -3.65575 3.24320 3.32222 3.38905 3.89106 4.19398 4.28375 4.87847 5.04036 5.07816 5.29382 5.37063 5.52355 5.52993 5.65540 5.74502 5.78486 5.92851 5.99311 6.09739 6.18381 6.28100 6.39992 6.61096 6.71234 6.91290 7.56833 7.67277 8.24438 8.84837 9.32978 9.83589 10.35163 10.90322 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034295 B = 0.010518 C = 0.008727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.246120 B = 2661.352685 C = 3207.756042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.374 6.374 3 C 0.089 3.911 4 C -0.099 4.099 5 C 0.451 3.549 6 O -0.607 6.607 7 N -0.544 5.544 8 C -0.301 4.301 9 H 0.099 0.901 10 C 0.023 3.977 11 N -0.893 5.893 12 Si 0.926 3.074 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.270 1.270 16 C -0.117 4.117 17 C -0.145 4.145 18 C -0.105 4.105 19 H 0.089 0.911 20 H 0.036 0.964 21 H 0.033 0.967 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.406 0.594 25 H 0.269 0.731 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.816 7.727 -6.376 10.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.292 6.292 3 C 0.012 3.988 4 C -0.103 4.103 5 C 0.237 3.763 6 O -0.494 6.494 7 N -0.182 5.182 8 C -0.431 4.431 9 H 0.117 0.883 10 C -0.179 4.179 11 N -0.534 5.534 12 Si 0.753 3.247 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.195 1.195 16 C -0.155 4.155 17 C -0.182 4.182 18 C -0.143 4.143 19 H 0.107 0.893 20 H 0.055 0.945 21 H 0.052 0.948 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.246 0.754 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.244 7.561 -5.910 10.131 hybrid contribution -0.477 -0.627 0.379 0.874 sum -3.721 6.934 -5.532 9.619 Atomic orbital electron populations 1.22676 0.81226 1.02998 0.98896 1.87840 1.19432 1.26817 1.95111 1.22206 0.91606 0.85286 0.99715 1.21968 0.93498 0.97887 0.96898 1.19407 0.86267 0.83649 0.87013 1.90469 1.33398 1.76726 1.48839 1.42180 1.32712 1.11878 1.31420 1.19760 1.17212 0.94728 1.11395 0.88310 1.25256 0.96358 0.97850 0.98436 1.69674 1.24550 1.20817 1.38368 0.85930 0.79333 0.78986 0.80423 1.20544 1.20989 1.19497 1.22834 1.01542 0.96029 0.95114 1.22901 1.01498 0.96896 0.96917 1.22743 1.01871 0.94473 0.95171 0.89289 0.94520 0.94818 0.93184 0.93175 0.75408 0.92163 0.89725 0.91081 0.90567 0.91487 0.91814 0.88345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 11.01 101.05 1.11 1.70 16 2 O -0.37 -7.23 7.59 -35.23 -0.27 -7.49 16 3 C 0.09 1.53 5.26 37.15 0.20 1.72 16 4 C -0.10 -1.92 1.12 -154.84 -0.17 -2.09 16 5 C 0.45 11.63 6.88 -10.98 -0.08 11.56 16 6 O -0.61 -17.58 15.47 5.55 0.09 -17.49 16 7 N -0.54 -15.05 4.97 -10.96 -0.05 -15.11 16 8 C -0.30 -8.92 9.68 -14.93 -0.14 -9.06 16 9 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 10 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 11 N -0.89 -25.34 13.05 55.50 0.72 -24.62 16 12 Si 0.93 21.83 29.55 -169.99 -5.02 16.80 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 16 C -0.12 -1.98 7.20 -25.91 -0.19 -2.17 16 17 C -0.14 -1.97 7.73 -25.92 -0.20 -2.17 16 18 C -0.10 -1.73 7.00 -25.91 -0.18 -1.92 16 19 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 20 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.05 0.70 7.34 -51.93 -0.38 0.32 16 24 H 0.41 11.00 5.13 -40.82 -0.21 10.79 16 25 H 0.27 7.15 8.31 -40.82 -0.34 6.82 16 26 H 0.08 1.53 8.09 -51.93 -0.42 1.11 16 27 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 28 H 0.08 0.89 7.64 -51.93 -0.40 0.49 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 31 H 0.10 1.81 7.43 -51.93 -0.39 1.42 16 LS Contribution 261.35 15.07 3.94 3.94 Total: -1.00 -32.77 261.35 -4.60 -37.37 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -4.26 Total: 8.49 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 0.25 Total: -1.89 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.67 Total: -39.73 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.18 Total: -24.98 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.77 -4.60 -37.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308410252.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.663 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds