Wall clock time and date at job start Sun Mar 29 2020 22:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 113.99869 * 2 1 4 4 C 1.50701 * 112.84930 * 65.31600 * 3 2 1 5 5 O 1.21284 * 119.99583 * 215.41347 * 4 3 2 6 6 N 1.34773 * 120.00252 * 35.69623 * 4 3 2 7 7 C 1.46495 * 120.00078 * 184.58803 * 6 4 3 8 8 C 1.50703 * 109.47182 * 179.97438 * 7 6 4 9 9 H 1.08007 * 119.99875 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00091 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99873 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 120.00058 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.46724 * 89.99998 * 12 10 8 14 14 H 1.48495 * 109.46880 * 210.00421 * 12 10 8 15 15 H 1.48503 * 109.46799 * 330.00203 * 12 10 8 16 16 C 1.53782 * 113.61247 * 196.51333 * 3 2 1 17 17 C 1.53952 * 87.02088 * 89.22811 * 16 3 2 18 18 C 1.53782 * 113.61244 * 294.11998 * 3 2 1 19 19 H 1.09000 * 109.47474 * 295.18172 * 1 2 3 20 20 H 1.09007 * 109.46721 * 55.18192 * 1 2 3 21 21 H 1.08995 * 109.47021 * 175.17917 * 1 2 3 22 22 H 0.97002 * 119.99831 * 4.58355 * 6 4 3 23 23 H 1.08993 * 109.47271 * 299.99763 * 7 6 4 24 24 H 1.08999 * 109.47078 * 60.00074 * 7 6 4 25 25 H 0.96995 * 120.00283 * 179.97438 * 11 10 8 26 26 H 1.09003 * 113.61553 * 203.74755 * 16 3 2 27 27 H 1.09002 * 113.61441 * 334.64925 * 16 3 2 28 28 H 1.08996 * 113.54139 * 270.81392 * 17 16 3 29 29 H 1.08997 * 113.74542 * 139.93911 * 17 16 3 30 30 H 1.08992 * 113.61913 * 25.34638 * 18 3 2 31 31 H 1.09001 * 113.61310 * 156.17034 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7183 2.0760 1.2619 5 8 1.5434 3.2752 1.2133 6 7 1.6575 1.4334 2.4450 7 6 1.2752 2.1634 3.6562 8 6 1.2834 1.2226 4.8334 9 1 1.5467 0.1845 4.6933 10 6 0.9539 1.6867 6.0892 11 7 0.9616 0.8658 7.1166 12 14 0.4980 3.4819 6.3315 13 1 -0.9674 3.6483 6.1573 14 1 0.8857 3.9108 7.6993 15 1 1.2131 4.3137 5.3305 16 6 3.4949 1.3188 -0.4005 17 6 3.0180 1.4752 -1.8559 18 6 1.7347 2.1024 -1.2860 19 1 -0.3634 0.4372 0.9300 20 1 -0.3633 0.5868 -0.8438 21 1 -0.3633 -1.0240 -0.0864 22 1 1.8667 0.4875 2.4945 23 1 1.9844 2.9721 3.8321 24 1 0.2751 2.5782 3.5300 25 1 0.7302 1.1923 8.0001 26 1 4.0408 2.1841 -0.0245 27 1 4.0077 0.3766 -0.2070 28 1 2.8513 0.5254 -2.3639 29 1 3.6197 2.1692 -2.4427 30 1 0.8287 1.7920 -1.8065 31 1 1.7971 3.1824 -1.1523 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308460433.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:35 Heat of formation + Delta-G solvation = -86.293694 kcal Electronic energy + Delta-G solvation = -14569.979208 eV Core-core repulsion = 12044.372550 eV Total energy + Delta-G solvation = -2525.606658 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.76026 -39.16997 -36.86262 -36.01906 -34.41563 -30.34894 -28.27038 -26.94293 -26.32969 -24.07224 -21.92980 -20.50250 -19.63652 -18.34622 -17.40313 -16.88053 -16.47485 -16.34489 -15.90723 -15.50726 -15.08299 -14.87043 -14.43330 -14.19571 -13.38697 -13.13868 -12.87994 -12.73610 -12.69376 -12.32632 -11.96798 -11.87357 -11.72368 -11.70525 -11.09907 -10.95738 -10.31111 -10.00332 -8.43340 -6.51341 1.29493 1.31754 1.44179 1.48455 2.24379 2.29708 2.53797 2.91231 3.41633 3.63479 3.74999 3.80768 4.28662 4.38763 4.46291 4.67201 4.69088 4.78211 4.82177 4.94310 4.96715 5.02983 5.07108 5.19691 5.33817 5.42766 5.90463 6.08672 6.48823 6.74790 7.09031 7.26163 8.71594 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.048056 B = 0.007812 C = 0.007392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.511597 B = 3583.157283 C = 3786.853291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.357 6.357 3 C 0.061 3.939 4 C 0.488 3.512 5 O -0.587 6.587 6 N -0.698 5.698 7 C 0.231 3.769 8 C -0.550 4.550 9 H 0.056 0.944 10 C 0.027 3.973 11 N -0.930 5.930 12 Si 0.939 3.061 13 H -0.263 1.263 14 H -0.270 1.270 15 H -0.261 1.261 16 C -0.116 4.116 17 C -0.112 4.112 18 C -0.145 4.145 19 H 0.024 0.976 20 H 0.061 0.939 21 H 0.116 0.884 22 H 0.407 0.593 23 H 0.014 0.986 24 H 0.012 0.988 25 H 0.274 0.726 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.667 -0.184 -17.299 17.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.275 6.275 3 C 0.017 3.983 4 C 0.275 3.725 5 O -0.468 6.468 6 N -0.346 5.346 7 C 0.107 3.893 8 C -0.588 4.588 9 H 0.074 0.926 10 C -0.173 4.173 11 N -0.568 5.568 12 Si 0.762 3.238 13 H -0.188 1.188 14 H -0.195 1.195 15 H -0.186 1.186 16 C -0.153 4.153 17 C -0.149 4.149 18 C -0.183 4.183 19 H 0.042 0.958 20 H 0.080 0.920 21 H 0.134 0.866 22 H 0.243 0.757 23 H 0.032 0.968 24 H 0.030 0.970 25 H 0.083 0.917 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.598 0.450 -17.100 17.181 hybrid contribution -0.516 0.388 1.018 1.205 sum 1.082 0.838 -16.083 16.141 Atomic orbital electron populations 1.23021 0.79738 1.04669 1.00331 1.87903 1.21151 1.23887 1.94558 1.23103 0.99523 0.84704 0.90936 1.21803 0.76286 0.88104 0.86357 1.90609 1.52422 1.16249 1.87557 1.46150 1.66909 1.14107 1.07479 1.19141 0.94459 0.92684 0.83015 1.21262 1.48520 0.96782 0.92200 0.92613 1.25620 0.94160 1.02286 0.95255 1.69981 1.48751 1.37436 1.00635 0.85836 0.79692 0.79916 0.78329 1.18794 1.19501 1.18574 1.23057 0.90571 1.04068 0.97628 1.22763 0.95205 1.02187 0.94746 1.23407 1.00919 1.00518 0.93458 0.95763 0.92002 0.86583 0.75731 0.96850 0.96991 0.91723 0.88854 0.88665 0.88083 0.88752 0.89346 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.63 113.37 1.20 1.66 16 2 O -0.36 -9.98 10.14 -148.98 -1.51 -11.49 16 3 C 0.06 1.78 1.10 -11.01 -0.01 1.77 16 4 C 0.49 19.38 6.29 87.66 0.55 19.93 16 5 O -0.59 -27.00 15.92 -3.04 -0.05 -27.05 16 6 N -0.70 -30.18 5.37 -466.80 -2.51 -32.68 16 7 C 0.23 11.74 4.50 85.64 0.39 12.13 16 8 C -0.55 -31.29 9.83 25.60 0.25 -31.04 16 9 H 0.06 3.36 7.84 -2.91 -0.02 3.34 16 10 C 0.03 1.57 5.47 84.65 0.46 2.03 16 11 N -0.93 -56.17 13.96 21.45 0.30 -55.87 16 12 Si 0.94 44.52 27.47 68.60 1.88 46.40 16 13 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 15 H -0.26 -12.33 6.54 99.48 0.65 -11.68 16 16 C -0.12 -2.74 7.47 31.18 0.23 -2.51 16 17 C -0.11 -2.04 8.02 31.18 0.25 -1.79 16 18 C -0.15 -3.49 7.03 31.12 0.22 -3.27 16 19 H 0.02 0.72 7.55 -2.39 -0.02 0.70 16 20 H 0.06 1.30 6.59 -2.38 -0.02 1.29 16 21 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 22 H 0.41 16.51 8.01 -92.71 -0.74 15.77 16 23 H 0.01 0.72 7.20 -2.39 -0.02 0.71 16 24 H 0.01 0.63 7.57 -2.39 -0.02 0.62 16 25 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 26 H 0.09 2.30 8.09 -2.39 -0.02 2.28 16 27 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.09 1.85 6.71 -2.39 -0.02 1.83 16 31 H 0.09 2.46 7.34 -2.39 -0.02 2.44 16 Total: -1.00 -67.53 261.74 1.99 -65.54 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.33 Total: 16.25 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: 3.55 Total: -1.09 kcal Atomic # 7 Polarization: -86.34 SS G_CDS: -2.21 Total: -88.55 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -1.56 Total: -38.54 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Total: -67.53 1.99 -65.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308460433.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.754 kcal (2) G-P(sol) polarization free energy of solvation -67.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds