Wall clock time and date at job start Sun Mar 29 2020 22:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 114.00148 * 2 1 4 4 C 1.52994 * 109.47513 * 179.97438 * 3 2 1 5 5 C 1.50697 * 112.85291 * 309.66723 * 4 3 2 6 6 O 1.21291 * 120.00763 * 228.52907 * 5 4 3 7 7 N 1.34784 * 119.99774 * 48.80009 * 5 4 3 8 8 C 1.37092 * 119.99968 * 179.72830 * 7 5 4 9 9 H 1.08005 * 120.00127 * 359.97438 * 8 7 5 10 10 C 1.38955 * 120.00107 * 179.97438 * 8 7 5 11 11 N 1.31413 * 119.99828 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00407 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47025 * 89.99899 * 12 10 8 14 14 H 1.48496 * 109.47352 * 210.00610 * 12 10 8 15 15 H 1.48511 * 109.46991 * 330.00512 * 12 10 8 16 16 C 1.53789 * 113.69095 * 80.93553 * 4 3 2 17 17 C 1.53781 * 87.07999 * 89.12756 * 16 4 3 18 18 C 1.53785 * 87.08407 * 25.43428 * 17 16 4 19 19 H 1.09004 * 109.47101 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47407 * 299.99797 * 1 2 3 21 21 H 1.08998 * 109.47537 * 60.00307 * 1 2 3 22 22 H 1.09004 * 109.47031 * 59.99802 * 3 2 1 23 23 H 1.09004 * 109.47368 * 300.00225 * 3 2 1 24 24 H 0.97005 * 119.99846 * 359.72750 * 7 5 4 25 25 H 0.96990 * 120.00373 * 180.02562 * 11 10 8 26 26 H 1.09001 * 113.61182 * 203.67539 * 16 4 3 27 27 H 1.08996 * 113.61248 * 334.57978 * 16 4 3 28 28 H 1.09001 * 113.61382 * 270.88500 * 17 16 4 29 29 H 1.09004 * 113.61016 * 139.98068 * 17 16 4 30 30 H 1.08992 * 113.61366 * 220.01838 * 18 17 16 31 31 H 1.08996 * 113.61272 * 89.11122 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.0484 0.2550 1.0700 6 8 4.9552 0.6061 1.7950 7 7 3.5032 -0.9689 1.2172 8 6 3.9737 -1.8167 2.1864 9 1 4.7814 -1.5042 2.8316 10 6 3.4113 -3.0783 2.3385 11 7 2.4288 -3.4587 1.5531 12 14 4.0527 -4.2339 3.6585 13 1 3.2950 -4.0169 4.9171 14 1 3.8796 -5.6396 3.2125 15 1 5.4937 -3.9636 3.8955 16 6 4.1344 0.9145 -1.3898 17 6 4.2022 2.4401 -1.5704 18 6 4.2607 2.5402 -0.0369 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.6885 1.8463 0.8900 23 1 1.6886 1.8464 -0.8900 24 1 2.7780 -1.2497 0.6374 25 1 2.0360 -4.3391 1.6594 26 1 5.1126 0.4346 -1.3580 27 1 3.4433 0.4239 -2.0751 28 1 3.2979 2.8693 -2.0018 29 1 5.1116 2.7812 -2.0652 30 1 3.6715 3.3621 0.3698 31 1 5.2734 2.5048 0.3646 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308410252.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:54 Heat of formation + Delta-G solvation = -88.437564 kcal Electronic energy + Delta-G solvation = -14901.008650 eV Core-core repulsion = 12375.309027 eV Total energy + Delta-G solvation = -2525.699623 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.33681 -38.66829 -37.96692 -35.82042 -33.17833 -29.97347 -27.43232 -26.90452 -26.28101 -24.83831 -21.70984 -20.10196 -19.21741 -18.02949 -17.26293 -16.86533 -16.39553 -16.18942 -15.78240 -15.19850 -15.01596 -14.90482 -13.62717 -13.55630 -13.23148 -13.10357 -12.91245 -12.68499 -12.39500 -12.13603 -12.03874 -11.90905 -11.48526 -11.30895 -11.18905 -10.57400 -10.09041 -9.93481 -8.42326 -5.91177 1.36186 1.38477 1.52555 2.05378 2.30754 2.76920 3.22429 3.30002 3.75666 3.77020 3.92799 4.06335 4.34833 4.39184 4.54929 4.57344 4.65474 4.82683 4.87935 4.92531 4.99835 5.08215 5.13689 5.29608 5.41449 5.55420 6.04764 6.33079 6.70112 7.15620 7.72449 8.27044 8.74347 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034295 B = 0.010518 C = 0.008727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.246120 B = 2661.352685 C = 3207.756042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.413 6.413 3 C 0.092 3.908 4 C -0.110 4.110 5 C 0.441 3.559 6 O -0.650 6.650 7 N -0.555 5.555 8 C -0.344 4.344 9 H 0.073 0.927 10 C -0.012 4.012 11 N -0.911 5.911 12 Si 0.993 3.007 13 H -0.270 1.270 14 H -0.267 1.267 15 H -0.274 1.274 16 C -0.121 4.121 17 C -0.113 4.113 18 C -0.108 4.108 19 H 0.079 0.921 20 H 0.041 0.959 21 H 0.069 0.931 22 H 0.048 0.952 23 H 0.096 0.904 24 H 0.408 0.592 25 H 0.277 0.723 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.945 8.457 -7.589 12.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.332 6.332 3 C 0.015 3.985 4 C -0.114 4.114 5 C 0.229 3.771 6 O -0.541 6.541 7 N -0.194 5.194 8 C -0.474 4.474 9 H 0.091 0.909 10 C -0.213 4.213 11 N -0.551 5.551 12 Si 0.816 3.184 13 H -0.195 1.195 14 H -0.191 1.191 15 H -0.199 1.199 16 C -0.159 4.159 17 C -0.150 4.150 18 C -0.145 4.145 19 H 0.098 0.902 20 H 0.060 0.940 21 H 0.088 0.912 22 H 0.067 0.933 23 H 0.114 0.886 24 H 0.248 0.752 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.130 0.870 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.402 8.297 -7.149 11.803 hybrid contribution -0.134 -0.851 0.759 1.148 sum -4.536 7.445 -6.390 10.809 Atomic orbital electron populations 1.22827 0.79296 1.03127 1.00878 1.87767 1.21688 1.28309 1.95455 1.22298 0.89501 0.84911 1.01773 1.22228 0.95695 0.97778 0.95671 1.20680 0.85185 0.83734 0.87547 1.90421 1.35191 1.77572 1.50868 1.42325 1.33084 1.12573 1.31372 1.19760 1.18148 0.96518 1.13002 0.90910 1.26101 0.96181 0.98601 1.00385 1.69742 1.24736 1.21514 1.39098 0.84943 0.78409 0.77237 0.77764 1.19505 1.19134 1.19892 1.22862 1.00357 0.99057 0.93659 1.22836 1.04187 0.93563 0.94451 1.22757 1.00283 0.93488 0.98021 0.90213 0.94019 0.91237 0.93339 0.88606 0.75174 0.91383 0.92083 0.89875 0.86999 0.89544 0.89523 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 11.01 113.37 1.25 2.23 16 2 O -0.41 -15.54 7.59 -148.98 -1.13 -16.67 16 3 C 0.09 2.94 5.26 71.98 0.38 3.31 16 4 C -0.11 -4.20 1.12 -52.40 -0.06 -4.26 16 5 C 0.44 23.50 6.88 87.65 0.60 24.10 16 6 O -0.65 -39.52 15.47 -3.06 -0.05 -39.56 16 7 N -0.55 -31.82 4.97 -306.97 -1.53 -33.35 16 8 C -0.34 -21.23 9.68 84.04 0.81 -20.42 16 9 H 0.07 4.75 7.16 -2.91 -0.02 4.73 16 10 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 11 N -0.91 -51.91 13.05 21.66 0.28 -51.63 16 12 Si 0.99 45.07 29.55 68.60 2.03 47.10 16 13 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 14 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 15 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 16 C -0.12 -3.91 7.20 31.12 0.22 -3.69 16 17 C -0.11 -2.65 7.73 31.12 0.24 -2.41 16 18 C -0.11 -3.38 7.00 31.12 0.22 -3.16 16 19 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 20 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 21 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 23 H 0.10 2.20 7.34 -2.38 -0.02 2.18 16 24 H 0.41 22.70 5.13 -92.70 -0.48 22.22 16 25 H 0.28 14.59 8.31 -92.72 -0.77 13.81 16 26 H 0.06 2.22 8.09 -2.39 -0.02 2.20 16 27 H 0.08 2.46 8.10 -2.39 -0.02 2.44 16 28 H 0.11 1.91 7.64 -2.39 -0.02 1.89 16 29 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.09 2.29 8.10 -2.39 -0.02 2.27 16 31 H 0.07 2.60 7.43 -2.39 -0.02 2.59 16 Total: -1.00 -74.06 261.35 4.39 -69.67 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: 0.65 Total: 28.96 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 4.13 Total: -4.53 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -1.24 Total: -84.97 kcal Atomic # 8 Polarization: -55.05 SS G_CDS: -1.18 Total: -56.23 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -74.06 4.39 -69.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308410252.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.764 kcal (2) G-P(sol) polarization free energy of solvation -74.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds