Wall clock time and date at job start Sun Mar 29 2020 22:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 113.99869 * 2 1 4 4 C 1.50701 * 112.84930 * 65.31600 * 3 2 1 5 5 O 1.21284 * 119.99583 * 215.41347 * 4 3 2 6 6 N 1.34773 * 120.00252 * 35.69623 * 4 3 2 7 7 C 1.46495 * 120.00078 * 184.58803 * 6 4 3 8 8 C 1.50703 * 109.47182 * 179.97438 * 7 6 4 9 9 H 1.08007 * 119.99875 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00091 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99873 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 120.00058 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.46724 * 89.99998 * 12 10 8 14 14 H 1.48495 * 109.46880 * 210.00421 * 12 10 8 15 15 H 1.48503 * 109.46799 * 330.00203 * 12 10 8 16 16 C 1.53782 * 113.61247 * 196.51333 * 3 2 1 17 17 C 1.53952 * 87.02088 * 89.22811 * 16 3 2 18 18 C 1.53782 * 113.61244 * 294.11998 * 3 2 1 19 19 H 1.09000 * 109.47474 * 295.18172 * 1 2 3 20 20 H 1.09007 * 109.46721 * 55.18192 * 1 2 3 21 21 H 1.08995 * 109.47021 * 175.17917 * 1 2 3 22 22 H 0.97002 * 119.99831 * 4.58355 * 6 4 3 23 23 H 1.08993 * 109.47271 * 299.99763 * 7 6 4 24 24 H 1.08999 * 109.47078 * 60.00074 * 7 6 4 25 25 H 0.96995 * 120.00283 * 179.97438 * 11 10 8 26 26 H 1.09003 * 113.61553 * 203.74755 * 16 3 2 27 27 H 1.09002 * 113.61441 * 334.64925 * 16 3 2 28 28 H 1.08996 * 113.54139 * 270.81392 * 17 16 3 29 29 H 1.08997 * 113.74542 * 139.93911 * 17 16 3 30 30 H 1.08992 * 113.61913 * 25.34638 * 18 3 2 31 31 H 1.09001 * 113.61310 * 156.17034 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7183 2.0760 1.2619 5 8 1.5434 3.2752 1.2133 6 7 1.6575 1.4334 2.4450 7 6 1.2752 2.1634 3.6562 8 6 1.2834 1.2226 4.8334 9 1 1.5467 0.1845 4.6933 10 6 0.9539 1.6867 6.0892 11 7 0.9616 0.8658 7.1166 12 14 0.4980 3.4819 6.3315 13 1 -0.9674 3.6483 6.1573 14 1 0.8857 3.9108 7.6993 15 1 1.2131 4.3137 5.3305 16 6 3.4949 1.3188 -0.4005 17 6 3.0180 1.4752 -1.8559 18 6 1.7347 2.1024 -1.2860 19 1 -0.3634 0.4372 0.9300 20 1 -0.3633 0.5868 -0.8438 21 1 -0.3633 -1.0240 -0.0864 22 1 1.8667 0.4875 2.4945 23 1 1.9844 2.9721 3.8321 24 1 0.2751 2.5782 3.5300 25 1 0.7302 1.1923 8.0001 26 1 4.0408 2.1841 -0.0245 27 1 4.0077 0.3766 -0.2070 28 1 2.8513 0.5254 -2.3639 29 1 3.6197 2.1692 -2.4427 30 1 0.8287 1.7920 -1.8065 31 1 1.7971 3.1824 -1.1523 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308460433.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:35 Heat of formation + Delta-G solvation = -62.765707 kcal Electronic energy + Delta-G solvation = -14568.958957 eV Core-core repulsion = 12044.372550 eV Total energy + Delta-G solvation = -2524.586408 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.44851 -37.66846 -35.67247 -34.20859 -32.32272 -28.43771 -27.09781 -25.74301 -25.15507 -22.20158 -20.37412 -19.26326 -18.01918 -16.42322 -16.11609 -15.41174 -14.94914 -14.86421 -14.28152 -14.18444 -13.81623 -13.15538 -12.49192 -12.40306 -12.18931 -11.74820 -11.59684 -11.28478 -11.00384 -10.85882 -10.78661 -10.63731 -9.98146 -9.95622 -9.49451 -8.85438 -8.77858 -8.16083 -6.21798 -4.24114 3.04712 3.25282 3.31963 3.40349 3.56077 3.94592 4.32406 4.50280 4.67648 4.82341 5.10179 5.13196 5.36118 5.42983 5.51946 5.67203 5.77498 5.81784 5.88112 5.95263 6.06378 6.26349 6.75187 7.03448 7.06624 7.26146 7.37739 8.13010 8.51461 8.73975 8.88927 9.37987 10.90194 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.048056 B = 0.007812 C = 0.007392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.511597 B = 3583.157283 C = 3786.853291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.355 6.355 3 C 0.066 3.934 4 C 0.490 3.510 5 O -0.554 6.554 6 N -0.695 5.695 7 C 0.218 3.782 8 C -0.543 4.543 9 H 0.080 0.920 10 C 0.078 3.922 11 N -0.892 5.892 12 Si 0.876 3.124 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.261 1.261 16 C -0.113 4.113 17 C -0.133 4.133 18 C -0.146 4.146 19 H 0.051 0.949 20 H 0.044 0.956 21 H 0.090 0.910 22 H 0.401 0.599 23 H 0.026 0.974 24 H 0.019 0.981 25 H 0.268 0.732 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.583 -0.500 -15.526 15.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.273 6.273 3 C 0.023 3.977 4 C 0.274 3.726 5 O -0.434 6.434 6 N -0.342 5.342 7 C 0.096 3.904 8 C -0.581 4.581 9 H 0.098 0.902 10 C -0.126 4.126 11 N -0.529 5.529 12 Si 0.703 3.297 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.185 1.185 16 C -0.151 4.151 17 C -0.170 4.170 18 C -0.184 4.184 19 H 0.069 0.931 20 H 0.062 0.938 21 H 0.109 0.891 22 H 0.236 0.764 23 H 0.044 0.956 24 H 0.037 0.963 25 H 0.077 0.923 26 H 0.117 0.883 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.508 0.158 -15.305 15.380 hybrid contribution -0.484 0.557 0.474 0.878 sum 1.024 0.715 -14.831 14.883 Atomic orbital electron populations 1.22858 0.80522 1.02879 1.01022 1.87889 1.20254 1.24429 1.94746 1.22920 0.97377 0.84461 0.92933 1.20857 0.77986 0.88163 0.85609 1.90637 1.51262 1.14563 1.86970 1.46238 1.66292 1.13930 1.07785 1.19526 0.95188 0.93421 0.82286 1.21098 1.48773 0.97335 0.90908 0.90171 1.24796 0.94314 0.97930 0.95556 1.69880 1.47742 1.35319 0.99949 0.86826 0.79575 0.85342 0.78004 1.19880 1.20821 1.18538 1.22953 0.92391 1.03661 0.96105 1.22805 0.96998 1.01224 0.95988 1.23379 0.98754 1.01525 0.94733 0.93081 0.93752 0.89108 0.76416 0.95599 0.96304 0.92252 0.88343 0.89706 0.89678 0.90934 0.90785 0.87764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.63 101.05 1.07 1.38 16 2 O -0.35 -5.30 10.14 -35.23 -0.36 -5.66 16 3 C 0.07 1.03 1.10 -90.96 -0.10 0.93 16 4 C 0.49 9.78 6.29 -10.99 -0.07 9.71 16 5 O -0.55 -12.75 15.92 5.55 0.09 -12.66 16 6 N -0.69 -14.87 5.37 -61.48 -0.33 -15.20 16 7 C 0.22 5.49 4.50 -5.19 -0.02 5.46 16 8 C -0.54 -15.17 9.83 -34.44 -0.34 -15.51 16 9 H 0.08 2.34 7.84 -52.48 -0.41 1.93 16 10 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 11 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 12 Si 0.88 21.59 27.47 -169.99 -4.67 16.93 16 13 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 16 C -0.11 -1.47 7.47 -25.83 -0.19 -1.66 16 17 C -0.13 -1.45 8.02 -25.83 -0.21 -1.66 16 18 C -0.15 -1.93 7.03 -25.92 -0.18 -2.11 16 19 H 0.05 0.78 7.55 -51.93 -0.39 0.38 16 20 H 0.04 0.52 6.59 -51.92 -0.34 0.18 16 21 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.40 8.02 8.01 -40.82 -0.33 7.70 16 23 H 0.03 0.69 7.20 -51.93 -0.37 0.31 16 24 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 25 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.10 1.29 8.09 -51.93 -0.42 0.87 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.89 6.71 -51.93 -0.35 0.54 16 31 H 0.10 1.49 7.34 -51.93 -0.38 1.11 16 LS Contribution 261.74 15.07 3.94 3.94 Total: -1.00 -31.50 261.74 -4.93 -36.44 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -4.25 Total: 3.44 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -0.14 Total: -1.33 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.44 Total: -41.10 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.27 Total: -18.32 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.50 -4.93 -36.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308460433.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.327 kcal (2) G-P(sol) polarization free energy of solvation -31.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds