Wall clock time and date at job start Sun Mar 29 2020 21:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99944 * 2 1 4 4 H 1.08997 * 109.47383 * 329.99843 * 3 2 1 5 5 C 1.53004 * 109.47143 * 89.99874 * 3 2 1 6 6 C 1.50701 * 109.47403 * 210.00116 * 3 2 1 7 7 O 1.21296 * 119.99498 * 359.97438 * 6 3 2 8 8 N 1.34774 * 120.00120 * 180.02562 * 6 3 2 9 9 C 1.37095 * 119.99759 * 179.97438 * 8 6 3 10 10 H 1.08004 * 119.99987 * 224.17393 * 9 8 6 11 11 C 1.38951 * 120.00598 * 44.17912 * 9 8 6 12 12 N 1.31420 * 119.99393 * 18.05593 * 11 9 8 13 13 Si 1.86797 * 120.00493 * 198.06118 * 11 9 8 14 14 H 1.48497 * 109.47037 * 269.99585 * 13 11 9 15 15 H 1.48492 * 109.46917 * 29.99760 * 13 11 9 16 16 H 1.48498 * 109.46956 * 149.99925 * 13 11 9 17 17 C 1.46495 * 120.00335 * 359.97438 * 8 6 3 18 18 C 1.52995 * 117.50269 * 189.28368 * 17 8 6 19 19 C 1.52997 * 117.50253 * 120.62049 * 17 8 6 20 20 H 1.08997 * 109.46916 * 299.99761 * 1 2 3 21 21 H 1.08999 * 109.46880 * 60.00351 * 1 2 3 22 22 H 1.08998 * 109.46562 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47207 * 60.00243 * 5 3 2 24 24 H 1.09002 * 109.46747 * 179.97438 * 5 3 2 25 25 H 1.09001 * 109.46819 * 299.99708 * 5 3 2 26 26 H 0.97006 * 119.99798 * 174.90052 * 12 11 9 27 27 H 1.09008 * 115.54881 * 334.95134 * 17 8 6 28 28 H 1.09004 * 117.49570 * 0.02562 * 18 17 8 29 29 H 1.09001 * 117.50151 * 145.01373 * 18 17 8 30 30 H 1.08999 * 117.50065 * 214.98185 * 19 17 8 31 31 H 1.09004 * 117.49511 * 359.97438 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3386 1.2640 -0.7104 7 8 3.7476 0.2190 -1.1710 8 7 4.0726 2.3876 -0.8331 9 6 5.2813 2.3497 -1.4789 10 1 6.1353 2.8586 -1.0568 11 6 5.4078 1.6567 -2.6766 12 7 4.3367 1.3440 -3.3710 13 14 7.1000 1.1693 -3.2997 14 1 7.6430 2.2535 -4.1570 15 1 8.0079 0.9493 -2.1454 16 1 6.9942 -0.0822 -4.0920 17 6 3.5789 3.6495 -0.2763 18 6 4.3438 4.9259 -0.6321 19 6 4.4430 4.3420 0.7794 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 2.8829 1.0776 1.9564 24 1 2.6614 2.7670 1.4425 25 1 1.2568 1.8015 1.9563 26 1 4.4280 0.9263 -4.2417 27 1 2.4967 3.7246 -0.1692 28 1 5.2141 4.8268 -1.2809 29 1 3.7649 5.8408 -0.7587 30 1 3.9295 4.8730 1.5808 31 1 5.3788 3.8585 1.0600 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308463243.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:05 Heat of formation + Delta-G solvation = -58.492793 kcal Electronic energy + Delta-G solvation = -15078.006608 eV Core-core repulsion = 12553.605488 eV Total energy + Delta-G solvation = -2524.401120 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.77344 -38.67117 -37.54280 -34.75651 -33.27718 -31.90596 -27.60583 -27.14841 -24.65010 -23.12397 -22.60371 -21.26635 -18.57381 -17.89511 -17.56420 -16.67755 -16.19611 -16.00662 -15.48697 -15.24592 -14.75044 -14.28858 -13.84972 -13.57368 -13.15571 -12.91874 -12.73363 -12.67640 -12.56002 -12.22510 -12.11404 -11.97521 -11.53208 -11.20143 -10.81468 -10.59289 -9.81548 -8.96011 -8.21544 -5.99994 1.33959 1.42730 1.49688 2.20893 2.34502 2.64813 3.12099 3.33268 3.42117 3.90989 4.04599 4.17597 4.25342 4.28383 4.45551 4.50226 4.57331 4.79018 4.83636 4.90613 4.93230 5.05820 5.28083 5.32224 5.47593 5.52475 6.14828 6.30279 7.01738 7.22960 7.66548 8.34744 8.87688 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.027219 B = 0.013536 C = 0.009905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.431734 B = 2068.111553 C = 2826.190948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.401 6.401 3 C 0.081 3.919 4 H 0.083 0.917 5 C -0.163 4.163 6 C 0.463 3.537 7 O -0.581 6.581 8 N -0.439 5.439 9 C -0.355 4.355 10 H 0.081 0.919 11 C 0.017 3.983 12 N -0.875 5.875 13 Si 0.972 3.028 14 H -0.260 1.260 15 H -0.267 1.267 16 H -0.295 1.295 17 C 0.041 3.959 18 C -0.174 4.174 19 C -0.177 4.177 20 H 0.068 0.932 21 H 0.040 0.960 22 H 0.096 0.904 23 H 0.046 0.954 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.259 0.741 27 H 0.131 0.869 28 H 0.079 0.921 29 H 0.119 0.881 30 H 0.130 0.870 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.230 6.875 8.421 12.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.320 6.320 3 C 0.020 3.980 4 H 0.100 0.900 5 C -0.220 4.220 6 C 0.251 3.749 7 O -0.462 6.462 8 N -0.161 5.161 9 C -0.483 4.483 10 H 0.099 0.901 11 C -0.189 4.189 12 N -0.510 5.510 13 Si 0.796 3.204 14 H -0.184 1.184 15 H -0.192 1.192 16 H -0.222 1.222 17 C -0.064 4.064 18 C -0.212 4.212 19 C -0.216 4.216 20 H 0.086 0.914 21 H 0.059 0.941 22 H 0.115 0.885 23 H 0.065 0.935 24 H 0.114 0.886 25 H 0.109 0.891 26 H 0.068 0.932 27 H 0.148 0.852 28 H 0.097 0.903 29 H 0.137 0.863 30 H 0.148 0.852 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.986 6.019 8.047 11.696 hybrid contribution 0.614 -0.401 -0.872 1.140 sum -5.371 5.618 7.174 10.578 Atomic orbital electron populations 1.23039 0.79334 1.03873 1.00957 1.87981 1.21575 1.27249 1.95209 1.21922 0.92847 0.85424 0.97834 0.89977 1.22358 1.03634 1.02925 0.93097 1.20716 0.87773 0.83947 0.82449 1.90478 1.72825 1.32326 1.50551 1.42903 1.18352 1.04560 1.50240 1.19105 0.87819 1.37310 1.04030 0.90124 1.26136 1.00791 0.95991 0.95987 1.69948 1.31153 1.38865 1.11034 0.85288 0.79146 0.77702 0.78227 1.18445 1.19186 1.22155 1.22107 0.96454 0.84984 1.02813 1.23190 1.03188 0.96336 0.98451 1.23370 1.01962 1.03493 0.92758 0.91383 0.94142 0.88540 0.93477 0.88628 0.89064 0.93203 0.85197 0.90265 0.86258 0.85207 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 10.82 113.37 1.23 1.91 16 2 O -0.40 -17.10 9.88 -129.94 -1.28 -18.38 16 3 C 0.08 3.31 2.35 29.85 0.07 3.38 16 4 H 0.08 3.02 7.22 -2.39 -0.02 3.00 16 5 C -0.16 -5.04 9.14 71.98 0.66 -4.38 16 6 C 0.46 25.24 6.44 87.66 0.56 25.80 16 7 O -0.58 -38.43 14.24 15.96 0.23 -38.20 16 8 N -0.44 -22.46 2.85 -613.14 -1.75 -24.20 16 9 C -0.36 -20.02 7.72 84.04 0.65 -19.37 16 10 H 0.08 4.35 7.53 -2.91 -0.02 4.33 16 11 C 0.02 0.99 4.39 84.93 0.37 1.36 16 12 N -0.87 -55.27 11.72 21.66 0.25 -55.02 16 13 Si 0.97 47.07 29.59 68.60 2.03 49.10 16 14 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 15 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 17 C 0.04 1.54 4.32 44.99 0.19 1.73 16 18 C -0.17 -5.77 9.82 30.62 0.30 -5.47 16 19 C -0.18 -5.33 9.48 30.62 0.29 -5.04 16 20 H 0.07 1.48 7.87 -2.39 -0.02 1.47 16 21 H 0.04 1.12 8.08 -2.39 -0.02 1.10 16 22 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 23 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.10 2.67 4.43 -2.39 -0.01 2.66 16 25 H 0.09 2.10 7.87 -2.39 -0.02 2.09 16 26 H 0.26 15.75 8.32 -92.70 -0.77 14.98 16 27 H 0.13 4.11 6.13 -2.38 -0.01 4.10 16 28 H 0.08 3.11 6.91 -2.38 -0.02 3.09 16 29 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 30 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 31 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -79.21 259.16 4.92 -74.29 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 1.11 Total: 12.48 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 4.33 Total: -0.07 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -1.49 Total: -79.22 kcal Atomic # 8 Polarization: -55.53 SS G_CDS: -1.06 Total: -56.58 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -79.21 4.92 -74.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308463243.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.795 kcal (2) G-P(sol) polarization free energy of solvation -79.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds