Wall clock time and date at job start Sun Mar 29 2020 21:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99944 * 2 1 4 4 H 1.08997 * 109.47383 * 329.99843 * 3 2 1 5 5 C 1.53004 * 109.47143 * 89.99874 * 3 2 1 6 6 C 1.50701 * 109.47403 * 210.00116 * 3 2 1 7 7 O 1.21296 * 119.99498 * 359.97438 * 6 3 2 8 8 N 1.34774 * 120.00120 * 180.02562 * 6 3 2 9 9 C 1.37095 * 119.99759 * 179.97438 * 8 6 3 10 10 H 1.08004 * 119.99987 * 224.17393 * 9 8 6 11 11 C 1.38951 * 120.00598 * 44.17912 * 9 8 6 12 12 N 1.31420 * 119.99393 * 18.05593 * 11 9 8 13 13 Si 1.86797 * 120.00493 * 198.06118 * 11 9 8 14 14 H 1.48497 * 109.47037 * 269.99585 * 13 11 9 15 15 H 1.48492 * 109.46917 * 29.99760 * 13 11 9 16 16 H 1.48498 * 109.46956 * 149.99925 * 13 11 9 17 17 C 1.46495 * 120.00335 * 359.97438 * 8 6 3 18 18 C 1.52995 * 117.50269 * 189.28368 * 17 8 6 19 19 C 1.52997 * 117.50253 * 120.62049 * 17 8 6 20 20 H 1.08997 * 109.46916 * 299.99761 * 1 2 3 21 21 H 1.08999 * 109.46880 * 60.00351 * 1 2 3 22 22 H 1.08998 * 109.46562 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47207 * 60.00243 * 5 3 2 24 24 H 1.09002 * 109.46747 * 179.97438 * 5 3 2 25 25 H 1.09001 * 109.46819 * 299.99708 * 5 3 2 26 26 H 0.97006 * 119.99798 * 174.90052 * 12 11 9 27 27 H 1.09008 * 115.54881 * 334.95134 * 17 8 6 28 28 H 1.09004 * 117.49570 * 0.02562 * 18 17 8 29 29 H 1.09001 * 117.50151 * 145.01373 * 18 17 8 30 30 H 1.08999 * 117.50065 * 214.98185 * 19 17 8 31 31 H 1.09004 * 117.49511 * 359.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3386 1.2640 -0.7104 7 8 3.7476 0.2190 -1.1710 8 7 4.0726 2.3876 -0.8331 9 6 5.2813 2.3497 -1.4789 10 1 6.1353 2.8586 -1.0568 11 6 5.4078 1.6567 -2.6766 12 7 4.3367 1.3440 -3.3710 13 14 7.1000 1.1693 -3.2997 14 1 7.6430 2.2535 -4.1570 15 1 8.0079 0.9493 -2.1454 16 1 6.9942 -0.0822 -4.0920 17 6 3.5789 3.6495 -0.2763 18 6 4.3438 4.9259 -0.6321 19 6 4.4430 4.3420 0.7794 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 2.8829 1.0776 1.9564 24 1 2.6614 2.7670 1.4425 25 1 1.2568 1.8015 1.9563 26 1 4.4280 0.9263 -4.2417 27 1 2.4967 3.7246 -0.1692 28 1 5.2141 4.8268 -1.2809 29 1 3.7649 5.8408 -0.7587 30 1 3.9295 4.8730 1.5808 31 1 5.3788 3.8585 1.0600 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308463243.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:05 Heat of formation + Delta-G solvation = -34.441535 kcal Electronic energy + Delta-G solvation = -15076.963667 eV Core-core repulsion = 12553.605488 eV Total energy + Delta-G solvation = -2523.358179 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.99723 -37.12034 -35.75098 -32.73063 -31.52649 -30.16119 -26.33856 -25.15621 -23.00068 -21.71530 -20.97322 -19.40655 -16.75640 -16.07033 -15.97602 -14.83406 -14.51607 -14.48336 -13.73396 -13.56332 -13.10734 -12.65668 -12.21114 -12.17150 -11.42003 -11.34532 -11.03099 -10.86655 -10.80613 -10.62867 -10.45221 -10.13777 -9.91271 -9.70768 -9.25844 -8.64457 -7.84500 -6.97423 -6.07599 -3.83526 3.31437 3.42184 3.44334 4.03973 4.13385 4.40541 4.79384 4.99410 5.26236 5.44733 5.56080 5.59331 5.64498 5.67022 5.75065 5.86117 5.94038 5.98129 6.15319 6.21624 6.25145 6.46297 6.63458 6.75011 6.95952 7.60921 7.69197 8.31911 9.08644 9.22405 9.68304 10.33724 11.01749 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.027219 B = 0.013536 C = 0.009905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.431734 B = 2068.111553 C = 2826.190948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.360 6.360 3 C 0.073 3.927 4 H 0.066 0.934 5 C -0.175 4.175 6 C 0.486 3.514 7 O -0.512 6.512 8 N -0.427 5.427 9 C -0.348 4.348 10 H 0.078 0.922 11 C 0.072 3.928 12 N -0.834 5.834 13 Si 0.914 3.086 14 H -0.282 1.282 15 H -0.271 1.271 16 H -0.284 1.284 17 C 0.074 3.926 18 C -0.176 4.176 19 C -0.208 4.208 20 H 0.034 0.966 21 H 0.038 0.962 22 H 0.081 0.919 23 H 0.063 0.937 24 H 0.083 0.917 25 H 0.051 0.949 26 H 0.264 0.736 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.369 4.945 6.670 9.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.011 3.989 4 H 0.084 0.916 5 C -0.233 4.233 6 C 0.272 3.728 7 O -0.387 6.387 8 N -0.150 5.150 9 C -0.475 4.475 10 H 0.096 0.904 11 C -0.139 4.139 12 N -0.467 5.467 13 Si 0.741 3.259 14 H -0.209 1.209 15 H -0.196 1.196 16 H -0.209 1.209 17 C -0.033 4.033 18 C -0.214 4.214 19 C -0.247 4.247 20 H 0.053 0.947 21 H 0.056 0.944 22 H 0.100 0.900 23 H 0.083 0.917 24 H 0.101 0.899 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.121 0.879 28 H 0.126 0.874 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.124 4.016 6.264 9.034 hybrid contribution 0.385 0.150 -0.397 0.573 sum -4.739 4.166 5.867 8.616 Atomic orbital electron populations 1.22750 0.82384 1.02169 0.99273 1.88036 1.18188 1.26660 1.94869 1.22026 0.95925 0.84953 0.96001 0.91601 1.22431 1.01725 1.03121 0.95995 1.19549 0.85699 0.84579 0.82956 1.90540 1.70661 1.29945 1.47590 1.42674 1.18854 1.02509 1.50927 1.18814 0.86240 1.38093 1.04339 0.90435 1.25273 0.97491 0.95832 0.95289 1.69829 1.29100 1.37048 1.10721 0.86188 0.83048 0.78067 0.78626 1.20870 1.19567 1.20942 1.21746 0.94519 0.86725 1.00262 1.23126 1.04279 0.95983 0.98023 1.23342 1.03475 1.05507 0.92357 0.94721 0.94366 0.90041 0.91749 0.89888 0.93009 0.92564 0.87925 0.87399 0.89875 0.89795 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.82 101.05 1.09 1.58 16 2 O -0.36 -7.76 9.88 -55.14 -0.54 -8.31 16 3 C 0.07 1.53 2.35 -27.88 -0.07 1.46 16 4 H 0.07 1.28 7.22 -51.93 -0.37 0.90 16 5 C -0.18 -2.98 9.14 37.16 0.34 -2.64 16 6 C 0.49 13.04 6.44 -10.99 -0.07 12.97 16 7 O -0.51 -16.23 14.24 -14.37 -0.20 -16.44 16 8 N -0.43 -10.89 2.85 -107.73 -0.31 -11.20 16 9 C -0.35 -9.65 7.72 -14.93 -0.12 -9.77 16 10 H 0.08 2.06 7.53 -52.48 -0.40 1.67 16 11 C 0.07 2.06 4.39 -17.46 -0.08 1.99 16 12 N -0.83 -25.38 11.72 55.50 0.65 -24.73 16 13 Si 0.91 22.36 29.59 -169.99 -5.03 17.33 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 15 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 17 C 0.07 1.47 4.32 -67.94 -0.29 1.18 16 18 C -0.18 -3.16 9.82 -26.70 -0.26 -3.42 16 19 C -0.21 -3.50 9.48 -26.70 -0.25 -3.75 16 20 H 0.03 0.44 7.87 -51.93 -0.41 0.04 16 21 H 0.04 0.56 8.08 -51.93 -0.42 0.14 16 22 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 23 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 24 H 0.08 1.32 4.43 -51.93 -0.23 1.09 16 25 H 0.05 0.72 7.87 -51.93 -0.41 0.31 16 26 H 0.26 7.69 8.32 -40.82 -0.34 7.35 16 27 H 0.10 1.81 6.13 -51.92 -0.32 1.49 16 28 H 0.11 2.16 6.91 -51.93 -0.36 1.81 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 259.16 15.07 3.91 3.91 Total: -1.00 -34.40 259.16 -5.40 -39.80 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -4.16 Total: 0.05 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 0.30 Total: -0.40 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.34 Total: -35.93 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.75 Total: -24.75 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -34.40 -5.40 -39.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308463243.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.354 kcal (2) G-P(sol) polarization free energy of solvation -34.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds