Wall clock time and date at job start Sun Mar 29 2020 22:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36942 * 119.99696 * 2 1 4 4 H 1.08004 * 120.00069 * 203.03838 * 3 2 1 5 5 C 1.38814 * 119.99969 * 23.04458 * 3 2 1 6 6 N 1.31618 * 120.00030 * 12.92719 * 5 3 2 7 7 Si 1.86799 * 119.99900 * 192.92808 * 5 3 2 8 8 H 1.48500 * 109.47342 * 59.99511 * 7 5 3 9 9 H 1.48503 * 109.47194 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47155 * 299.99895 * 7 5 3 11 11 C 1.46500 * 120.00520 * 179.97438 * 2 1 3 12 12 C 1.53004 * 109.46916 * 90.00146 * 11 2 1 13 13 C 1.52999 * 109.47029 * 180.02562 * 12 11 2 14 14 H 1.08999 * 110.32920 * 304.22152 * 13 12 11 15 15 C 1.54495 * 110.36714 * 181.85607 * 13 12 11 16 16 C 1.54566 * 102.14585 * 225.82092 * 15 13 12 17 17 O 1.45843 * 104.44647 * 26.84990 * 16 15 13 18 18 C 1.34067 * 109.90404 * 329.39790 * 17 16 15 19 19 O 1.20826 * 125.09066 * 200.83496 * 18 17 16 20 20 H 1.09001 * 109.47560 * 275.12101 * 1 2 3 21 21 H 1.09001 * 109.46960 * 155.12305 * 1 2 3 22 22 H 1.08998 * 109.47206 * 35.12797 * 1 2 3 23 23 H 0.97003 * 120.00250 * 180.02562 * 6 5 3 24 24 H 1.08999 * 109.47134 * 210.00655 * 11 2 1 25 25 H 1.09004 * 109.46873 * 330.00448 * 11 2 1 26 26 H 1.08993 * 109.47052 * 300.00550 * 12 11 2 27 27 H 1.08997 * 109.46686 * 60.00396 * 12 11 2 28 28 H 1.08995 * 110.86612 * 343.98712 * 15 13 12 29 29 H 1.09000 * 110.86348 * 107.65849 * 15 13 12 30 30 H 1.09005 * 110.44049 * 268.11037 * 16 15 13 31 31 H 1.08995 * 110.54829 * 145.64490 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1650 1.2234 -0.3660 5 6 1.5385 2.3402 0.4706 6 7 0.4116 2.2597 1.1458 7 14 2.3157 4.0074 0.1456 8 1 2.4195 4.2281 -1.3193 9 1 1.4734 5.0720 0.7476 10 1 3.6717 4.0477 0.7494 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7109 -1.4418 13 6 3.2172 -3.0362 -1.4412 14 1 4.1384 -2.9417 -0.8663 15 6 3.5267 -3.4790 -2.8886 16 6 3.1367 -4.9744 -2.8617 17 8 2.1236 -5.0674 -1.8167 18 6 2.3537 -4.1421 -0.8743 19 8 1.9345 -4.1849 0.2581 20 1 -0.3634 0.0917 1.0235 21 1 -0.3633 -0.9323 -0.4323 22 1 -0.3633 0.8405 -0.5913 23 1 -0.0156 3.0663 1.4743 24 1 3.1499 -1.1380 0.5144 25 1 1.6085 -2.0281 0.5147 26 1 1.5003 -1.8414 -1.9556 27 1 3.0417 -0.9514 -1.9558 28 1 2.9123 -2.9302 -3.6023 29 1 4.5864 -3.3581 -3.1133 30 1 4.0011 -5.5887 -2.6095 31 1 2.7217 -5.2789 -3.8224 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308462321.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:24 Heat of formation + Delta-G solvation = -65.712304 kcal Electronic energy + Delta-G solvation = -14447.065844 eV Core-core repulsion = 11922.351663 eV Total energy + Delta-G solvation = -2524.714182 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.91453 -37.29725 -35.97406 -33.93764 -31.35606 -29.51571 -26.65575 -25.71513 -23.22214 -22.45434 -20.65680 -19.91858 -17.34624 -16.80863 -16.52321 -15.84729 -14.77546 -14.31077 -13.85637 -13.74525 -13.54736 -12.99662 -12.43177 -12.31801 -12.05139 -11.61076 -11.27362 -10.91124 -10.82295 -10.73516 -10.58488 -10.44464 -10.19150 -9.93860 -9.77889 -9.45260 -8.47927 -6.65217 -5.64769 -3.11852 2.25640 3.29635 3.41575 3.46532 3.47780 4.09218 4.29173 4.51117 4.61032 4.78641 5.17836 5.25842 5.45377 5.49778 5.58328 5.73868 6.00112 6.06738 6.24857 6.51177 6.78243 6.83078 6.86899 7.06766 7.45530 7.68108 7.81745 7.86575 8.47691 9.31350 9.95718 10.46163 11.39979 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.053640 B = 0.007111 C = 0.006594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.873006 B = 3936.542627 C = 4245.377826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.603 5.603 3 C -0.255 4.255 4 H 0.067 0.933 5 C 0.000 4.000 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.142 3.858 12 C -0.122 4.122 13 C -0.150 4.150 14 H 0.113 0.887 15 C -0.153 4.153 16 C 0.054 3.946 17 O -0.354 6.354 18 C 0.484 3.516 19 O -0.445 6.445 20 H 0.031 0.969 21 H -0.004 1.004 22 H 0.039 0.961 23 H 0.252 0.748 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.677 -11.717 -9.492 16.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.326 5.326 3 C -0.385 4.385 4 H 0.085 0.915 5 C -0.198 4.198 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.212 1.212 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.015 3.985 12 C -0.162 4.162 13 C -0.170 4.170 14 H 0.131 0.869 15 C -0.191 4.191 16 C -0.020 4.020 17 O -0.272 6.272 18 C 0.324 3.676 19 O -0.327 6.327 20 H 0.049 0.951 21 H 0.015 0.985 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.171 -11.740 -8.849 15.944 hybrid contribution 0.494 1.059 -0.283 1.202 sum 6.665 -10.682 -9.132 15.554 Atomic orbital electron populations 1.20770 0.82748 0.95154 0.99464 1.43893 1.01834 1.00674 1.86184 1.19154 0.98223 0.85729 1.35404 0.91537 1.25042 0.97962 0.98506 0.98299 1.70071 1.19447 1.27198 1.38599 0.86341 0.78437 0.83953 0.77817 1.21184 1.21642 1.20974 1.20881 0.96664 0.88910 0.92044 1.22214 0.98977 0.91885 1.03140 1.22621 1.00936 0.97138 0.96350 0.86921 1.23073 1.03788 0.95085 0.97152 1.24084 0.90212 0.97430 0.90316 1.87010 1.50043 1.56056 1.34046 1.23240 0.78331 0.82084 0.83983 1.90715 1.49851 1.76757 1.15415 0.95106 0.98536 0.94217 0.93745 0.93616 0.93032 0.92306 0.90575 0.89028 0.88748 0.89993 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.31 8.98 59.84 0.54 4.85 16 2 N -0.60 -16.05 2.92 -181.12 -0.53 -16.58 16 3 C -0.26 -7.24 9.65 -15.06 -0.15 -7.38 16 4 H 0.07 1.81 7.86 -52.48 -0.41 1.39 16 5 C 0.00 0.00 5.10 -17.43 -0.09 -0.09 16 6 N -0.91 -27.50 10.71 55.49 0.59 -26.91 16 7 Si 0.90 22.22 29.57 -169.99 -5.03 17.19 16 8 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 9 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 C 0.14 3.14 5.42 -4.04 -0.02 3.12 16 12 C -0.12 -2.11 4.89 -26.73 -0.13 -2.24 16 13 C -0.15 -2.00 3.03 -90.68 -0.27 -2.28 16 14 H 0.11 1.38 8.14 -51.93 -0.42 0.95 16 15 C -0.15 -1.38 6.79 -25.12 -0.17 -1.56 16 16 C 0.05 0.46 7.90 37.98 0.30 0.76 16 17 O -0.35 -4.91 11.05 -38.48 -0.43 -5.34 16 18 C 0.48 7.74 7.75 36.32 0.28 8.02 16 19 O -0.45 -8.86 16.02 -18.41 -0.29 -9.16 16 20 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 21 H 0.00 -0.09 8.03 -51.93 -0.42 -0.51 16 22 H 0.04 1.09 7.34 -51.93 -0.38 0.71 16 23 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 25 H 0.05 1.18 6.07 -51.93 -0.31 0.87 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 28 H 0.09 0.83 7.81 -51.93 -0.41 0.42 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 260.76 15.07 3.93 3.93 Total: -1.00 -33.47 260.76 -5.87 -39.33 By element: Atomic # 1 Polarization: -1.28 SS G_CDS: -4.40 Total: -5.68 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 0.29 Total: 3.21 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.07 Total: -43.49 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.72 Total: -14.50 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.47 -5.87 -39.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308462321.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.378 kcal (2) G-P(sol) polarization free energy of solvation -33.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds