Wall clock time and date at job start Sun Mar 29 2020 21:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 113.99856 * 2 1 4 4 H 1.09003 * 109.47097 * 30.00861 * 3 2 1 5 5 C 1.52995 * 109.47288 * 270.00251 * 3 2 1 6 6 C 1.50705 * 109.46741 * 150.00219 * 3 2 1 7 7 O 1.21289 * 120.00200 * 10.54634 * 6 3 2 8 8 N 1.34779 * 119.99780 * 190.53681 * 6 3 2 9 9 C 1.37093 * 120.00153 * 174.52080 * 8 6 3 10 10 H 1.08007 * 120.00031 * 328.57139 * 9 8 6 11 11 C 1.38951 * 120.00195 * 148.57274 * 9 8 6 12 12 N 1.31412 * 119.99881 * 0.31781 * 11 9 8 13 13 Si 1.86802 * 120.00076 * 180.31747 * 11 9 8 14 14 H 1.48499 * 109.47122 * 270.00316 * 13 11 9 15 15 H 1.48503 * 109.46956 * 29.99939 * 13 11 9 16 16 H 1.48496 * 109.47294 * 149.99769 * 13 11 9 17 17 C 1.46500 * 120.00164 * 354.52726 * 8 6 3 18 18 C 1.52999 * 117.50269 * 133.73798 * 17 8 6 19 19 C 1.52996 * 117.50119 * 65.07850 * 17 8 6 20 20 H 1.09001 * 109.47660 * 59.99712 * 1 2 3 21 21 H 1.09003 * 109.47234 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47031 * 299.99752 * 1 2 3 23 23 H 1.09008 * 109.47086 * 184.82579 * 5 3 2 24 24 H 1.08996 * 109.47438 * 304.82736 * 5 3 2 25 25 H 1.08998 * 109.47483 * 64.83134 * 5 3 2 26 26 H 0.97002 * 119.99409 * 175.01597 * 12 11 9 27 27 H 1.09000 * 115.54834 * 279.41047 * 17 8 6 28 28 H 1.09001 * 117.49817 * 0.02562 * 18 17 8 29 29 H 1.08996 * 117.50047 * 145.01999 * 18 17 8 30 30 H 1.09006 * 117.50302 * 214.98368 * 19 17 8 31 31 H 1.09004 * 117.49820 * 359.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5140 5 6 2.2175 1.7714 -1.4424 6 6 3.3386 1.2638 0.7104 7 8 3.8373 0.1973 1.0018 8 7 3.9726 2.4118 1.0217 9 6 5.1236 2.3792 1.7657 10 1 5.2670 1.6050 2.5050 11 6 6.1057 3.3421 1.5686 12 7 5.9285 4.2878 0.6735 13 14 7.6779 3.2925 2.5762 14 1 7.4963 4.0886 3.8165 15 1 7.9932 1.8858 2.9326 16 1 8.7941 3.8636 1.7804 17 6 3.4316 3.6944 0.5652 18 6 3.3509 4.8308 1.5864 19 6 2.0736 4.1267 1.1218 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 2.7385 2.7290 -1.4436 24 1 2.8123 1.0336 -1.9807 25 1 1.2495 1.8840 -1.9307 26 1 6.5802 5.0010 0.5860 27 1 3.6603 3.9604 -0.4668 28 1 3.7007 4.6243 2.5979 29 1 3.5261 5.8445 1.2262 30 1 1.4090 4.6775 0.4561 31 1 1.5825 3.4566 1.8274 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308463239.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:03 Heat of formation + Delta-G solvation = -41.323748 kcal Electronic energy + Delta-G solvation = -15066.615586 eV Core-core repulsion = 12542.958971 eV Total energy + Delta-G solvation = -2523.656614 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.16175 -37.13911 -35.84085 -32.97392 -31.45355 -30.42700 -26.41094 -25.28448 -23.22909 -21.44407 -21.19808 -19.07560 -16.92339 -16.24003 -15.80528 -15.07285 -14.85927 -14.54684 -13.85717 -13.60039 -13.22315 -12.85773 -12.28725 -11.93706 -11.70673 -11.40609 -11.04885 -11.01277 -10.79589 -10.55892 -10.47770 -10.30307 -9.71796 -9.44974 -9.25241 -8.78322 -8.16675 -7.62777 -6.23390 -3.91576 3.19052 3.27824 3.33933 3.89898 3.91301 4.29748 4.70748 4.96367 5.12404 5.42277 5.54127 5.57622 5.63722 5.78785 5.79742 5.86060 5.95638 6.14250 6.17794 6.22718 6.33903 6.63510 6.78878 6.94236 7.17355 7.55360 7.58747 8.20674 8.55580 9.22953 9.41928 10.01418 10.79302 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.039680 B = 0.010886 C = 0.009453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.472513 B = 2571.400669 C = 2961.304476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.073 3.927 4 H 0.077 0.923 5 C -0.168 4.168 6 C 0.464 3.536 7 O -0.564 6.564 8 N -0.424 5.424 9 C -0.306 4.306 10 H 0.092 0.908 11 C 0.040 3.960 12 N -0.873 5.873 13 Si 0.922 3.078 14 H -0.279 1.279 15 H -0.269 1.269 16 H -0.283 1.283 17 C 0.131 3.869 18 C -0.130 4.130 19 C -0.235 4.235 20 H 0.037 0.963 21 H 0.082 0.918 22 H 0.037 0.963 23 H 0.079 0.921 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.266 0.734 27 H 0.107 0.893 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.573 2.217 -1.911 9.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C 0.012 3.988 4 H 0.095 0.905 5 C -0.225 4.225 6 C 0.251 3.749 7 O -0.445 6.445 8 N -0.145 5.145 9 C -0.434 4.434 10 H 0.110 0.890 11 C -0.165 4.165 12 N -0.511 5.511 13 Si 0.749 3.251 14 H -0.205 1.205 15 H -0.194 1.194 16 H -0.209 1.209 17 C 0.025 3.975 18 C -0.168 4.168 19 C -0.273 4.273 20 H 0.055 0.945 21 H 0.100 0.900 22 H 0.056 0.944 23 H 0.098 0.902 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.124 0.876 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.046 1.633 -1.877 8.422 hybrid contribution 0.542 0.537 0.424 0.873 sum -7.504 2.170 -1.453 7.945 Atomic orbital electron populations 1.22765 0.82269 1.02206 0.99432 1.88033 1.18258 1.26937 1.94952 1.22062 0.95198 0.84868 0.96650 0.90496 1.22221 1.01818 1.02894 0.95611 1.19894 0.87015 0.84654 0.83347 1.90537 1.68019 1.29241 1.56737 1.42979 1.22505 1.02028 1.47009 1.19496 0.92664 1.14845 1.16363 0.88995 1.25341 0.98247 0.96585 0.96286 1.69876 1.36398 1.12340 1.32529 0.85990 0.81343 0.78777 0.79026 1.20519 1.19374 1.20891 1.21174 0.92580 0.86681 0.97018 1.22646 0.97037 0.96695 1.00379 1.23638 0.92380 1.05848 1.05430 0.94480 0.89977 0.94444 0.90249 0.91765 0.92739 0.92383 0.87598 0.89182 0.89723 0.89508 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.82 101.05 1.09 1.52 16 2 O -0.36 -7.40 9.90 -54.92 -0.54 -7.94 16 3 C 0.07 1.48 2.37 -27.88 -0.07 1.42 16 4 H 0.08 1.40 5.21 -51.93 -0.27 1.13 16 5 C -0.17 -2.95 9.38 37.15 0.35 -2.60 16 6 C 0.46 11.98 6.95 -10.98 -0.08 11.90 16 7 O -0.56 -16.94 16.37 -14.14 -0.23 -17.17 16 8 N -0.42 -10.92 2.92 -107.73 -0.31 -11.24 16 9 C -0.31 -8.55 8.64 -14.93 -0.13 -8.68 16 10 H 0.09 2.70 7.62 -52.48 -0.40 2.30 16 11 C 0.04 1.04 5.06 -17.47 -0.09 0.95 16 12 N -0.87 -22.67 10.40 55.50 0.58 -22.10 16 13 Si 0.92 20.91 29.56 -169.99 -5.02 15.89 16 14 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 15 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 C 0.13 2.85 2.41 -67.93 -0.16 2.69 16 18 C -0.13 -2.63 8.48 -26.70 -0.23 -2.85 16 19 C -0.23 -4.15 8.59 -26.70 -0.23 -4.38 16 20 H 0.04 0.45 7.99 -51.93 -0.41 0.03 16 21 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.04 0.49 8.09 -51.93 -0.42 0.07 16 23 H 0.08 1.41 5.32 -51.92 -0.28 1.13 16 24 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.05 0.77 7.98 -51.93 -0.41 0.36 16 26 H 0.27 6.58 8.32 -40.82 -0.34 6.24 16 27 H 0.11 2.35 6.74 -51.93 -0.35 2.00 16 28 H 0.09 1.98 7.95 -51.93 -0.41 1.57 16 29 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 30 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.08 1.47 7.39 -51.93 -0.38 1.09 16 LS Contribution 258.33 15.07 3.89 3.89 Total: -1.00 -31.60 258.33 -5.35 -36.95 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -4.17 Total: 1.75 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 0.46 Total: -0.03 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: 0.26 Total: -33.33 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.78 Total: -25.12 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.60 -5.35 -36.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308463239.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.373 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds