Wall clock time and date at job start Sun Mar 29 2020 22:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37087 * 120.00133 * 2 1 4 4 H 1.08004 * 120.00039 * 202.40918 * 3 2 1 5 5 C 1.38952 * 120.00370 * 22.39915 * 3 2 1 6 6 N 1.31419 * 119.99385 * 11.61522 * 5 3 2 7 7 Si 1.86796 * 120.00320 * 191.60707 * 5 3 2 8 8 H 1.48500 * 109.47374 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.46931 * 120.00394 * 7 5 3 10 10 H 1.48504 * 109.47073 * 240.00297 * 7 5 3 11 11 C 1.34782 * 119.99501 * 180.02562 * 2 1 3 12 12 O 1.21290 * 119.99300 * 179.97438 * 11 2 1 13 13 C 1.50700 * 120.00368 * 359.97438 * 11 2 1 14 14 O 1.42895 * 109.47037 * 180.02562 * 13 11 2 15 15 C 1.42904 * 113.99739 * 180.02562 * 14 13 11 16 16 C 1.53007 * 109.46726 * 179.97438 * 15 14 13 17 17 C 1.52997 * 117.49267 * 243.61864 * 16 15 14 18 18 C 1.52999 * 60.00180 * 252.51492 * 17 16 15 19 19 H 1.09000 * 109.46977 * 272.15891 * 1 2 3 20 20 H 1.08997 * 109.47018 * 32.15802 * 1 2 3 21 21 H 1.09005 * 109.47825 * 152.15789 * 1 2 3 22 22 H 0.97001 * 119.99695 * 179.97438 * 6 5 3 23 23 H 1.08995 * 109.47032 * 59.99813 * 13 11 2 24 24 H 1.09000 * 109.46933 * 300.00217 * 13 11 2 25 25 H 1.08994 * 109.47112 * 60.00209 * 15 14 13 26 26 H 1.09000 * 109.47227 * 299.99615 * 15 14 13 27 27 H 1.08998 * 115.55360 * 29.32990 * 16 15 14 28 28 H 1.08991 * 117.50782 * 0.02562 * 17 16 15 29 29 H 1.09008 * 117.49457 * 145.02498 * 17 16 15 30 30 H 1.09008 * 117.50101 * 252.51784 * 18 17 16 31 31 H 1.08999 * 117.49912 * 107.49117 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1693 1.2225 -0.3566 5 6 1.5344 2.3452 0.4585 6 7 0.3897 2.2707 1.0996 7 14 2.3335 4.0077 0.1639 8 1 3.6075 3.8206 -0.5757 9 1 1.4186 4.8620 -0.6352 10 1 2.6093 4.6625 1.4680 11 6 2.1388 -1.1673 -0.0005 12 8 3.3517 -1.1673 -0.0010 13 6 1.3853 -2.4724 -0.0005 14 8 2.3138 -3.5585 -0.0005 15 6 1.6992 -4.8486 -0.0011 16 6 2.7822 -5.9294 -0.0017 17 6 2.8561 -6.8546 -1.2180 18 6 2.3271 -7.3855 0.1159 19 1 -0.3633 0.0387 1.0269 20 1 -0.3633 0.8700 -0.5470 21 1 -0.3635 -0.9087 -0.4800 22 1 -0.0402 3.0790 1.4201 23 1 0.7583 -2.5299 -0.8902 24 1 0.7590 -2.5303 0.8897 25 1 1.0794 -4.9554 -0.8913 26 1 1.0788 -4.9559 0.8887 27 1 3.7207 -5.6550 0.4801 28 1 2.1336 -6.6932 -2.0179 29 1 3.8435 -7.1889 -1.5368 30 1 2.9664 -8.0690 0.6748 31 1 1.2563 -7.5733 0.1937 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308442933.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:04 Heat of formation + Delta-G solvation = -46.405289 kcal Electronic energy + Delta-G solvation = -14007.296308 eV Core-core repulsion = 11483.419341 eV Total energy + Delta-G solvation = -2523.876967 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.73739 -37.78713 -36.09943 -34.52436 -31.63051 -28.50761 -26.51861 -25.64540 -23.86886 -22.44932 -20.69669 -19.05916 -16.95560 -16.67813 -15.90449 -15.51460 -15.23710 -14.66087 -14.02363 -13.89170 -13.75836 -12.81394 -12.39662 -11.84215 -11.62918 -11.47861 -11.32136 -11.20928 -10.95053 -10.82615 -10.49524 -10.29888 -10.28425 -10.12708 -9.22723 -9.01856 -8.30204 -7.67049 -6.29580 -3.86055 3.17009 3.26964 3.33955 3.55814 3.87345 3.91445 4.22831 4.75774 4.85767 4.92849 5.13462 5.29950 5.36030 5.48500 5.53109 5.66353 5.70528 5.80382 5.82535 5.93374 6.01997 6.22191 6.30113 6.86469 7.20997 7.48499 7.59011 8.16025 8.52047 9.21606 9.42653 10.00008 10.74494 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.080148 B = 0.005688 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.268593 B = 4921.693996 C = 5150.672085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.449 5.449 3 C -0.303 4.303 4 H 0.100 0.900 5 C 0.029 3.971 6 N -0.886 5.886 7 Si 0.928 3.072 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.281 1.281 11 C 0.449 3.551 12 O -0.570 6.570 13 C 0.056 3.944 14 O -0.359 6.359 15 C 0.090 3.910 16 C -0.148 4.148 17 C -0.178 4.178 18 C -0.177 4.177 19 H 0.059 0.941 20 H 0.071 0.929 21 H 0.024 0.976 22 H 0.266 0.734 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.115 0.885 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.113 -12.190 -2.287 12.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.170 5.170 3 C -0.430 4.430 4 H 0.118 0.882 5 C -0.174 4.174 6 N -0.526 5.526 7 Si 0.755 3.245 8 H -0.192 1.192 9 H -0.207 1.207 10 H -0.207 1.207 11 C 0.236 3.764 12 O -0.453 6.453 13 C -0.024 4.024 14 O -0.277 6.277 15 C 0.012 3.988 16 C -0.166 4.166 17 C -0.215 4.215 18 C -0.214 4.214 19 H 0.077 0.923 20 H 0.089 0.911 21 H 0.043 0.957 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.133 0.867 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.447 -12.012 -2.208 12.456 hybrid contribution -0.284 0.823 -0.007 0.871 sum -2.730 -11.188 -2.215 11.728 Atomic orbital electron populations 1.21535 0.81109 0.98801 1.01802 1.43530 1.05506 1.04413 1.63525 1.19719 0.99581 0.83530 1.40210 0.88245 1.25347 0.96556 1.00084 0.95391 1.70009 1.17467 1.29157 1.35932 0.85828 0.79264 0.81273 0.78147 1.19188 1.20684 1.20727 1.19707 0.88191 0.84206 0.84339 1.90536 1.13745 1.86748 1.54251 1.22245 0.91941 0.87526 1.00695 1.88018 1.32083 1.12372 1.95244 1.21994 0.93788 0.83244 0.99733 1.22137 1.01464 0.90016 1.03014 1.23049 1.02772 1.04032 0.91665 1.22959 1.01547 0.95992 1.00865 0.92276 0.91056 0.95748 0.92336 0.92033 0.91708 0.93531 0.93129 0.86669 0.88755 0.88710 0.88570 0.88802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.50 8.52 59.85 0.51 3.01 16 2 N -0.45 -11.89 3.02 -122.19 -0.37 -12.26 16 3 C -0.30 -8.67 9.29 -14.94 -0.14 -8.80 16 4 H 0.10 2.99 7.41 -52.48 -0.39 2.60 16 5 C 0.03 0.77 5.11 -17.46 -0.09 0.68 16 6 N -0.89 -23.82 10.62 55.50 0.59 -23.23 16 7 Si 0.93 21.03 29.57 -169.99 -5.03 16.01 16 8 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 C 0.45 11.68 7.70 -10.98 -0.08 11.59 16 12 O -0.57 -17.17 16.19 -14.36 -0.23 -17.41 16 13 C 0.06 1.12 4.94 36.01 0.18 1.29 16 14 O -0.36 -7.23 9.88 -55.14 -0.54 -7.78 16 15 C 0.09 1.30 6.22 37.16 0.23 1.53 16 16 C -0.15 -1.93 6.06 -90.62 -0.55 -2.48 16 17 C -0.18 -1.93 10.18 -26.73 -0.27 -2.20 16 18 C -0.18 -1.74 10.25 -26.73 -0.27 -2.01 16 19 H 0.06 1.37 7.54 -51.93 -0.39 0.98 16 20 H 0.07 1.67 7.06 -51.93 -0.37 1.31 16 21 H 0.02 0.44 6.36 -51.93 -0.33 0.11 16 22 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 23 H 0.06 1.07 7.40 -51.93 -0.38 0.68 16 24 H 0.06 1.16 8.11 -51.93 -0.42 0.74 16 25 H 0.05 0.60 7.87 -51.93 -0.41 0.19 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.12 1.64 8.14 -51.93 -0.42 1.21 16 28 H 0.09 0.96 8.03 -51.93 -0.42 0.54 16 29 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 30 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 267.66 15.07 4.03 4.03 Total: -1.00 -32.68 267.66 -6.39 -39.07 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -4.36 Total: -1.06 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -0.49 Total: 2.62 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.22 Total: -35.48 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.78 Total: -25.18 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.68 -6.39 -39.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308442933.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.333 kcal (2) G-P(sol) polarization free energy of solvation -32.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds